Determinates of Success in an ALC Classroom

Students who attend an Alternative Learning Center (ALC) do so for a variety of reasons- They may arrive due to a deficit in credit, teen parent status, at-risk of dropping out, or behavioral issues. Once at the ALC many students comment that they are more successful, than they were in their main public high school. This study is an effort to understand what factors take place in my classroom at the ALC that increases the level of success felt by the students. Through open ended interviewing ten students shared their experiences in my classroom regarding the practices that I, as their teacher, engage in helps them to feel successful. Four key themes emerged from the student interviews concerning what I do in my classroom to help students feel successful. Recommendations based on the findings include ways that I can and should modify my classroom practices to increase student success

Changes in hemlock looper [Lepidoptera: Geometridae] pupal distribution through a 3-year outbreak cycle

La distribution des chrysalides de l’arpenteuse de la pruche, Lambdina fiscellaria, a été étudiée au cours d’un cycle épidémique d’une durée de trois ans près du Lac Princeton sur l’île d’Anticosti au Québec. Au total, 10 sapins ont été coupés et toutes les chrysalides ont été comptées sur le tronc et les branches (partie non-foliée vs foliée) de la cime inférieure, médiane et supérieure, ainsi que sur le tronc sous la cime. En condition préépidémique, les chrysalides ont principalement été trouvées sur les branches des cimes médianes et supérieures. Durant l’épidémie, la densité des chrysalides n’a pas augmenté dans ces sites de pupaison et les larves se sont surtout transformées en chrysalides sur le tronc, à partir du sol jusque dans la cime médiane, ainsi que sur les branches de la cime inférieure. Peu de chrysalides ont été trouvées sur la partie foliée des branches en période post-épidémique, la plupart étant trouvées sur la partie basale non-foliée qui apparaît comme un endroit préférentiel pour la pupaison de l'arpenteuse de la pruche. De façon à optimiser la détection des augmentations de populations dans les réseaux de surveillance, des pièges à chrysalides devraient être placés à hauteur de poitrine sur le tronc de sapins baumiers.The hemlock looper, Lambdina fiscellaria, pupal distribution was studied through a 3-year outbreak cycle near Lac Princeton on Anticosti Island in Quebec. Over the 3 years, 10 balsam fir trees were cut and all pupae were counted on the stem and branches (non-foliated vs foliated parts) of the lower, middle and upper crowns and on the stem below crown. In pre-outbreak conditions, pupae were mostly found on branches of the middle and upper crowns. During the outbreak, pupal density did not increase on these parts of the trees, since pupae were mostly found on the stem, from the ground to the middle crown, and on branches of the lower crown. Few pupae were found on the foliated portion of branches in post-outbreak conditions but most were found on the basal non-foliated part of branches, which appears to be a preferred location for hemlock looper pupation. In order to optimize detection of population increases in monitoring networks, we suggest using pupal traps at breast height on balsam fir trees

Bioinformatics analysis of the early inflammatory response in a rat thermal injury model

BACKGROUND: Thermal injury is among the most severe forms of trauma and its effects are both local and systemic. Response to thermal injury includes cellular protection mechanisms, inflammation, hypermetabolism, prolonged catabolism, organ dysfunction and immuno-suppression. It has been hypothesized that gene expression patterns in the liver will change with severe burns, thus reflecting the role the liver plays in the response to burn injury. Characterizing the molecular fingerprint (i.e., expression profile) of the inflammatory response resulting from burns may help elucidate the activated mechanisms and suggest new therapeutic intervention. In this paper we propose a novel integrated framework for analyzing time-series transcriptional data, with emphasis on the burn-induced response within the context of the rat animal model. Our analysis robustly identifies critical expression motifs, indicative of the dynamic evolution of the inflammatory response and we further propose a putative reconstruction of the associated transcription factor activities. RESULTS: Implementation of our algorithm on data obtained from an animal (rat) burn injury study identified 281 genes corresponding to 4 unique profiles. Enrichment evaluation upon both gene ontologies and transcription factors, verifies the inflammation-specific character of the selections and the rationalization of the burn-induced inflammatory response. Conducting the transcription network reconstruction and analysis, we have identified transcription factors, including AHR, Octamer Binding Proteins, Kruppel-like Factors, and cell cycle regulators as being highly important to an organism's response to burn response. These transcription factors are notable due to their roles in pathways that play a part in the gross physiological response to burn such as changes in the immune response and inflammation. CONCLUSION: Our results indicate that our novel selection/classification algorithm has been successful in selecting out genes with play an important role in thermal injury. Additionally, we have demonstrated the value of an integrative approach in identifying possible points of intervention, namely the activation of certain transcription factors that govern the organism's response

Resuscitation of Ischemic Donor Livers with Normothermic Machine Perfusion: A Metabolic Flux Analysis of Treatment in Rats

Normothermic machine perfusion has previously been demonstrated to restore damaged warm ischemic livers to transplantable condition in animal models. However, the mechanisms of recovery are unclear, preventing rational optimization of perfusion systems and slowing clinical translation of machine perfusion. In this study, organ recovery time and major perfusate shortcomings were evaluated using a comprehensive metabolic analysis of organ function in perfusion prior to successful transplantation. Two groups, Fresh livers and livers subjected to 1 hr of warm ischemia (WI) received perfusion for a total preservation time of 6 hrs, followed by successful transplantation. 24 metabolic fluxes were directly measured and 38 stoichiometrically-related fluxes were estimated via a mass balance model of the major pathways of energy metabolism. This analysis revealed stable metabolism in Fresh livers throughout perfusion while identifying two distinct metabolic states in WI livers, separated at t = 2 hrs, coinciding with recovery of oxygen uptake rates to Fresh liver values. This finding strongly suggests successful organ resuscitation within 2 hrs of perfusion. Overall perfused livers regulated metabolism of perfusate substrates according to their metabolic needs, despite supraphysiological levels of some metabolites. This study establishes the first integrative metabolic basis for the dynamics of recovery during perfusion treatment of marginal livers. Our initial findings support enhanced oxygen delivery for both timely recovery and long-term sustenance. These results are expected to lead the optimization of the treatment protocols and perfusion media from a metabolic perspective, facilitating translation to clinical use

Development of Metabolic Indicators of Burn Injury: Very Low Density Lipoprotein (VLDL) and Acetoacetate Are Highly Correlated to Severity of Burn Injury in Rats

Hypermetabolism is a significant sequela to severe trauma such as burns, as well as critical illnesses such as cancer. It persists in parallel to, or beyond, the original pathology for many months as an often-fatal comorbidity. Currently, diagnosis is based solely on clinical observations of increased energy expenditure, severe muscle wasting and progressive organ dysfunction. In order to identify the minimum number of necessary variables, and to develop a rat model of burn injury-induced hypermetabolism, we utilized data mining approaches to identify the metabolic variables that strongly correlate to the severity of injury. A clustering-based algorithm was introduced into a regression model of the extent of burn injury. As a result, a neural network model which employs VLDL and acetoacetate levels was demonstrated to predict the extent of burn injury with 88% accuracy in the rat model. The physiological importance of the identified variables in the context of hypermetabolism, and necessary steps in extension of this preliminary model to a clinically utilizable index of severity of burn injury are outlined

Experimental Demonstration of Squeezed State Quantum Averaging

We propose and experimentally demonstrate a universal quantum averaging process implementing the harmonic mean of quadrature variances. The harmonic mean protocol can be used to efficiently stabilize a set of fragile squeezed light sources with statistically fluctuating noise levels. The averaged variances are prepared probabilistically by means of linear optical interference and measurement induced conditioning. We verify that the implemented harmonic mean outperforms the standard arithmetic mean strategy. The effect of quantum averaging is experimentally tested both for uncorrelated and partially correlated noise sources with sub-Poissonian shot noise or super-Poissonian shot noise characteristics.Comment: 4 pages, 5 figure

Perfect quantum error correction coding in 24 laser pulses

An efficient coding circuit is given for the perfect quantum error correction of a single qubit against arbitrary 1-qubit errors within a 5 qubit code. The circuit presented employs a double `classical' code, i.e., one for bit flips and one for phase shifts. An implementation of this coding circuit on an ion-trap quantum computer is described that requires 26 laser pulses. A further circuit is presented requiring only 24 laser pulses, making it an efficient protection scheme against arbitrary 1-qubit errors. In addition, the performance of two error correction schemes, one based on the quantum Zeno effect and the other using standard methods, is compared. The quantum Zeno error correction scheme is found to fail completely for a model of noise based on phase-diffusion.Comment: Replacement paper: Lost two laser pulses gained one author; added appendix with circuits easily implementable on an ion-trap compute

“These Trees Have Stories to Tell”: Linking Dënesǫ́łıné Oral History of Caribou Use with Trample Scar Frequency on Black Spruce Roots at Ɂedacho Kué

For thousands of years Ɂedacho Kué (Artillery Lake, Northwest Territories) has been a key water crossing site for barren-ground caribou (Rangifer tarandus groenlandicus). Human disturbance of barren-ground caribou habitat in northern Canada has emerged as an important focus of study in the last decade; particularly in the Bathurst range of the Northwest Territories where caribou populations have declined by more than 95% since the 1980s. Guided by local Indigenous leaders and Elders, a collaborative research project was developed with the Dënesǫ́łıné people of Łutsël K’e Dëne First Nation (2012 – 14). This paper describes linkages between knowledge derived from Dënesǫ́łıné oral history and quantitative dendroecological analysis of trample scars on black spruce (Picea mariana) root samples collected at Ɂedacho Kué to provide a better understanding of caribou use at this location. Findings from oral histories and dendroecology analysis were consistent with one another and with previous dendroecology study in the region, although some discrepancies were detected in data from 1995 – 2006 that require further study to elucidate. Key findings include relatively low caribou use at Ɂedacho Kué during the 1930s and late 1960s, with use increasing into the 1970s and peaking in the late 1980s, as well as Elder and hunter reports of no caribou in some years between 2005 and 2012. This work addresses a gap in scientific data about barren-ground caribou movements at Ɂedacho Kué prior to satellite collar use in 1996 and corroborates previously documented oral histories about the enduring value of Ɂedacho Kué as critical habitat to barren-ground caribou. Given the drastic decline of the Bathurst caribou over the last two decades, more research is needed to understand movements and their relationship to population dynamics. In this context, the research approach described in this paper could be used as an example of how to meaningfully bring together place-based Indigenous knowledge and science in addressing an urgent issue of Arctic sustainability.    Depuis des milliers d’années, Ɂedacho Kué (lac Artillery, Territoires du Nord-Ouest) sert d’important point de franchissement de cours d’eau pour le caribou de la toundra (Rangifer tarandus groenlandicus). La perturbation anthropique de l’habitat du caribou de la toundra dans le Nord canadien a fait l’objet d’études importantes ces dix dernières années, plus particulièrement dans l’aire de répartition de Bathurst, dans les Territoires du Nord-Ouest, où les populations de caribous ont chuté de plus de 95 % depuis les années 1980. Un projet de recherche collaborative guidé par des chefs et des aînés autochtones locaux a été conçu en consultation avec le peuple Dënesǫ́łıné de la Première Nation Łutsël K’e Dëne (2012 – 2014). Cet article décrit les liens entre les connaissances dérivées de l’histoire orale des Dënesǫ́łınés et l’analyse dendroécologique quantitative des cicatrices de piétinement se trouvant sur les échantillons de racines d’épinettes noires (Picea mariana) prélevés à Ɂedacho Kué afin de mieux comprendre l’utilisation de ce lieu par les caribous. Les constatations découlant de l’histoire orale et de l’analyse dendroécologique concordaient ensemble ainsi qu’avec une étude dendroécologique antérieure de la région, bien que certains écarts aient été décelés dans les données de 1995 à 2006, écarts qui se doivent d’être étudiés afin d’être élucidés. Parmi les principales constatations, notons l’utilisation relativement faible de Ɂedacho Kué par les caribous pendant les années 1930 et la fin des années 1960, une utilisation accrue dans les années 1970 ayant atteint un sommet vers la fin des années 1980, ainsi que le signalement de l’absence de caribous par les aînés et les chasseurs au cours de certaines années entre 2005 et 2012. Notre recherche comble un manque de données scientifiques relativement aux déplacements du caribou de la toundra à Ɂedacho Kué avant que les colliers émetteurs à transmission par satellite ne commencent à être employés en 1996. Elle corrobore l’histoire orale documentée précédemment au sujet de la valeur durable de ?edacho Kué en tant qu’habitat critique du caribou de la toundra. En raison de la chute importante de la population du caribou de Bathurst ces deux dernières décennies, de plus amples recherches s’imposent afin de comprendre les déplacements et leur lien avec la dynamique de la population. Dans ce contexte, la démarche de recherche décrite dans cet article pourrait servir d’exemple montrant comment concilier les connaissances autochtones d’un endroit avec la science pour faire face à un enjeu urgent de durabilité de l’Arctique.

Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana.

Iron (Fe) is an important growth factor for diatoms and its availability is further restricted by changes in the carbonate chemistry of seawater. We investigated the physiological attributes and transcriptional profiles of the diatom Thalassiosira pseudonana grown on a day: night cycle under different CO2/pH and iron concentrations, that in combination generated available iron (Fe\u27) concentrations of 1160, 233, 58 and 12 pM. We found the light-dark conditions to be the main driver of transcriptional patterns, followed by Fe\u27 concentration and CO2 availability, respectively. At the highest Fe\u27 (1160 pM), 55% of the transcribed genes were differentially expressed between day and night, whereas at the lowest Fe\u27 (12 pM), only 28% of the transcribed genes displayed comparable patterns. While Fe limitation disrupts the diel expression patterns for genes in most central metabolism pathways, the diel expression of light- signaling molecules and glycolytic genes was relatively robust in response to reduced Fe\u27. Moreover, we identified a non-canonical splicing of transcripts encoding triose-phosphate isomerase, a key-enzyme of glycolysis, generating transcript isoforms that would encode proteins with and without an active site. Transcripts that encoded an active enzyme maintained a diel expression at low Fe\u27, while transcripts that encoded the non-active enzyme lost the diel expression. This work illustrates the interplay between nutrient limitation and transcriptional regulation over the diel cycle. Considering that future ocean conditions will reduce the availability of Fe in many parts of the oceans, our work identifies some of the regulatory mechanisms that may shape future ecological communities