27,418 research outputs found

    Immunoisolation of centrosomes from Drosophila melanogaster

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    Remote spectral imaging with simultaneous extraction of 3D topography for historical wall paintings

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    PRISMS (Portable Remote Imaging System for Multispectral Scanning) is designed for in situ, simultaneous high resolution spectral and 3D topographic imaging of wall paintings and other large surfaces. In particular, it can image at transverse resolutions of tens of microns remotely from distances of tens of metres, making high resolution imaging possible from a fixed position on the ground for areas at heights that is difficult to access. The spectral imaging system is fully automated giving 3D topographic mapping at millimetre accuracy as a by-product of the image focusing process. PRISMS is the first imaging device capable of both 3D mapping and spectral imaging simultaneously without additional distance measuring devices. Examples from applications of PRISMS to wall paintings at a UNESCO site in the Gobi desert are presented to demonstrate the potential of the instrument for large scale 3D spectral imaging, revealing faded writing and material identification

    Protein search for multiple targets on DNA

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    Protein-DNA interactions are crucial for all biological processes. One of the most important fundamental aspects of these interactions is the process of protein searching and recognizing specific binding sites on DNA. A large number of experimental and theoretical investigations have been devoted to uncovering the molecular description of these phenomena, but many aspects of the mechanisms of protein search for the targets on DNA remain not well understood. One of the most intriguing problems is the role of multiple targets in protein search dynamics. Using a recently developed theoretical framework we analyze this question in detail. Our method is based on a discrete-state stochastic approach that takes into account most relevant physical-chemical processes and leads to fully analytical description of all dynamic properties. Specifically, systems with two and three targets have been explicitly investigated. It is found that multiple targets in most cases accelerate the search in comparison with a single target situation. However, the acceleration is not always proportional to the number of targets. Surprisingly, there are even situations when it takes longer to find one of the multiple targets in comparison with the single target. It depends on the spatial position of the targets, distances between them, average scanning lengths of protein molecules on DNA, and the total DNA lengths. Physical-chemical explanations of observed results are presented. Our predictions are compared with experimental observations as well as with results from a continuum theory for the protein search. Extensive Monte Carlo computer simulations fully support our theoretical calculations

    Microplankton species assemblages at the Scripps Pier from March to November 1983 during the 1982-1984 El Nino event

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    A semiweekly sampling program at the Scripps Institution of Oceanography pier was begun in 1983 during an El Nino event. Microplankton data for March to November 1983 show a temporal sequence of species assemblages of the 24 important taxa, with a residence time of 1 to 4 weeks. From March to early September, the assemblages consisted of typical neritic taxa. From mid-September to mid-November, the presence of oceanic warm-wave species was associated with positive temperature anomalies characteristic of the El Nino condition. During the period studied numerical abundances were low

    The conduction pathway of potassium channels is water free under physiological conditions.

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    Ion conduction through potassium channels is a fundamental process of life. On the basis of crystallographic data, it was originally proposed that potassium ions and water molecules are transported through the selectivity filter in an alternating arrangement, suggesting a "water-mediated" knock-on mechanism. Later on, this view was challenged by results from molecular dynamics simulations that revealed a "direct" knock-on mechanism where ions are in direct contact. Using solid-state nuclear magnetic resonance techniques tailored to characterize the interaction between water molecules and the ion channel, we show here that the selectivity filter of a potassium channel is free of water under physiological conditions. Our results are fully consistent with the direct knock-on mechanism of ion conduction but contradict the previously proposed water-mediated knock-on mechanism

    Deterministic cavity quantum electrodynamics with trapped ions

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    We have employed radio-frequency trapping to localize a single 40Ca+-ion in a high-finesse optical cavity. By means of laser Doppler cooling, the position spread of the ion's wavefunction along the cavity axis was reduced to 42 nm, a fraction of the resonance wavelength of ionized calcium (λ = 397 nm). By controlling the position of the ion in the optical field, continuous and completely deterministic coupling of ion and field was realized. The precise three-dimensional location of the ion in the cavity was measured by observing the fluorescent light emitted upon excitation in the cavity field. The single-ion system is ideally suited to implement cavity quantum electrodynamics under cw conditions. To this end we operate the cavity on the D3/2–P1/2 transition of 40Ca+ (λ = 866 nm). Applications include the controlled generation of single-photon pulses with high efficiency and two-ion quantum gates
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