Evidences of exopolysaccharide production by Helicobacter pylori submitted to hydrodynamic stress

Helicobacter pylori is a widespread Gram-negative bacterium that infects the stomach of humans leading to the onset of several gastric disorders, such as gastritis, gastric ulcers, and cancers. The transmission of H. pylori remains unclear but two different pathways have been suggested: faecal-oral and oraloral. It has been reported that H. pylori has the ability to incorporate in biofilms formed on water-exposed surfaces thus providing a route of infection. On the other hand, a polysaccharide-containing biofilm has been observed at the air-liquid interface when H. pylori is grown in a glass fermenter1. Because exopolysaccharides (EPS) play a determinant role in bacterial adhesion by conferring protection against adverse conditions such as starvation and environmental aggressions, EPS production would be expected to be higher if the bacterium is exposed to water. In this work the capability of H. pylori to produce EPS when exposed to water and under hydrodynamic stress has been evaluated. H. pylori was inoculated in autoclaved distilled water and allowed to stand under gentle stirring at room temperature. The significant and continuous increase in the sugar content 192 hours after inoculation suggests the production of exopolysaccharides. This evidence is reinforced by epiflourescence microscopical observation of the bacteria stained with DAPI (4,6-diamidino-2-phenylindole) that revealed the presence of bacterial aggregates 318 hours after inoculation

Big data-driven prediction of airspace congestion

Air Navigation Service Providers (ANSP) worldwide have been making a considerable effort for the development of a better method to measure and predict aircraft counts within a particular airspace, also referred to as airspace density. An accurate measurement and prediction of airspace density is crucial for a better managed airspace, both strategically and tactically, yielding a higher level of automation and thereby reducing the air traffic controller's workload. Although the prior approaches have been able to address the problem to some extent, data management and query processing of ever-increasing vast volume of air traffic data at high rates, for various analytics purposes such as predicting aircraft counts, still remains a challenge especially when only linear prediction models are used. In this paper, we present a novel data management and prediction system that accurately predicts aircraft counts for a particular airspace sector within the National Airspace System (NAS). The incoming Traffic Flow Management (TFM) data is streaming, big, uncorrelated and noisy. In the preprocessing step, the system continuously processes the incoming raw data, reduces it to a compact size, and stores it in a NoSQL database, where it makes the data available for efficient query processing. In the prediction step, the system learns from historical trajectories and uses their segments to collect key features such as sector boundary crossings, weather parameters, and other air traffic data. The features are fed into various regression models, including linear, non-linear and ensemble models, and the best performing model is used for prediction. Evaluation on an extensive set of real track, weather, and air traffic data including boundary crossings in the U.S. verify that our system efficiently and accurately predicts aircraft counts in each airspace sector.Comment: Submitted to the 2023 IEEE/AIAA Digital Aviation Systems Conference (DASC

Identification of cell-surface mannans in a virulent Helicobacter pylori strain

With the intent of contributing to a carbohydrate-based vaccine against the gastroduodenal pathogen, Helicobacter pylori, we report here the structure of cell-surface mannans obtained from a virulent strain. Unlike other wild-type strains, this strain was found to express in good quantities this polysaccharide in vitro. Structural analysis revealed a branched mannan formed by a backbone of α-(1→6)-linked mannopyranosyl residues with approximately 80% branching at the O-2 position. The branches were composed of O-2-linked Man residues in both α- and β-configurations: (image) In addition, this strain also expressed cell-surface emblematic H. pylori lipopolysaccharides (LPS) containing partially fucosylated polyLacNAc O-chains. Affinity assays with polymyxin-B and concanavalin A revealed no association between the mannan and the LPS. The described mannans may be implicated in the mediation of host–microbial interactions and immunological modulation.This work was supported by Fundacao para a Ciencia e Tecnologia (FCT) through project Pylori E&LPS POCI/QUI/56393/2004, PhD grant SFRH/BD/19929/2004, by the Natural Sciences and Engineering Research Council of Canada (NSERC), and by the European Network of Research Infrastructures within the 6th Framework Programme of the EC (Contract # RII3-026145, EU-NMR). The authors further thank Dr. Adrien Favier (RALF-NMR facility, Grenoble - France) for conducting NMR experiments

Melatonin-Induced Temporal Up-Regulation of Gene Expression Related to Ubiquitin/Proteasome System (UPS) in the Human Malaria Parasite Plasmodium falciparum

There is an increasing understanding that melatonin and the ubiquitin/ proteasome system (UPS) interact to regulate multiple cellular functions. Post-translational modifications such as ubiquitination are important modulators of signaling processes, cell cycle and many other cellular functions. Previously, we reported a melatonin-induced upregulation of gene expression related to ubiquitin/proteasome system (UPS) in Plasmodium falciparum, the human malaria parasite, and that P. falciparum protein kinase 7 influences this process. This implies a role of melatonin, an indolamine, in modulating intraerythrocytic development of the parasite. In this report we demonstrate by qPCR analysis, that melatonin induces gene upregulation in nine out of fourteen genes of the UPS, consisting of the same set of genes previously reported, between 4 to 5 h after melatonin treatment. We demonstrate that melatonin causes a temporally controlled gene expression of UPS members

Characterization of materials used in the manufacture of ceramic tile with incorporation of ornamental rock waste

The production of ceramic tiles, such as tiles, has a great environmental impact, either in the extraction of natural raw materials or gas emissions in the burning stages. The use of industrial solid waste in ceramic materials can contribute to the reduction of these impacts, according to the characteristics of solid waste and its interaction with ceramic materials in the processing steps. Thus, this study aimed to characterize the materials needed to make a ceramic tile with incorporation of ornamental rock waste (ORW), thus evaluating its main characteristics regarding the feasibility of this incorporation. The physical characterization of the clays used in the production of ceramic artifacts was performed, and for the waste the mineralogical analyzes were performed, through x-ray diffraction (XRD), microstructure analysis from confocal optical microscopy, after sintering the prototypes and chemical analysis by X-ray spectroscopy (EDX). Soon after the raw materials went through the step of conformation and preparation of the prismatic specimens by the process of extrusion of the ceramic mass, with an incorporation of the ORW in 0% and 15% of the ceramic mass, for its subsequent The prototypes were sintered at three different temperatures (850 °C, 950 °C and 1,050 °C). The specimens were submitted to technological tests of mechanical resistance, water absorption, firing shrinkage and porosity to evaluate the incorporation viability. The results indicated the presence of quartz particles in all raw materials, and also that the clays of the study region are predominantly kaolinitic. The presence of these materials in the ceramic masses directly influences the micrographs, because they result in the formation of liquid phase, inert particles that can turn the site into a stress concentration point and when incorporated in the ORW the specimens met the technical specifications of the Brazilian standard for application on ceramic tiles. The results found in the technological tests carried out, that the incorporation of 15% of ornamental rock waste in both clays did not affect the tile properties, indicating the feasibility of incorporating this waste in civil construction, minimizing the impacts generated

Neurologic Serious Adverse Events Associated with Nivolumab Plus Ipilimumab or Nivolumab Alone in Advanced Melanoma, Including a Case Series of Encephalitis

BackgroundDespite unprecedented efficacy across multiple tumor types, immune checkpoint inhibitor therapy is associated with a unique and wide spectrum of immune‐related adverse events (irAEs), including neurologic events ranging from mild headache to potentially life‐threatening encephalitis. Here, we summarize neurologic irAEs associated with nivolumab and ipilimumab melanoma treatment, present cases of treatment‐related encephalitis, and provide practical guidance on diagnosis and management.MethodsWe searched a Global Pharmacovigilance and Epidemiology database for neurologic irAEs reported over an 8‐year period in patients with advanced melanoma receiving nivolumab with or without ipilimumab from 12 studies sponsored by Bristol‐Myers Squibb. Serious neurologic irAEs were reviewed, and relationship to nivolumab or ipilimumab was assigned.ResultsIn our search of 3,763 patients, 35 patients (0.93%) presented with 43 serious neurologic irAEs, including neuropathy (n = 22), noninfective meningitis (n = 5), encephalitis (n = 6), neuromuscular disorders (n = 3), and nonspecific adverse events (n = 7). Study drug was discontinued (n = 20), interrupted (n = 8), or unchanged (n = 7). Most neurologic irAEs resolved (26/35 patients; 75%). Overall, median time to onset was 45 days (range 1–170) and to resolution was 32 days (2–809+). Median time to onset of encephalitis was 55.5 days (range 18–297); four cases resolved and one was fatal.ConclusionBoth oncologists and neurologists need to be aware of signs and symptoms of serious but uncommon neurologic irAEs associated with checkpoint inhibitors. Prompt diagnosis and management using an established algorithm are critical to minimize serious complications from these neurologic irAEs.Implications for PracticeWith increasing use of checkpoint inhibitors in cancer, practicing oncologists need to be aware of the potential risk of neurologic immune‐related adverse events and be able to provide prompt treatment of this uncommon, but potentially serious, class of adverse events. We summarize neurologic adverse events related to nivolumab alone or in combination with ipilimumab in patients with advanced melanoma from 12 studies and examine in depth 6 cases of encephalitis. We also provide input and guidance on the existing neurologic adverse events management algorithm for nivolumab and ipilimumab.Melanoma is a particularly immunogenic cancer, and immune checkpoint inhibitors have been extensively studied in this tumor type. This review focuses on the incidence of serious neurologic immune‐related adverse events, specifically encephalitis, in patients with advanced melanoma treated with nivolumab alone or in sequence or combination with ipilimumab. Practical guidance is provided for the diagnosis and management of treatment‐related encephalitis associated with nivolumab and ipilimumab.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/139998/1/onco12130.pd

Sustainable strategies based on glycine–betaine analogue ionic liquids for the recovery of monoclonal antibodies from cell culture supernatants

Monoclonal antibodies (mAbs) are of crucial interest for therapeutic purposes, particularly in vaccination and immunization, and in the treatment of life-threatening diseases. However, their downstream processing from the complex cell culture media in which they are produced still requires multiple steps, making mAbs extremely high-cost products. Therefore, the development of cost-effective, sustainable and biocompatible purification strategies for mAbs is in high demand to decrease the associated economic, environmental and health burdens. Herein, novel aqueous biphasic systems (ABS) composed of glycine–betaine analogue ionic liquids (AGB-ILs) and K2HPO4/KH2PO4 at pH 7.0, the respective three-phase partitioning (TPP) systems, and hybrid processes combined with ultrafiltration were investigated and compared in terms of performance as alternative strategies for the purification and recovery of anti-human interleukin-8 (anti-IL-8) mAbs, which are specific therapeutics in the treatment of inflammatory diseases, from Chinese Hamster Ovary (CHO) cell culture supernatants. With the studied ABS, mAbs preferentially partition to the IL-rich phase, with recovery yields up to 100% and purification factors up to 1.6. The best systems were optimized in what concerns the IL concentration, allowing to take advantage of IL-based three-phase partitioning approaches where a precipitate enriched in mAbs is obtained at the ABS interface, yielding 41.0% of IgG with a purification factor of 2.7 (purity of 60.9%). Hybrid processes combining the two previous techniques and an ultrafiltration step were finally applied, allowing the recovery of mAbs from the different fractions in an appropriate buffer solution for further biopharmaceutical formulations, while allowing the simultaneous IL removal and reuse. The best results were obtained with the hybrid process combining TPP and ultrafiltration, allowing to obtain mAbs with a purity higher than 60%. The recyclability of the IL was additionally demonstrated, revealing no losses in the purification and recovery performance of these systems for mAbs. The biological activity of anti-IL-8 mAbs is maintained after the several purification and recovery steps, indicating that the novel ABS, three-phase partitioning and hybrid processes comprising AGB-ILs are promising and sustainable strategies in mAbs downstream processing.publishe

Contribution of southern Brazil to the climate and biodiversity conservation agenda

We highlight the importance of the South Brazilian grasslands and the Araucaria Forest formations located in the Pampa and Atlantic Forest Biomes and their associated coastal and estuarine environments for the conservation of biodiversity, carbon storage and maintenance of significant ecosystem services. We reinforce the need to strengthen research institutions on the environment and the broad participation of different segments of society in the southern region of Brazil to change the course of environmental policies, highlighting the potential of the states of Rio Grande do Sul, Santa Catarina and Paraná on national and international agendas on biodiversity and climate

Identities among actin-encoding cDNAs of the Nile tilapia (Oreochromis niloticus) and other eukaryote species revealed by nucleotide and amino acid sequence analyses

Abstract Actin-encoding cDNAs of Nile tilapia (Oreochromis niloticus) were isolated by RT-PCR using total RNA samples of different tissues and further characterized by nucleotide sequencing and in silico amino acid (aa) sequence analysis. Comparisons among the actin gene sequences of O. niloticus and those of other species evidenced that the isolated genes present a high similarity to other fish and other vertebrate actin genes. The highest nucleotide resemblance was observed between O. niloticus and O. mossambicus α-actin and β-actin genes. Analysis of the predicted aa sequences revealed two distinct types of cytoplasmic actins, one cardiac muscle actin type and one skeletal muscle actin type that were expressed in different tissues of Nile tilapia. The evolutionary relationships between the Nile tilapia actin genes and diverse other organisms is discussed