JellyWeb: an interactive information system on Scyphozoa, Cubozoa and Staurozoa

Identification of organisms is traditionally based on the use of “classic” identification keys, normally printed on paper. These keys have several drawbacks: they are mainly based on the systematics, requiring identification of orders, families and genera at first; they are written by experts for other experts, in a specific scientific jargon; they have a “frozen” structure (sequence of theses/antitheses); once published, they cannot be changed or updated without printing a new edition. Due to the use of computers, it is now possible to build new digital identification tools, which: 1) can be produced automatically, if the characters are stored in a database; 2) can be freed from the traditional systematics, giving priority to easy-to-observe characters, incl. those usually uncommon to the classical keys, such as ecology and distribution; 3) can be updated in real time once published on-line; 4) can be available on different media, and on mobile devices. An important feature of these new digital tools is their “collaborative” nature. They can be enriched by the contribution of several researchers, which can cooperate while maintaining rights and property of the resources and data they contribute to the system. JellyWeb, the information system on Scyphozoa, Cubozoa and Staurozoa has been developed in Trieste since 2010. The system was created with the aim of – potentially – becoming a starting point for a wide collaborative effort in developing a user-friendly worldwide digital identification system for jellyfishes

INFORMATION SYSTEM ON SCYPHOZOA, CUBOZOA AND STAUROZOA

This information system permits to discover the rich biodiversity of Scyphozoa, Cubozoa and Staurozoa The system is equipped with a multi-entry query interface, which permits to combine the name of a taxon together with some simple morphological features. The result is a list of records, with or without images. By clicking on records, the system will display a taxon page, listing images and a description, when available

Asexual reproduction and strobilation of Sanderia malayensis (Scyphozoa, Pelagiidae) in relation to temperature: experimental evidence and implications

Sanderia malayensis is a scyphozoan species present in the Indian and Pacific Oceans, ranging from the Suez Canal to Japan. Although this jellyfish is commonly kept in aquariums around the world, there is a knowledge gap regarding its biology and ecology, especially at the polyp stage. In this study, we tested the asexual reproductive activity of S.malayensis at Three different temperatures: 10, 15 and 20 \ub0C. Results showed significant increases of polyps at 15 \ub0C and 20 \ub0C, and a minimum at 10\ub0C, corresponding with daily budding rates of 6.61\ub1 0.92%, 5.85 \ub1 2.36% and 0.66\ub10.24%, respectively. Moreover, a second experiment was carried out to report about the ability of S. malayensis to prey on Aurelia solida at ephyra stage. Unidirectional predation of S. malayensis ephyrae on A. solida and an absence of inverse predation was observed. These results could give new insights on the potential fitness and survival of this species if it will ever invade the Mediterranean Sea

Determining Obelia spp. diversity and population dynamics in Thau lagoon (Northwestern Mediterranean Sea, France).

The jellyfish Obelia belongs to the family Campanulariidae (Hydrozoa, Leptomedusae), an important and widely distributed family of hydrozoans. Obelia is a very popular and widespread medusa, however first report on its complete life cycle was only published in the late nineties in Northern Japan. This is probably due to its size, as the medusa umbrella diameter is lower than 1mm. This Hydrozoa presents a bentho-pelagic life cycle with both polyp and medusa stages. In Thau lagoon, Northwestern Mediterranean Sea, populations of Obelia occur each year. Some polyps colonies were identified and sampled in the lagoon on Zostera noltii leaves, indicating that the populations realise their full development cycle within the lagoon. Morphological and genetical (COI) approaches, on both polyps and medusae, have revealed that main populations are composed by O. dichotoma individuals (side branches typically irregular in length; hydroteca bell-shaped, usually not very deep, thin walled, often thrown into fine longitudinal folds; hydrotecal rim with smooth or with shallow cusps \u2013crenate, slightly flared; diaphragm transverse to oblique) but that O. bidentata (lateral branches roughly in right angles pairs are given on both sides; slightly oblique diaphragm; hydrotecal rim with bimucronate cusps) is also present in lower abundances. An in situ pelagic monitoring every two weeks since 2008 have allowed understanding the populations dynamics of the genus and the environmental factors that seemed to be particularly appropriated for promoting optimum growth conditions. Baseline information regarding seasonal cycles and historical abundances were provided from a 8 years monitoring, which has allowed detecting blooms. Indeed, the medusae were found at very low densities during the study period with main abundances under 5 ind.m-3, in accordance to previous reports for Obelia spp. medusae around the world. Nevertheless, 2 exceptional events took place in June 2008 and May 2013 were blooms reached 1232 and 660 ind.m-3 respectively. Such data raise questions regarding the potential importance of this small and understudied hydrozoa in the pelagic community of Thau lagoon. Consequently, it is necessary to improve the available databases documenting medusae blooms, as this will provide baseline information about these little-studied events

Aspetti della biologia ed analisi del ciclo riproduttivo di Gobio benacensis (Pollini, 1816) nel Nordest Italia

Il presente studio si propone di approfondire la biologia ed il ciclo riproduttivo del gobione italiano (Gobio benacensis), specie endemica a corologia cisalpina inclusa nella categoria \u201cEndangered\u201d (EN) della lista rossa IUCN, con l\u2019intento di fornire informazioni utili a redigere corretti piani gestionali volti alla conservazione della specie. Le indagini sono state condotte in un corso d\u2019acqua del Bacino del Fiume Isonzo (Torrente Reca, Nordest Italia) ed hanno riguardato 86 esemplari catturati nell\u2019aprile 2016 al fine di definirne la consistenza e la struttura della popolazione e 77 esemplari, catturati mensilmente e bimestralmente tra aprile 2016 e febbraio 2017, per la definizione del ciclo riproduttivo. Le curve di regressione del peso sulla lunghezza totale per i maschi (W=0,1253TL2,8770) e per le femmine (W=0,1555TL2,7554), confrontate mediante ANCOVA, non hanno denunciato differenze significative. I valori medi \ub1 deviazione standard dell\u2019indice gonadosomatico GSI per i maschi sono compresi tra 0,61\ub10,49 e 1,75\ub10,58, mentre per le femmine tra 1,02\ub10,88 e 14,15\ub12,80. L\u2019indice epatosomatico HSI ha denunciato range compresi tra 0,05\ub10,02 e 2,68\ub11,26 e tra 0,25\ub10,19 e 1,75\ub10,58 rispettivamente per i maschi e per le femmine. Le analisi istologiche di ovari e testicoli, analizzati per la prima volta nella specie, hanno permesso di identificare gli stadi di maturazione, che unitamente all\u2019analisi del GSI indicano che la specie depone le uova a pi\uf9 riprese durante il periodo riproduttivo compreso tra aprile e giugno. Nei maschi \ue8 stata, tuttavia, evidenziata una prolungata attivit\ue0 riproduttiva che si protrae fino al mese di agosto

The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa

Cotylorhiza tuberculata is an important scyphozoan jellyfish producing population blooms in the Mediterranean probably due to pelagic ecosystem's decay. Its gastric cavity can serve as a simple model of microbial–animal digestive associations, yet poorly characterized. Using state-of-the-art metagenomic population binning and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH), we show that only four novel clonal phylotypes were consistently associated with multiple jellyfish adults. Two affiliated close to Spiroplasma and Mycoplasma genera, one to chlamydial ‘Candidatus Syngnamydia’, and one to bacteroidetal Tenacibaculum, and were at least one order of magnitude more abundant than any other bacteria detected. Metabolic modelling predicted an aerobic heterotrophic lifestyle for the chlamydia, which were found intracellularly in Onychodromopsis-like ciliates. The Spiroplasma-like organism was predicted to be an anaerobic fermenter associated to some jellyfish cells, whereas the Tenacibaculum-like as free-living aerobic heterotroph, densely colonizing the mesogleal axis inside the gastric filaments. The association between the jellyfish and its reduced microbiome was close and temporally stable, and possibly related to food digestion and protection from pathogens. Based on the genomic and microscopic data, we propose three candidate taxa: ‘Candidatus Syngnamydia medusae’, ‘Candidatus Medusoplasma mediterranei’ and ‘Candidatus Tenacibaculum medusae’.This research from RRM’s group was partially supported by the Spanish Ministry of Economy projects CGL2012-39627-C03-03 and CLG2015_66686-C3-1-P, which were also supported with European Regional Development Fund (FEDER) funds. KTK’s research was supported, in part, by the U.S. National Science Foundation (Award No. 1241046). RRM acknowledges the economic support of grant PR2015-00008 included in the program Salvador de Madariaga of the Ministry of Education, Culture and Sports in order to undertake a research stay at the MPI-MM in Bremen. TVP acknowledges the predoctoral fellowship of the Ministerio de Economía y Competitividad of the Spanish Government for the FPI fellowship (Nr BES-2013-064420) supporting his research activities

Clinical validation of full HR-HPV genotyping HPV Selfy assay according to the international guidelines for HPV test requirements for cervical cancer screening on clinician-collected and self-collected samples

Background According to international guidelines, Human Papillomavirus (HPV) DNA tests represent a valid alternative to Pap Test for primary cervical cancer screening, provided that they guarantee balanced clinical sensitivity and specificity for cervical intraepithelial neoplasia grade 2 or more (CIN2+) lesions. The study aimed to assess whether HPV Selfy (Ulisse BioMed - Trieste, Italy), a full-genotyping HPV DNA test that detects and differentiates 14 high-risk HPV (HR-HPV) types, meets the criteria for primary cervical cancer screening described in the international guidelines, on clinician-collected as well as on self-collected samples. Methods For each participant woman, consecutively referring to Azienda Sanitaria Universitaria Giuliano Isontina (Trieste, Italy) and CRO-National Cancer Institute (Aviano, Italy) for the cervical cancer screening program, the following samples were tested: (a) a clinician-collected cervical specimen, analyzed with the reference test (Hybrid Capture (R) 2 test, HC2) and HPV Selfy; and (b) a self-collected vaginal sample, analyzed with HPV Selfy. Enrolled women were also asked to fulfill a questionnaire about self-sampling acceptability. As required by guidelines, a non-inferiority test was conducted to compare the clinical performance of the test under evaluation with its reference test. Results HPV Selfy clinical sensitivity and specificity resulted non-inferior to those of HC2. By analysis of a total of 889 cervical liquid-based cytology samples from a screening population, of which 98 were from women with CIN2+, HPV Selfy showed relative sensitivity and specificity for CIN2+ of 0.98 and 1.00 respectively (non-inferiority score test: P = 0.01747 and P = 0.00414, respectively); the test reached adequate intra- and inter-laboratory reproducibility. Moreover, we demonstrated that the performance of HPV Selfy on self-collected vaginal samples was non-inferior to the performance obtained on clinician-collected cervical specimen (0.92 relative sensitivity and 0.97 relative specificity). Finally, through HPV Selfy genotyping, we were able to describe HPV types prevalence in the study population. Conclusions HPV Selfy fulfills all the requirements of the international Meijer's guidelines and has been clinically validated for primary cervical cancer screening purposes. Moreover, HPV Selfy has also been validated for self-sampling according to VALHUDES guidelines. Therefore, at date, HPV Selfy is the only full-genotyping test validated both for screening purposes and for self-sampling. Trial registration ASUGI Trieste n. 16008/2018; CRO Aviano n.17149/201

Le meduse dei nostri mari

La meduse dei nostri mari Le guide hanno tre sezioni: 1.Istruzioni di base per l'uso della guida 2.Interfaccia di visualizzazione della chiave, con corredo di immagini 3.Chiave testuale illustrata (attenzione: se la chiave ha un numero di passaggi troppo elevato, questa funzione potrebbe richiedere un tempo eccessivo, in base all'hardware di cui si dispone) Come usare la chiave\u2022Ogni pagina della chiave richiede la scelta di una tra diverse opzioni (ad esempio "fiori gialli / fiori non gialli") \u2022Per scegliere una delle opzioni, cliccare sulla sua descrizione \u2022Le immagini associate alle diverse opzioni di un carattere non si rifersicono necessariamente alle specie presenti nella chiave \u2022E' possibile tornare al carattere precendente oppure alla home page della chiave, usando i link presenti alla sommit\ue0 di ogni pagina \u2022Alla fine del processo di identificazione, viene visualizzata una pegina che descrive la speci

Why Do Only Males of Mawia benovici (Pelagiidae: Semaeostomeae: Scyphozoa) Seem to Inhabit the Northern Adriatic Sea?

This manuscript presents four new observations of the jellyfish Mawia benovici in the Adriatic Sea. This new species was recently identified as Pelagia benovici by Piraino et al. (2014) and then placed in the new genus Mawia by Avian et al. 2016. This species is rare and is almost exclusively observed in the Adriatic Sea. Interestingly, the majority of observations refer to males only. Few studies have addressed the issue of sex determination in Syphozoa in particular, as sex identity can only be determined at the medusa stage. Unfortunately, the rarity of M. benovici and the lack of female specimens have so far prevented indispensable laboratory studies to clarify its life cycle. Still, we tried to propose an explanation for our field observations

Characterization and Gene Expression of Vitellogenesis-Related Transcripts in the Hepatopancreas and Ovary of the Red Swamp Crayfish, Procambarus clarkii (Girard, 1852), during Reproductive Cycle

The major component of the animal egg yolk is the lipoglycoprotein vitellin, derived from its precursor vitellogenin (VTG), which is produced species-specifically in decapod crustaceans in the hepatopancreas and/or in the ovary of reproductive females. Previous studies on Procambarus clarkii vitellogenesis report the existence of two single VTGs. Here, from a multiple tissue transcriptome including ovaries and hepatopancreas of P. clarkii, we characterized four different VTG and two VTG-like transcriptomes encoding for the discoidal lipoprotein-high density lipoprotein/β-glucan binding protein (dLp/HDL-BGBP). The relative expression of the various genes was evaluated by quantitative Real-Time PCR in both the ovary and hepatopancreas of females at different reproductive stages (from immature until fully mature oocytes). These studies revealed tissue-specificity and a reproductive stage related expression for the VTGs and a constitutive expression in the hepatopancreas of dLp/HDL-BGBP independent from the reproductive stage. This study may lead to more detailed study of the vitellogenins, their transcription regulation, and to the determination of broader patterns of expression present in the female hepatopancreas and ovary during the vitellogenesis. These findings provide a starting point useful for two different practical aims. The first is related to studies on P. clarkii reproduction, since this species is highly appreciated on the market worldwide. The second is related to the study of new potential interference in P. clarkii reproduction to delay or inhibit the worldwide spread of this aggressively invasive species