Specific binding of the methyl binding domain protein 2 at the BRCA1-NBR2 locus

The methyl-CpG binding domain (MBD) proteins are key molecules in the interpretation of DNA methylation signals leading to gene silencing. We investigated their binding specificity at the constitutively methylated region of a CpG island containing the bidirectional promoter of the Breast cancer predisposition gene 1, BRCA1, and the Near BRCA1 2 (NBR2) gene. In HeLa cells, quantitative chromatin immunoprecipitation assays indicated that MBD2 is associated with the methylated region, while MeCP2 and MBD1 were not detected at this locus. MBD2 depletion (∼90%), mediated by a transgene expressing a small interfering RNA (siRNA), did not induce MeCP2 or MBD1 binding at the methylated area. Furthermore, the lack of MBD2 at the BRCA1-NBR2 CpG island is associated with an elevated level of NBR2 transcripts and with a significant reduction of induced-DNA-hypomethylation response. In MBD2 knockdown cells, transient expression of a Mbd2 cDNA, refractory to siRNA-mediated decay, shifted down the NBR2 mRNA level to that observed in unmodified HeLa cells. Variations in MBD2 levels did not affect BRCA1 expression despite its stimulation by DNA hypomethylation. Collectively, our data indicate that MBD2 has specific targets and its presence at these targets is indispensable for gene repression

Assessment of Several Empirical Relationships for Deriving Daily Means of UV-A Irradiance from Meteosat-Based Estimates of the Total Irradiance

International audienceDaily estimates of the solar UV-A radiation (315–400 nm) at the surface, anywhere, anytime, are needed in many epidemiology studies. Satellite-derived databases of solar total irradiance, combined with empirical relationships converting totals into daily means of UV-A irradiance I UV , are a means to satisfy such needs. Four empirical relationships are applied to three different databases: HelioClim-3 (versions 4 and 5) and CAMS Radiation Service—formerly known as MACC-RAD—derived from Meteosat images. The results of these combinations are compared to ground-based measurements located in mid-latitude Europe, mostly in Belgium. Whatever the database, the relationships of Podstawczynska (2010) and of Bilbao et al. (2011) exhibit very large underestimation and RMSE on the order of 40%–50% of the mean I UV. Better and more acceptable results are attained with the relationships proposed by Zavodska and Reichrt (1985) and that of Wald (2012). The relative RMSE is still large and in the range 10%–30% of the mean I UV. The correlation coefficients are large for all relationships. Each of them captures most of the variability contained in the UV measurements and can be used in studies where correlation plays a major role

Validation of TROPOMI Surface UV Radiation Product

The TROPOspheric Monitoring Instrument (TROPOMI) onboard the Sentinel-5 Precursor (S5P) satellite was launched on 13 October 2017 to provide the atmospheric composition for atmosphere and climate research. The S5P is a sun-synchronous polar-orbiting satellite providing global daily coverage. The TROPOMI swath is 2600 km wide, and the ground resolution for most data products is 7.2x3.5 km2 (5.6x3.5 km2 since 6 August 2019) at nadir. The Finnish Meteorological Institute (FMI) is responsible for the development and processing of the TROPOMI Surface Ultraviolet (UV) Radiation Product which includes 36 UV parameters in total. Ground-based data from 25 sites located in arctic, subarctic, temperate, equatorial and antarctic areas were used for validation of TROPOMI overpass irradiance at 305, 310, 324 and 380 nm, overpass erythemally weighted dose rate / UV index and erythemally weighted daily dose for the period from 1 January 2018 to 31 August 2019. The validation results showed that for most sites 60–80% of TROPOMI data was within ±20% from ground-based data for snow free surface conditions. The median relative differences to ground-based measurements of TROPOMI snow free surface daily doses were within ±10% and ±5% at two thirds and at half of the sites, respectively. At several sites more than 90% of clear sky TROPOMI data were within ±20% from ground-based measurements. Generally median relative differences between TROPOMI data and ground-based measurements were a little biased towards negative values, but at high latitudes where nonhomogeneous topography and albedo/snow conditions occurred, the negative bias was exceptionally high, from -30% to -65%. Positive biases of 10–15% were also found for mountainous sites due to challenging topography. The TROPOMI Surface UV Radiation Product includes quality flags to detect increased uncertainties in the data due to heterogeneous surface albedo and rough terrain which can be used to filter the data retrieved under challenging conditions

Instrumental characteristics and potential greenhouse gas measurement capabilities of the Compact High-Spectral-Resolution Infrared Spectrometer: CHRIS

International audienceGround-based high-spectral-resolution infrared measurements are an efficient way to obtain accurate tropospheric abundances of different gaseous species, in particular greenhouse gases (GHGs) such as CO2 and CH4. Many ground-based spectrometers are used in the NDACC and TCCON networks to validate the Level 2 satellite data, but their large dimensions and heavy mass make them inadequate for field campaigns. To overcome these problems, the use of portable spectrometers was recently investigated. In this context, this paper deals with the CHRIS (Compact High-Spectral-Resolution Infrared Spectrometer) prototype with unique characteristics such as its high spectral resolution (0.135 cm-1 nonapodized) and its wide spectral range (680 to 5200 cm-1). Its main objective is the characterization of gases and aerosols in the thermal and shortwave infrared regions. That is why it requires high radiometric precision and accuracy, which are achieved by performing spectral and radiometric calibrations that are described in this paper. Furthermore, CHRIS's capabilities to retrieve vertical CO2 and CH4 profiles are presented through a complete information content analysis, a channel selection and an error budget estimation in the attempt to join ongoing campaigns such as MAGIC (Monitoring of Atmospheric composition and Greenhouse gases through multi-Instruments Campaigns) to monitor GHGs and validate the actual and future space missions such as IASI-NG and Microcarb

Specific binding of the methyl binding domain protein 2 at the BRCA1-NBR2 locus

International audienceThe methyl-CpG binding domain (MBD) proteins are key molecules in the interpretation of DNA methylation signals leading to gene silencing. We investigated their binding specificity at the constitu-tively methylated region of a CpG island containing the bidirectional promoter of the Breast cancer predisposition gene 1, BRCA1, and the Near BRCA1 2 (NBR2) gene. In HeLa cells, quantitative chromatin immunoprecipitation assays indicated that MBD2 is associated with the methylated region, while MeCP2 and MBD1 were not detected at this locus. MBD2 depletion ($90%), mediated by a transgene expressing a small interfering RNA (siRNA), did not induce MeCP2 or MBD1 binding at the methylated area. Furthermore, the lack of MBD2 at the BRCA1-NBR2 CpG island is associated with an elevated level of NBR2 transcripts and with a significant reduction of induced-DNA-hypomethylation response. In MBD2 knockdown cells, transient expression of a Mbd2 cDNA, refractory to siRNA-mediated decay, shifted down the NBR2 mRNA level to that observed in unmodified HeLa cells. Variations in MBD2 levels did not affect BRCA1 expression despite its stimulation by DNA hypomethylation. Collectively, our data indicate that MBD2 has specific targets and its presence at these targets is indispensable for gene repression

Microphysical properties of mixed-phase & ice clouds retrieved from in situ airborne "Polar Nephelometer" measurements

International audienceIn this paper we present microphysical properties of natural clouds retrieved from an airborne "Polar Nephelometer" measurements. The retrieval was done by means of an iterative inversion method, which is based on the bi-component (water droplets and ice crystals) representation of ice and mixed phase cloud composition. The present study shows that experimental scattering phase functions of ice crystals are characterized by high information content with respect to the aspect ratio of ice crystals which can be estimated in addition to their effective size distributions

Inter-Comparison Campaign of Solar UVR Instruments under Clear Sky Conditions at Reunion Island (21 • S, 55 • E)

International audienceMeasurement of solar ultraviolet radiation (UVR) is important for the assessment of potential beneficial and adverse impacts on the biosphere, plants, animals, and humans. Excess solar UVR exposure in humans is associated with skin carcinogenesis and immunosuppression. Several factors influence solar UVR at the Earth's surface, such as latitude and cloud cover. Given the potential risks from solar UVR there is a need to measure solar UVR at different locations using effective instrumentation. Various instruments are available to measure solar UVR, but some are expensive and others are not portable, both restrictive variables for exposure assessments. Here, we compared solar UVR sensors commercialized at low or moderate cost to assess their performance and quality of measurements against a high-grade Bentham spectrometer. The inter-comparison campaign took place between March 2018 and February 2019 at Saint-Denis, La Réunion. Instruments evaluated included a Kipp&Zonen UVS-E-T radiometer, a Solar Light UV-Biometer, a SGLux UV-Cosine radiometer, and a Davis radiometer. Cloud fraction was considered using a SkyCamVision all-sky camera and the Tropospheric Ultraviolet Visible radiative transfer model was used to model clear-sky conditions. Overall, there was good reliability between the instruments over time, except for the Davis radiometer, which showed dependence on solar zenith angle. The Solar Light UV-Biometer and the Kipp&Zonen radiometer gave satisfactory results, while the low-cost SGLux radiometer performed better in clear sky conditions. Future studies should investigate temporal drift and stability over time

Solar UV Radiation in the Tropics: Human Exposure at Reunion Island (21° S, 55° E) during Summer Outdoor Activities

International audienceReunion Island is a popular tourist destination with sandy beaches, an active volcano (Piton de la Fournaise), and Piton des Neiges, the highest and most dominant geological feature on the island. Reunion is known to have high levels of solar ultraviolet radiation (UVR) with an ultraviolet index (UVI) which can reach 8 in winter and 16 in summer (climatological conditions). UVR has been linked to skin cancer, melanoma, and eye disease such as cataracts. The World Health Organization (WHO) devised the UVI as a tool for expressing UVR intensity. Thresholds ranging from low (UVI 1-2) to extreme (UVI > 11) were defined depending on the risk to human health. The purpose of the study was to assess UVR exposure levels over three of the busiest tourist sites on the island. UVR was measured over several hours along popular hiking trails around Piton de la Fournaise (PDF), Piton des Neiges (PDN), and St-Leu Beach (LEU). The results were compared with those recorded by the local UV station at Saint-Denis. In addition, cumulative standard erythemal dose (SED) was calculated. Results showed that UVI exposure at PDF, PDN, and LEU were extreme (>11) and reached maximum UVI levels of 21.1, 22.5, and 14.5, respectively. Cumulative SEDs were multiple times higher than the thresholds established by the Fitzpatrick skin phototype classification. UVI measurements at the three study sites showed that Reunion Island is exposed to extreme UVR conditions. Public awareness campaigns are needed to inform the population of the health risks related to UVR exposure

New Particle Formation observed in the close vicinity of a French megalopolis

International audienc