Importance of methodological choices in data manipulation for validating epileptic seizure detection models

Epilepsy is a chronic neurological disorder that affects a significant portion of the human population and imposes serious risks in the daily life. Despite advances in machine learning and IoT, small, non-stigmatizing wearable devices for continuous monitoring and detection in outpatient environments are not yet widely available. Part of the reason is the complexity of epilepsy itself, including highly imbalanced data, multimodal nature, and very subject-specific signatures. However, another problem is the heterogeneity of methodological approaches in research, leading to slower progress, difficulty in comparing results, and low reproducibility. Therefore, this article identifies a wide range of methodological decisions that must be made and reported when training and evaluating the performance of epilepsy detection systems. We characterize the influence of individual choices using a typical ensemble random-forest model and the publicly available CHB-MIT database, providing a broader picture of each decision and giving good-practice recommendations, based on our experience, where possible.RYC2021-032853-

Accelerating Change for Women and Girls: The Role of Women's Funds

In recent years, interest in philanthropy for and by women has intensified, accompanied by a growing acceptance of the idea that philanthropic investments in women and girls can accelerate positive change in communities. To understand this evolution in thinking and practice within philanthropy, the Foundation Center partnered with the Women's Funding Network, a global movement of women's funds, to chart the current landscape of philanthropy focused on women and girls and document the specific role played by women's funds

A Multimodal Dataset for Automatic Edge-AI Cough Detection

Counting the number of times a patient coughs per day is an essential biomarker in determining treatment efficacy for novel antitussive therapies and personalizing patient care. Automatic cough counting tools must provide accurate information, while running on a lightweight, portable device that protects the patient’s privacy. Several devices and algorithms have been developed for cough counting, but many use only error-prone audio signals, rely on offline processing that compromises data privacy, or utilize processing and memory-intensive neural networks that require more hardware resources than can fit on a wearable device. Therefore, there is a need for wearable devices that employ multimodal sensors to perform accurate, privacy-preserving, automatic cough counting algorithms directly on the device in an edge Artificial Intelligence (edge-AI) fashion. To advance this research field, we contribute the first publicly accessible cough counting dataset of multimodal biosignals. The database contains nearly 4 hours of biosignal data, with both acoustic and kinematic modalities, covering 4,300 annotated cough events from 15 subjects. Furthermore, a variety of non-cough sounds and motion scenarios mimicking daily life activities are also present, which the research community can use to accelerate machine learning (ML) algorithm development. A technical validation of the dataset reveals that it represents a wide variety of signal-to- noise ratios, which can be expected in a real-life use case, as well as consistency across experimental trials. Finally, to demonstrate the usability of the dataset, we train a simple cough vs non-cough signal classifier that obtains a 91% sensitivity, 92% specificity, and 80% precision on unseen test subject data. Such edge-friendly AI algorithms have the potential to provide continuous ambulatory monitoring of the numerous chronic cough patients.RYC2021-032853-

Decentralized Federated Learning for Epileptic Seizures Detection in Low-Power Wearable Systems

In healthcare, data privacy of patients regulations prohibits data from being moved outside the hospital, preventing international medical datasets from being centralized for AI training. Federated learning (FL) is a data privacy-focused method that trains a global model by aggregating local models from hospitals. Existing FL techniques adopt a central server-based network topology, where the server assembles the local models trained in each hospital to create a global model. However, the server could be a point of failure, and models trained in FL usually have worse performance than those trained in the centralized learning manner when the patient's data are not independent and identically distributed (Non-IID) in the hospitals. This paper presents a decentralized FL framework, including training with adaptive ensemble learning and a deployment phase using knowledge distillation. The adaptive ensemble learning step in the training phase leads to the acquisition of a specific model for each hospital that is the optimal combination of local models and models from other available hospitals. This step solves the non-IID challenges in each hospital. The deployment phase adjusts the model's complexity to meet the resource constraints of wearable systems. We evaluated the performance of our approach on edge computing platforms using EPILEPSIAE and TUSZ databases, which are public epilepsy datasets.RYC2021-032853-

Layer-Wise Learning Framework for Efficient DNN Deployment in Biomedical Wearable Systems

The development of low-power wearable systems requires specialized techniques to accommodate their unique requirements and constraints. While significant advancements have been made in the inference phase of artificial intelligence, the training phase remains a challenge, particularly for biomedical wearable systems. Traditional training algorithms might not be suitable for these applications due to the substantial memory requirements and high computational costs associated with processing the large number of bits involved in neural network operations. In this paper, we introduce a novel learning procedure specifically designed for low-power wearable systems, dubbed Bio-BPfree (deep neural network training without backpropagation for low-power wearable systems). Using a two-class classification task, Bio-BPfree replaces conventional forward and backward backpropagation passes with four forward passes, two for data of the positive class and two for data of the negative class. Each layer is equipped with a unique objective function aimed at minimizing the distance between data points within the same class while maximizing the distance between data points from different classes. Our experimental results, which were obtained by conducting rigorous evaluations on the MIT-BIH dataset that features electrocardiogram (ECG) signals, effectively demonstrate the superior performance and suitability of Bio-BPfree for two-class classification tasks, particularly within the challenging environment of low-power wearable systems designed for continuous health monitoring and assessment.RYC2021-032853-

L\'evy-areas of Ornstein-Uhlenbeck processes in Hilbert-spaces

In this paper we investigate the existence and some useful properties of the L\'evy areas of Ornstein-Uhlenbeck processes associated to Hilbert-space-valued fractional Brownian-motions with Hurst parameter $H\in (1/3,1/2]$. We prove that this stochastic area has a H\"older-continuous version with sufficiently large H\"older-exponent and that can be approximated by smooth areas. In addition, we prove the stationarity of this area.Comment: 18 page

Recombinant vaccines in 2022 : a perspective from the cell factory

The last big outbreaks of Ebola fever in Africa, the thousands of avian influenza outbreaks across Europe, Asia, North America and Africa, the emergence of monkeypox virus in Europe and specially the COVID-19 pandemics have globally stressed the need for efficient, cost-effective vaccines against infectious diseases. Ideally, they should be based on transversal technologies of wide applicability. In this context, and pushed by the above-mentioned epidemiological needs, new and highly sophisticated DNA-or RNA-based vaccination strategies have been recently developed and applied at large-scale. Being very promising and effective, they still need to be assessed regarding the level of conferred long-term protection. Despite these fast-developing approaches, subunit vaccines, based on recombinant proteins obtained by conventional genetic engineering, still show a wide spectrum of interesting potentialities and an important margin for further development. In the 80's, the first vaccination attempts with recombinant vaccines consisted in single structural proteins from viral pathogens, administered as soluble plain versions. In contrast, more complex formulations of recombinant antigens with particular geometries are progressively generated and explored in an attempt to mimic the multifaceted set of stimuli offered to the immune system by replicating pathogens. The diversity of recombinant antimicrobial vaccines and vaccine prototypes is revised here considering the cell factory types, through relevant examples of prototypes under development as well as already approved products

Shallow slow earthquakes to decipher future catastrophic earthquakes in the Guerrero seismic gap

海底地震計記録で読み解く地震空白域の将来 --メキシコ・ゲレロ州沖合の地震空白域のスロー地震活動の発見--. 京都大学プレスリリース. 2021-06-29.The Guerrero seismic gap is presumed to be a major source of seismic and tsunami hazard along the Mexican subduction zone. Until recently, there were limited observations at the shallow portion of the plate interface offshore Guerrero, so we deployed instruments there to better characterize the extent of the seismogenic zone. Here we report the discovery of episodic shallow tremors and potential slow slip events in Guerrero offshore. Their distribution, together with that of repeating earthquakes, seismicity, residual gravity and bathymetry, suggest that a portion of the shallow plate interface in the gap undergoes stable slip. This mechanical condition may not only explain the long return period of large earthquakes inside the gap, but also reveals why the rupture from past M < 8 earthquakes on adjacent megathrust segments did not propagate into the gap to result in much larger events. However, dynamic rupture effects could drive one of these nearby earthquakes to break through the entire Guerrero seismic gap

Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

BACKGROUND: Miscanthus sinensis is a high yielding perennial grass species with great potential as a bioenergy feedstock. One of the challenges that currently impedes commercial cellulosic biofuel production is the technical difficulty to efficiently convert lignocellulosic biomass into biofuel. The development of feedstocks with better biomass quality will improve conversion efficiency and the sustainability of the value-chain. Progress in the genetic improvement of biomass quality may be substantially expedited by the development of genetic markers associated to quality traits, which can be used in a marker-assisted selection program. RESULTS: To this end, a mapping population was developed by crossing two parents of contrasting cell wall composition. The performance of 182 F1 offspring individuals along with the parents was evaluated in a field trial with a randomized block design with three replicates. Plants were phenotyped for cell wall composition and conversion efficiency characters in the second and third growth season after establishment. A new SNP-based genetic map for M. sinensis was built using a genotyping-by-sequencing (GBS) approach, which resulted in 464 short-sequence uniparental markers that formed 16 linkage groups in the male map and 17 linkage groups in the female map. A total of 86 QTLs for a variety of biomass quality characteristics were identified, 20 of which were detected in both growth seasons. Twenty QTLs were directly associated to different conversion efficiency characters. Marker sequences were aligned to the sorghum reference genome to facilitate cross-species comparisons. Analyses revealed that for some traits previously identified QTLs in sorghum occurred in homologous regions on the same chromosome. CONCLUSION: In this work we report for the first time the genetic mapping of cell wall composition and bioconversion traits in the bioenergy crop miscanthus. These results are a first step towards the development of marker-assisted selection programs in miscanthus to improve biomass quality and facilitate its use as feedstock for biofuel production

Parallelizing the Chambolle Algorithm for Performance-Optimized Mapping on FPGA Devices

The performance and the efficiency of recent computing platforms have been deeply influenced by the widespread adoption of hardware accelerators, such as Graphics Processing Units (GPUs) or Field Programmable Gate Arrays (FPGAs), which are often employed to support the tasks of General Purpose Processors (GPP). One of the main advantages of these accelerators over their sequential counterparts (GPPs) is their ability of performing massive parallel computation. However, in order to exploit this competitive edge, it is necessary to extract the parallelism from the target algorithm to be executed, which is in general a very challenging task. This concept is demonstrated, for instance, by the poor performance achieved on relevant multimedia algorithms, such as Chambolle, which is a well-known algorithm employed for the optical flow estimation. The implementations of this algorithm that can be found in the state of the art are generally based on GPUs, but barely improve the performance that can be obtained with a powerful GPP. In this paper, we propose a novel approach to extract the parallelism from computation-intensive multimedia algorithms, which includes an analysis of their dependency schema and an assessment of their data reuse. We then perform a thorough analysis of the Chambolle algorithm, providing a formal proof of its inner data dependencies and locality properties. Then, we exploit the considerations drawn from this analysis by proposing an architectural template that takes advantage of the fine-grained parallelism of FPGA devices. Moreover, since the proposed template can be instantiated with different parameters, we also propose a design metric, the expansion rate, to help the designer in the estimation of the efficiency and performance of the different instances, making it possible to select the right one before the implementation phase. We finally show, by means of experimental results, how the proposed analysis and parallelization approach leads to the design of efficient and high-performance FPGA-based implementations that are orders of magnitude faster than the state-of-the-art ones