111 research outputs found

    Time Series Measurements of Chlorophyll Fluorescence in the Oceanic Bottom Boundary Layer With a Multisensor Fiber-Optic Fluorometer

    Get PDF
    An in situ multisensor fiber-optic fluorometer (MFF) has been developed to acquire long-term chlorophyll fluorescence measurements in the oceanic bottom boundary layer to characterize the finescale pigment structure at vertical spatial scales comparable to physical measurements. The eight fluorescence sensors of the MFF are composed of dual optical fibers of varying lengths (1.5-8 m), with the fiber ends oriented at 30 degrees to each other and enclosed by a small light baffle. Strobe excitation blue light is passed through one of each pair of optical fibers and stimulated chlorophyll fluorescence is carried back to a photomultiplier. Two sets of four fluorescence sensors assigned to high- and low-sensitivity photomultiplier detectors enable chlorophyll a measurements in two ranges, 0-50 mg m(-3) and 0-200 mg m(-3), respectively. Aspects of the design of the fiber-optic sensor are described that were intended to optimize detection of fluorescence signals and minimize interference by ambient light. The fiber-optic sensor outputs were stable with minimal instrument drift during long-term field operations, and measurements were not affected by turbidity and ambient light. A vertical array of fiber-optic fluorescence sensors supported on a tripod has been deployed at coastal sites for up to seven weeks and chlorophyll fluorescence was obtained with sufficiently high vertical spatial and temporal resolution

    Chloropigment Distribution and Transport On the Inner Shelf Off Duck, North Carolina

    Get PDF
    The distribution and movement of chloropigments (chlorophylls and associated degradation products) in the bottom boundary layer near Duck, North Carolina, were examined during July and August 1994. Time series of chloropigment fluorescence, current velocity, and surface wave properties were acquired from instruments mounted on a bottom tripod set at 20 m depth. These data were combined with moored current meter measurements, meteorological data, and shipboard surveys in a comparative assessment of physical processes and chloropigment distribution over a wide range of temporal and spatial scales. Two dominant scales of chloropigment variation were observed. On numerous occasions, small-scale (order m) structure in the near-bottom fluorescence field was observed, even in the absence of identifiable structure in the temperature and salinity fields. Over larger timescales and space scales, variations in fluorescence were related to changes in water mass properties that could be attributed to alternating events of upwelling and downwelling. This view was reinforced by shipboard measurements that revealed correlations between fluorescence and hydrographic fields, both of which were modified by wind-forced upwelling and downwelling and by the advection of low-salinity water from Chesapeake Bay. Local resuspension of sediments did not contribute appreciably to the near-bottom pigment load seen at the tripod, because of low bottom stress. Estimates of chloropigment flux indicated a net shoreward transport of chloropigments in the lower boundary layer. However, the rapid fluctuations of currents and pigment concentrations gave rise to large and frequent variations in chloropigment fluxes, generating uncertainty in extrapolations of this finding to longer timescales

    A new US polar research vessel for the twenty-first century

    Get PDF
    Author Posting. © The Oceanography Society, 2012. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 25, no. 3 (2012): 204-207, doi:10.5670/oceanog.2012.96.Scientific and political interests at the poles are significant and rapidly increasing, driven in part by the effects of climate change and emerging geopolitical realities. The polar regions provide important services to global ecosystems and humankind, ranging from food and energy to freshwater and biodiversity. Yet the poles are experiencing changes at rates that far outpace the rest of the planet. Coastal Arctic communities are impacted by climate change through coastal erosion, sea level rise, ice loss, and altered marine food webs, threatening the future of their subsistence lifestyle. Climate change has dramatically increased the melt rate of ice sheets and glaciers at both poles and has the potential to significantly raise sea level worldwide. Oil and gas drilling as well as transportation in the Arctic have reached all-time high levels, in part because of reduced sea ice cover. Tourism is a growing industry at both poles, bringing more than 20,000 tourists each year to the western Antarctic Peninsula alone. The collateral effects of human activities include the potential for pollution of the marine environment, particularly through spills of hydrocarbons. Our ability to understand the effects of such activities and mishaps is limited, particularly in ice-covered areas during winter

    The rise and fall of methanotrophy following a deepwater oil-well blowout

    Get PDF
    The blowout of the Macondo oil well in the Gulf of Mexico in April 2010 injected up to 500,000 tonnes of natural gas, mainly methane, into the deep sea1. Most of the methane released was thought to have been consumed by marine microbes between July and August 20102, 3. Here, we report spatially extensive measurements of methane concentrations and oxidation rates in the nine months following the spill. We show that although gas-rich deepwater plumes were a short-lived feature, water column concentrations of methane remained above background levels throughout the rest of the year. Rates of microbial methane oxidation peaked in the deepwater plumes in May and early June, coincident with a rapid rise in the abundance of known and new methane-oxidizing microbes. At this time, rates of methane oxidation reached up to 5,900 nmol l−1 d−1—the highest rates documented in the global pelagic ocean before the blowout4. Rates of methane oxidation fell to less than 50 nmol l−1 d−1 in late June, and continued to decline throughout the remainder of the year. We suggest the precipitous drop in methane consumption in late June, despite the persistence of methane in the water column, underscores the important role that physiological and environmental factors play in constraining the activity of methane-oxidizing bacteria in the Gulf of Mexico

    Estimating the Benthic Efflux of Dissolved Iron on the Ross Sea Continental Shelf

    Get PDF
    Continental margin sediments provide a potentially large but poorly constrained source of dissolved iron (dFe) to the upper ocean. The Ross Sea continental shelf is one region where this benthic supply is thought to play a key role in regulating the magnitude of seasonal primary production. Here we present data collected during austral summer 2012 that reveal contrasting low surface (0.08 +/- 0.07 nM) and elevated near-seafloor (0.74 +/- 0.47 nM) dFe concentrations. Combining these observations with results from a high-resolution physical circulation model, we estimate dFe efflux of 5.8 x 10(7) mol yr(-1) from the deeper portions (\u3e400m) of the Ross Sea continental shelf; more than sufficient to account for the inferred winter reserve dFe inventory at the onset of the growing season. In addition, elevated dFe concentrations observed over shallower bathymetry suggest that such features provide additional inputs of dFe to the euphotic zone throughout the year

    Treatment of enterohemorrhagic Escherichia coli (EHEC) infection and hemolytic uremic syndrome (HUS)

    Get PDF
    Verotoxigenic Escherichia coli (VTEC) are a specialized group of E. coli that can cause severe colonic disease and renal failure. Their pathogenicity derives from virulence factors that enable the bacteria to colonize the colon and deliver extremely powerful toxins known as verotoxins (VT) or Shiga toxins (Stx) to the systemic circulation. The recent devastating E. coli O104:H4 epidemic in Europe has shown how helpless medical professionals are in terms of offering effective therapies. By examining the sources and distribution of these bacteria, and how they cause disease, we will be in a better position to prevent and treat the inevitable future cases of sporadic disease and victims of common source outbreaks. Due to the complexity of pathogenesis, it is likely a multitargeted approach is warranted. Developments in terms of these treatments are discussed

    Development of a New Tacaribe Arenavirus Infection Model and Its Use to Explore Antiviral Activity of a Novel Aristeromycin Analog

    Get PDF
    Background A growing number of arenaviruses can cause a devastating viral hemorrhagic fever (VHF) syndrome. They pose a public health threat as emerging viruses and because of their potential use as bioterror agents. All of the highly pathogenic New World arenaviruses (NWA) phylogenetically segregate into clade B and require maximum biosafety containment facilities for their study. Tacaribe virus (TCRV) is a nonpathogenic member of clade B that is closely related to the VHF arenaviruses at the amino acid level. Despite this relatedness, TCRV lacks the ability to antagonize the host interferon (IFN) response, which likely contributes to its inability to cause disease in animals other than newborn mice. Methodology/Principal Findings Here we describe a new mouse model based on TCRV challenge of AG129 IFN-α/β and -γ receptor-deficient mice. Titration of the virus by intraperitoneal (i.p.) challenge of AG129 mice resulted in an LD50 of ∼100 fifty percent cell culture infectious doses. Virus replication was evident in the serum, liver, lung, spleen, and brain 4–8 days after inoculation. MY-24, an aristeromycin derivative active against TCRV in cell culture at 0.9 µM, administered i.p. once daily for 7 days, offered highly significant (P\u3c0.001) protection against mortality in the AG129 mouse TCRV infection model, without appreciably reducing viral burden. In contrast, in a hamster model of arenaviral hemorrhagic fever based on challenge with clade A Pichinde arenavirus, MY-24 did not offer significant protection against mortality. Conclusions/Significance MY-24 is believed to act as an inhibitor of S-adenosyl-L-homocysteine hydrolase, but our findings suggest that it may ameliorate disease by blunting the effects of the host response that play a role in disease pathogenesis. The new AG129 mouse TCRV infection model provides a safe and cost-effective means to conduct early-stage pre-clinical evaluations of candidate antiviral therapies that target clade B arenaviruses
    • …
    corecore