A source of gamma rays coincident with the shell of the supernova remnant CTB 80

CTB 80 (G69.0+2.7) is a relatively old (50--80 kyr) supernova remnant (SNR) with a complex radio morphology showing three extended radio arms and a radio and X-ray nebula near the location of the pulsar PSR B1951+32. We report on a study of the GeV emission in the region of CTB 80 with \emph{Fermi}-LAT data. An extended source with a size of 1.3$^\circ$, matching the size of the infrared shell associated to the SNR, was discovered. The GeV emission, detected up to an energy of $\sim 20$ GeV, is more significant at the location of the northern radio arm where previous observations imply that the SNR shock is interacting with ambient material. Both hadronic and leptonic scenarios can reproduce the multiwavelength data reasonably well. The hadronic cosmic ray energy density required is considerably larger than the local Galactic value and the gamma-ray leptonic emission is mainly due to bremsstrahlung interactions. We conclude that GeV particles are still trapped or accelerated by the SNR producing the observed high-energy emission when interacting with ambient material.Comment: 7 pages, 5 figures. To appear in MNRA

Molecular Diagnostics in the Mycosphaerella Leaf Spot Disease Complex of Banana and for Radopholus similis

Mycosphaerella leaf spots and nematodes threaten banana cultivation worldwide. The Mycosphaerella disease complex involves three related ascomycetous fungi: Mycosphaerella fijiensis, M. musicola and M. eumusae. The exact distribution of these three species and their disease epidemiology remain unclear, since their symptoms and life cycles are rather similar. Diagnosing these diseases and the respective causal agents is based on the presence of host symptoms and fungal fruiting structures, but is time consuming and not conducive to preventive management. In the present study, we developed rapid and robust species-specific diagnostic tools to detect and quantify M. fijiensis, M. musicola and M. eumusae. Conventional species-specific PCR primers were developed based on the actin gene that detected as little as 100, 1 and 10 pg/µl DNA from, respectively, M. fijiensis, M. musicola and M. eumusae. Furthermore, TaqMan real-time quantitative PCR assays that were developed based on the ß-tubulin gene detected quantities as low as 1 pg/µl DNA of each species from pure cultures and 1.6 pg/µl DNA/mg of M. fijiensis from dry leaf tissue. The efficacy of the tests was validated using naturally infected banana leaves. Similar technology has been used to develop a quantitative PCR assay for the banana burrowing nematode, Radopholus similis, which is currently being validate

Densitometry and Thermometry of Starburst Galaxies

With a goal toward deriving the physical conditions in external galaxies, we present a survey of formaldehyde (H2CO) and ammonia (NH3) emission and absorption in a sample of starburst galaxies using the Green Bank Telescope. By extending well-established techniques used to derive the spatial density in star formation regions in our own Galaxy, we show how the relative intensity of the 1(10)-1(11) and 2(11)-2(12) K-doublet transitions of H2CO can provide an accurate densitometer for the active star formation environments found in starburst galaxies (c.f. Mangum et al. 2008). Similarly, we employ the well-established technique of using the relative intensities of the (1,1), (2,2), and (4,4) transitions of NH3 to derive the kinetic temperature in starburst galaxies. Our measurements of the kinetic temperature constrained spatial density in our starburst galaxy sample represent the first mean density measurements made toward starburst galaxies. We note a disparity between kinetic temperature measurements derived assuming direct coupling to dust and those derived from our NH3 measurements which points to the absolute need for direct gas kinetic temperature measurements using an appropriate molecular probe. Finally, our spatial density measurements point to a rough constancy to the spatial density (10^{4.5} to 10^{5.5} cm^{-3}) in our starburst galaxy sample. This implies that the Schmidt-Kennicutt relation between L_{IR} and M_{dense}: (1) Is a measure of the dense gas mass reservoir available to form stars, and (2) Is not directly dependent upon a higher average density driving the star formation process in the most luminous starburst galaxies.Comment: 4 pages, to appear in proceedings of The 5th Zermatt ISM Symposiu

Identification and geographic distribution of genetic groups of Erysiphe necator in Chilean vineyards

The grapevine powdery mildew, caused by the biotrophic fungus Erysiphe necator, is one of the most important diseases of this crop in Chile. We converted existing single nucleotide polymorphisms in β-tubulin, rDNA intergenic spacer region 1 and eburicol 14-α-demethylase into three cleaved amplified polymorphic sequences (CAPS). These CAPS markers were used for the genetic characterization of Erysiphe necator isolates collected on clusters of Vitis vinifera cv. 'Cabernet Sauvignon' in 23 vineyards across Chile. Among the 105 Chilean isolates analyzed, 103 revealed to belong to genetic group B and 2 to genetic group A. These results correspond to the first report of the presence of genetic groups A and B of E. necator in Chile

Distorted cyclotron line profile in Cep X-4 as observed by NuSTAR

We present spectral analysis of NuSTAR and Swift observations of Cep X-4 during its outburst in 2014. We observed the source once during the peak of the outburst and once during the decay, finding good agreement in the spectral shape between the observations. We describe the continuum using a powerlaw with a Fermi-Dirac cutoff at high energies. Cep X-4 has a very strong cyclotron resonant scattering feature (CRSF) around 30 keV. A simple absorption-like line with a Gaussian optical depth or a pseudo-Lorentzian profile both fail to describe the shape of the CRSF accurately, leaving significant deviations at the red side of the line. We characterize this asymmetry with a second absorption feature around 19 keV. The line energy of the CRSF, which is not influenced by the addition of this feature, shows a small but significant positive luminosity dependence. With luminosities between (1-6)e36 erg/s, Cep X-4 is below the theoretical limit where such a correlation is expected. This behavior is similar to Vela X-1 and we discuss parallels between the two systems.Comment: 6 pages, 4 figure, accepted for publication in ApJ letter

Recovery of acetoclastic activity in anaerobic granular sludge, monitored by methanogenic activity measurements and image analysis

The specific acetoclastic activity (SAA) of anaerobic granular sludge was recovered in a lab scale EGSB reactor. The inoculum presented a very low acetoclastic activity (0.81+/-2.48mg COD-CH4/gVSS.day). Ethanol was fed at a COD concentration of 1.5g/L, as sole organic carbon source to promote the biogas production through the hydrogenophilic pathway. During the operation period the specific methanogenic activity (SMA)1 in the presence of acetate, propionate, butyrate, ethanol and H2/CO2, and the biomass morphology were quantified. The SAA steadily increased as expected by the reactor performance, achieving a value of 183+/-13mg COD-CH4/gVSS.day at day 108. From the SMA results it was suggested that, until day 62, the initial methane production rate was dominated by the hydrogenotrophic population and afterwards, the developed acetoclastic activity started to play a role in the initial methane production from ethanol. Until day 62 the ratio between the filaments length and aggregates projected area (LfA)2 increased due to the breakdown of granules inside the reactor, after that decreased and granules development was simultaneous with the increase of the SAA. Percentage of aggregates in size range 0.1 to 1mm (equivalent diameter) increased until day 40 due to granules fragmentation. When the system achieved a steady state, the aggregates size increased

Análisis de imagen para la cuantificación de cambios morfológicos en biomasa granular, inducidos por la presencia de nitrato en reactores EGSB

Cuatro reactores EGSB (R1-R4) fueron operados a velocidades de carga orgánica de 10 kgCOD/(m³.d), tiempos de retención hidráulicos de 3.6 h, velocidades superficiales de 10 m/h y diferentes concentraciones de nitrato a la entrada, 0, 20, 60 y 100 mgN-NO3-/L en R1, R2, R3 and R4, respectivamente. Después de 20 días de operación continua, la biomasa granular fue caracterizada en términos de: (i) morfología por análisis de imagen cuantitativo; (ii) actividad metanogénica específica en presencia de acetato, butirato, propionato, etanol y una mezcla gaseosa de H2CO2; velocidad de sedimentación. El parámetro LfA, definido como el cuociente entre la longitud total de filamentos y el área total proyectada, fue determinado y se observó que es suficientemente sensible para la cuantificación de diferencias morfológicas inducidas por la presencia de nitrato. Aunque el crecimiento de estructuras filamentosas en la superficie de los gránulos fue evidente, no hubo una disminución notable en la velocidad de sedimentación de los gránulos, probablemente porque durante el período de operación los gránulos crecieron en tamaño. En el reactor R4 se observó un mayor washout que en R1, R2 y R3.Fundação para a Ciência e Tecnologia (FCT

Image analysis to quantify morphological changes in granular sludge induced by nitrate in EGSB reactors

Four EGSB reactors (R1 to R4) were operated at an organic loading rate of 10 kgCOD/(m³.d), hydraulic retention time of 3.6 h, upflow velocity of 10 m/h and different influent nitrate concentrations (0, 20, 60 and 100 mgN-NO_3-/L for R1, R2, R3 and R4, respectively. After about 20 days of operation, the granular sludge was characterized for: (i) morphology by quantitative image analysis; (ii) specific methanogenic activity in the presence of acetate, propionate, butyrate, ethanol and H_2/CO_2; (iii) settling velocity. LfA parameter, defined as the ratio of total filaments length to total projected area, was determined and was sensitive to quantify the different surface morphology, induced by nitrate to the granular sludge. Although the growth of filamentous structures was evident, no significant decrease on the settling velocity was observed, most likely because granules grew during the trial period. A higher washout occurred in R4, as compared to R1, R2 and R3.Grant SFRH/BD/3187/2000.Fundação para a Ciência e a Tecnologia (FCT) – PRAXIS XXI/BD/20325/99

Quantitative image analysis as a diagnostic tool for identifying structural changes during a revival process of anaerobic granular sludge

Due to unspecified operational problems, the specific acetoclastic activity (SAA) of the anaerobic granular sludge present in an industrial UASB reactor was considerably damaged (from 250 to less than 10mL CH4@STP/gVSS.d), significantly reducing the biogas production of that industrial unit. The hydrogenotrophic methanogenic activity exhibited a value of 600mL CH4@STP/gVSS.d, the settling velocity was 31.479.8 m/h, the average equivalent diameter was 0.9270.43mm, and about 70% of the VSS were structured in aggregates larger than 1mm. In order to study the recovery of the SAA, this sludge was collected and inoculated in a lab-scale expanded granular sludge blanket (EGSB) reactor. Ethanol was fed as the sole carbon source during a trial period of 106 days. Process monitoring included COD removal efficiency, methane production, and periodic determination of the specific methanogenic activity in the presence of acetate, propionate, butyrate, ethanol and H2/CO2. Quantitative image analysis allowed for information to be obtained on granular fragmentation/erosion and filaments release. During the first operational period, biogas production was mainly due to the hydrogenotrophic activity. However, after 40 days, the SAA steadily increased achieving a maximum value of 183713mL CH4@STP/gVSS.d. The onset of SAA recovery, granules breakdown and filaments release to the bulk occurred simultaneously. Further increase in SAA was accompanied by granular growth. In the last 25 days of operation, the size distribution was stable with more than 80% of projected area of aggregates corresponding to granules larger than 1mm (equivalent diameter). Confocal images from FISH hybridized sections of the granules showed that after SAA recovery, the granules developed an organized structure where an acidogenic/acetogenic external layer was apparent. Granular fragmentation and increase of filaments in the bulk, simultaneously with the increase in the acetoclastic activity are described for the first time and might represent a structural response of granular sludge to promote the optimal substrate uptake at minimal diffusion limitations.Fundação para a Ciência e a Tecnologia (FCT) - Grants SFRH/BD/3187/2000, SFRH/BD/13317/2003, Project POCTI/BIO/37934/2001 Grants SFRH/BD/3187/2000, SFRH/BD/13317/200