Historical Perspectives on AVHRR NDVI and Vegetation Drought Monitoring

No abstract availabl

A Network-Based Meta-Population Approach to Model Rift Valley Fever Epidemics

Rift Valley fever virus (RVFV) has been expanding its geographical distribution with important implications for both human and animal health. The emergence of Rift Valley fever (RVF) in the Middle East, and its continuing presence in many areas of Africa, has negatively impacted both medical and veterinary infrastructures and human health. Furthermore, worldwide attention should be directed towards the broader infection dynamics of RVFV. We propose a new compartmentalized model of RVF and the related ordinary differential equations to assess disease spread in both time and space; with the latter driven as a function of contact networks. The model is based on weighted contact networks, where nodes of the networks represent geographical regions and the weights represent the level of contact between regional pairings for each set of species. The inclusion of human, animal, and vector movements among regions is new to RVF modeling. The movement of the infected individuals is not only treated as a possibility, but also an actuality that can be incorporated into the model. We have tested, calibrated, and evaluated the model using data from the recent 2010 RVF outbreak in South Africa as a case study; mapping the epidemic spread within and among three South African provinces. An extensive set of simulation results shows the potential of the proposed approach for accurately modeling the RVF spreading process in additional regions of the world. The benefits of the proposed model are twofold: not only can the model differentiate the maximum number of infected individuals among different provinces, but also it can reproduce the different starting times of the outbreak in multiple locations. Finally, the exact value of the reproduction number is numerically computed and upper and lower bounds for the reproduction number are analytically derived in the case of homogeneous populations.Comment: published on Journal of Theoretical biolog

Rift Valley Fever Prediction and Risk Mapping: 2014-2015 Season

Extremes in either direction (+-) of precipitation temperature have significant implications for disease vectors and pathogen emergence and spread Magnitude of ENSO influence on precipitation temperature cannot be currently predicted rely on average history and patterns. Timing of event and emergence disease can be exploited (GAP) in to undertake vector control and preparedness measures. Currently - no risk for ecologically-coupled RVFV activity however we need to be vigilant during the coming fall season due the ongoing buildup of energy in the central Pacific Ocean. Potential for the dual-use of the RVF Monitor system for other VBDs Need to invest in early ground surveillance and the use of rapid field diagnostic capabilities for vector identification and virus isolation

Epidemiologic and Environmental Risk Factors of Rift Valley Fever in Southern Africa from 2008 to 2011

Background: Rift Valley fever (RVF) outbreaks have been associated with periods of widespread and above normal rainfall over several months. Knowledge on the environmental factors influencing disease transmission dynamics has provided the basis for developing models to predict RVF outbreaks in Africa. From 2008 to 2011, South Africa experienced the worst wave of RVF outbreaks in almost 40 years. We investigated rainfall associated environmental factors in southern Africa preceding these outbreaks. Methods: RVF epizootic records obtained from the World Animal Health Information Database (WAHID), documenting livestock species affected, location, and time, were analyzed. Environmental variables including rainfall and satellite-derived normalized difference vegetation index (NDVI) data were collected and assessed in outbreak regions to understand the underlying drivers of the outbreaks. Results: The predominant domestic vertebrate species affected in 2008 and 2009 were cattle, when outbreaks were concentrated in the eastern provinces of South Africa. In 2010 and 2011, outbreaks occurred in the interior and southern provinces affecting over 16,000 sheep. The highest number of cases occurred between January and April but epidemics occurred in different regions every year, moving from the northeast of South Africa toward the southwest with each progressing year. The outbreaks showed a pattern of increased rainfall preceding epizootics ranging from 9 to 152 days; however, NDVI and rainfall were less correlated with the start of the outbreaks than has been observed in eastern Africa. Conclusions: Analyses of the multiyear RVF outbreaks of 2008 to 2011 in South Africa indicated that rainfall, NDVI, and other environmental and geographical factors, such as land use, drainage, and topography, play a role in disease emergence. Current and future investigations into these factors will be able to contribute to improving spatial accuracy of models to map risk areas, allowing adequate time for preparation and prevention before an outbreak occurs

Assessing vegetation response to soil moisture fluctuation under extreme drought using sentinel-2

© 2018 by the authors. The aim of this study was to determine the extent to which Sentinel-2 Normalised Difference Vegetation Index (NDVI) reflects soil moisture conditions, and whether this product offers an improvement over Landsat-8. Based on drought exposure, cloud-free imagery availability, and measured soil moisture, five sites in the Southwestern United States were selected. These sites, normally dry to arid, were in various states of drought. A secondary focus was therefore the performance of the NDVI under extreme conditions. Following supervised classification, the NDVI values for one-kilometre radius areas were calculated. Sentinel-2 NDVI variants using Spectral Bands 8 (10 m spatial resolution), 5, 6, 7, and 8A (20 m spatial resolution) were calculated. Landsat-8 NDVI was calculated at 30 m spatial resolution. Pearson correlation analysis was undertaken for NDVI against moisture at various depths. To assess the difference in correlation strength, a principal component analysis was performed on the combination of all bands and the combination of the new red-edge bands. Performance of the red-edge NDVI against the standard near infrared (NIR) was then evaluated using a Steiger comparison. No significant correlations between Landsat-8 NDVI and soil moisture were found. Significant correlations at depths of less than 30 cm were present between Sentinel-2 NDVI and soil moisture at three sites. The remaining two sites were characterised by low vegetation cover, suggesting a cover threshold of approximately 30-40% is required for a correlation to be present. At all sites of significant positive moisture to NDVI correlation, the linear combination of the red-edge bands produced stronger correlations than the poorer spectral but higher spatial resolution band. NDVI calculated using the higher spectral resolution bands may therefore be of greater use in this context than the higher spatial resolution option. Results suggest potential for the application of Sentinel-2 NDVI in soil moisture monitoring, even in extreme environments. To the best of our knowledge, this paper represents the first study of this kind using Sentinel-2

Climate Change, Extreme Weather Events, and Fungal Disease Emergence and Spread

Empirical evidence from multiple sources show the Earth has been warming since the late 19th century. More recently, evidence for this warming trend is strongly supported by satellite data since the late 1970s from the cryosphere, atmosphere, oceans, and land that confirms increasing temperature trends and their consequences (e.g., reduced Arctic sea ice, rising sea level, ice sheet mass loss, etc.). At the same time, satellite observations of the Sun show remarkably stable solar cycles since the late 1970s, when direct observations of the Sun's total solar irradiance began. Numerical simulation models, driven in part by assimilated satellite data, suggest that future-warming trends will lead to not only a warmer planet, but also a wetter and drier climate depending upon location in a fashion consistent with large-scale atmospheric processes. Continued global warming poses new opportunities for the emergence and spread of fungal disease, as climate systems change at regional and global scales, and as animal and plant species move into new niches. Our contribution to this proceedings is organized thus: First, we review empirical evidence for a warming Earth. Second, we show the Sun is not responsible for the observed warming. Third, we review numerical simulation modeling results that project these trends into the future, describing the projected abiotic environment of our planet in the next 40 to 50 years. Fourth, we illustrate how Rift Valley fever outbreaks have been linked to climate, enabling a better understanding of the dynamics of these diseases, and how this has led to the development of an operational predictive outbreak model for this disease in Africa. Fifth, We project how this experience may be applicable to predicting outbreaks of fungal pathogens in a warming world. Lastly, we describe an example of changing species ranges due to climate change, resulting from recent warming in the Andes and associated glacier melt that has enabled amphibians to colonize higher elevation lakes, only to be followed shortly by the emergence of fungal disease in the new habitats

Developing global climate anomalies suggest potential disease risks for 2006 – 2007

BACKGROUND: El Niño/Southern Oscillation (ENSO) related climate anomalies have been shown to have an impact on infectious disease outbreaks. The Climate Prediction Center of the National Oceanic and Atmospheric Administration (NOAA/CPC) has recently issued an unscheduled El Niño advisory, indicating that warmer than normal sea surface temperatures across the equatorial eastern Pacific may have pronounced impacts on global tropical precipitation patterns extending into the northern hemisphere particularly over North America. Building evidence of the links between ENSO driven climate anomalies and infectious diseases, particularly those transmitted by insects, can allow us to provide improved long range forecasts of an epidemic or epizootic. We describe developing climate anomalies that suggest potential disease risks using satellite generated data. RESULTS: Sea surface temperatures (SSTs) in the equatorial east Pacific ocean have anomalously increased significantly during July – October 2006 indicating the typical development of El Niño conditions. The persistence of these conditions will lead to extremes in global-scale climate anomalies as has been observed during similar conditions in the past. Positive Outgoing Longwave Radiation (OLR) anomalies, indicative of severe drought conditions, have been observed across all of Indonesia, Malaysia and most of the Philippines, which are usually the first areas to experience ENSO-related impacts. This dryness can be expected to continue, on average, for the remainder of 2006 continuing into the early part of 2007. During the period November 2006 – January 2007 climate forecasts indicate that there is a high probability for above normal rainfall in the central and eastern equatorial Pacific Islands, the Korean Peninsula, the U.S. Gulf Coast and Florida, northern South America and equatorial east Africa. Taking into consideration current observations and climate forecast information, indications are that the following regions are at increased risk for disease outbreaks: Indonesia, Malaysia, Thailand and most of the southeast Asia Islands for increased dengue fever transmission and increased respiratory illness; Coastal Peru, Ecuador, Venezuela, and Colombia for increased risk of malaria; Bangladesh and coastal India for elevated risk of cholera; East Africa for increased risk of a Rift Valley fever outbreak and elevated malaria; southwest USA for increased risk for hantavirus pulmonary syndrome and plague; southern California for increased West Nile virus transmission; and northeast Brazil for increased dengue fever and respiratory illness. CONCLUSION: The current development of El Niño conditions has significant implications for global public health. Extremes in climate events with above normal rainfall and flooding in some regions and extended drought periods in other regions will occur. Forecasting disease is critical for timely and efficient planning of operational control programs. In this paper we describe developing global climate anomalies that suggest potential disease risks that will give decision makers additional tools to make rational judgments concerning implementation of disease prevention and mitigation strategies

The El Niño – La Niña cycle and recent trends in supply and demand of net primary productivity in African drylands

Author Posting. © The Author(s), 2016. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Climatic Change 138 (2016): 111-125, doi:10.1007/s10584-016-1730-1.Inter-annual climatic variability over a large portion of sub-Saharan Africa is under the influence of the El Niño-Southern Oscillation (ENSO). Extreme variability in climate is a threat to rural livelihoods in sub-Saharan Africa, yet the role of ENSO in the balance between supply and demand of net primary productivity (NPP) over this region is unclear. Here, we analyze the impact of ENSO on this balance in a spatially explicit framework using gridded population data from the WorldPop project, satellite-derived data on NPP supply, and statistical data from the United Nations. Our analyses demonstrate that between 2000 and 2013 fluctuations in the supply of NPP associated with moderate ENSO events average ±2.8 g C m-2 yr-1 across sub-Saharan drylands. The greatest sensitivity is in arid Southern Africa where a +1oC change in the Niño-3.4 sea surface temperature index is associated with a mean change in NPP supply of -6.6 g C m-2 yr-1. Concurrently, the population-driven trend in NPP demand averages 3.5 g C m-2 yr-1 over the entire region with densely populated urban areas exhibiting the highest mean demand for NPP. Our findings highlight the importance of accounting for the role ENSO plays in modulating the balance between supply and demand of NPP in sub-Saharan drylands. An important implication of these findings is that increase in NPP demand for socio-economic metabolism must be taken into account within the context of climate-modulated supplyFunding for this project was provided by the Swedish National Space Board (contract no. 100/11 to J.A.). A.M.A. received support from the Royal Physiographic Society in Lund and the Lund University Center for Studies of Carbon Cycle and Climate Interactions (LUCCI). C.C.U. was supported by NSF grant OCE-1203892.2017-07-0