Estimation of Molecular Pairwise Relatedness in Autopolyploid Crops

A suitable pairwise relatedness estimation is key to genetic studies. Several methods are proposed to compute relatedness in autopolyploids based on molecular data. However, unlike diploids, autopolyploids still need further studies considering scenarios with many linked molecular markers with known dosage. In this study, we provide guidelines for plant geneticists and breeders to access trustworthy pairwise relatedness estimates. To this end, we simulated populations considering different ploidy levels, meiotic pairings patterns, number of loci and alleles, and inbreeding levels. Analysis were performed to access the accuracy of distinct methods and to demonstrate the usefulness of molecular marker in practical situations. Overall, our results suggest that at least 100 effective biallelic molecular markers are required to have good pairwise relatedness estimation if methods based on correlation is used. For this number of loci, current methods based on multiallelic markers show lower performance than biallelic ones. To estimate relatedness in cases of inbreeding or close relationships (as parent-offspring, full-sibs, or half-sibs) is more challenging. Methods to estimate pairwise relatedness based on molecular markers, for different ploidy levels or pedigrees were implemented in the AGHmatrix R package

Pressure effects on the magnetic properties of FeCuZr studied by x-ray magnetic circular dichroism: Evidence of weakening of ferromagnetism in FeCuZr alloys

The room temperature changes of the magnetic behavior under pressure of an invar alloy of nominal composition [Fe_(0.5)Cu_(0.5)]_(87)Zr_(13) (at. %) has been studied by K-edge x-ray magnetic circular dichroism (XMCD) and x-ray absorption near edge spectroscopy (XANES). The Curie temperature, as determined from low field magnetization measurements, is (255 ± 15) K. However XMCD shows a non negligible signal above this temperature. In addition, the XMCD signal decreases upon increasing pressure indicating a pressure-induced collapse of the magnetic moment. These results evidence the itinerant character of FeCuZr alloys as well as the occurrence of magnetovolume effects characterized by a strong dependence of the 3d band on the Fe-Fe nearest neighbor distances

Direct measurements of the correlation between reentrant ferromagnetism and lattice expansion in FeCuZr alloys

Amorphous metastable alloy of nominal composition [Fe_(0.5)Cu_(0.5)]_(87)Zr_(13) has been synthesized by high-energy ball milling. The alloy exhibit a ferromagnetic behavior with a Curie Temperature of T_(C)=255 K, as determined from low-field measurements whereas no transition to a paramagnetic state is observed under high- enough applied magnetic fields. The evolution of hysteresis loops with temperature as well as thermoremanence measurements indicate an anomalous magnetic behavior characterized by a spontaneous increase in the magnetization values as well as by a magnetic hardening when the temperature is increased above T_(C). These effects are strongly correlated with a dilation of the Fe-Fe nearest-neighbor distances, as determined from extended x-ray absorption fine structure (EXAFS) studies. EXAFS results indicate an almost negligible thermal expansion at temperatures below T_(C) while normal thermal expansion takes place at higher temperatures. Such expansion seems to promote a reinforcement of the ferromagnetic interactions among Fe-Fe atoms that would account for the observed spontaneous increase in the magnetization as well as for the evolution of the coercive field

An Alternative Scenario on the Origin of Ultra-High Pressure (UHP) and Super-Reduced (SuR) Minerals in Ophiolitic Chromitites: A Case Study from the Mercedita Deposit (Eastern Cuba)

The origin of the assemblage of ultra-high pressure (UHP), super-reduced (SuR) and several crustally derived phases in ophiolitic chromitites is still hotly debated. In this paper, we report, for the first time, this assemblage of phases in ophiolitic chromitites of the Caribbean. We studied the Mercedita chromitite deposit in the eastern Cuban ophiolitic complexes. The mineral phases were characterized using microRaman spectroscopy, energy-dispersive spectroscopy with a scanning electron microscope (SEM-EDS), X-ray microdiffraction and electron microprobe analyses. Mineral concentrates were prepared using hydroseparation techniques. We have identified oriented clinopyroxene lamellae in chromite, oriented rutile lamellae in chromite, moissanite hosted in the altered matrix of the chromitite, graphite-like amorphous carbon, corundum and SiO2 hosted in healed fractures in chromite grains, and native Cu and Fe-Mn alloy recovered in heavy-mineral concentrates obtained by hydroseparation. This assemblage may correspond to UHP-SuR conditions, implying recycling of chromitite in the mantle or formation of the chromite grains at deep mantle depths, followed by emplacement at a shallow level in the mantle. However, the chromitite bodies contain gabbro sills oriented parallel to the elongation of the chromitite lenses, and these show no evidence of HP/UHP metamorphism. Therefore, the identified "exotic" phases may not be indicative of UHP. They formed independently as oriented clinopyroxene lamellae in chromite during cooling (clinopyroxene and rutile), in super-reduced microenvironments during the serpentinization processes, and by transference of subducted crustal material to the mantle wedge via cold plume

Evaluating Genetic Relationships Between Tropical Maize Inbred Lines By Means Of Aflp Profiling.

Diversity among tropical maize inbred lines that compose breeding programs, is not well known. The lack of this information has made the arrangement of heterotic groups to be used for breeding purposes difficult. Methods of molecular analysis have been used as efficient alternatives for evaluating genetic diversity, aiming at heterotic group arrangement and acquisition of new hybrids. In this study, AFLP (amplified fragment length polymorphism) was used to investigate the genetic relationships among 96 tropical maize inbred lines from two different origins. The polymorphism level among the genotypes and the possibility of their allocation in heterotic groups were evaluated. Besides, correlations among genetic diversity and flowering time were analyzed. Nine primer combinations were used to obtain AFLP markers, producing 638 bands, 569 of which were polymorphic. Genetic similarities (GS), determined by Jaccard's similarity coefficient, varied from 0.345 to 0.891, with an average of 0.543. The dendrogram based on the GS and on the UPGMA cluster method did not separate the inbred lines in well-defined groups. Aiming at separating the lines into more accurate groups, Tocher's optimization procedure was carried out, 17 groups being identified. Association between flowering time and germplasm pools was detected. AFLP showed itself to be a robust assay, revealing a great power of detection of genetic variability in the tropical germplasm, and also demonstrated to be very useful for guiding breeding programs.14024-3

Mesopore-modified mordenites as catalysts for catalytic pyrolysis of biomass and cracking of vacuum gasoil processes

[EN] Mesopore-modified mordenite zeolitic materials with different Si/Al ratios have been repared and tested in the biomass pyrolysis and catalytic cracking of vacuum gasoil. Alkaline treatment was carried out to generate mesoporosity. Severity of alkaline treatment was found to be of paramount importance to tune the generated mesoporosity, while it significantly affected the crystallinity of treated mordenites. It was moreover observed that the alkaline treatment selectively extracted Si decreasing the Si/Al ratio of treated samples. Catalytic activity of parent and alkaline treated mordenites was studied in the pyrolysis of biomass. All zeolitic based materials produced less amounts of bio-oil but of better quality (lowering the oxygen content from ∼40% to as much as 21%) as compared to the non-catalytic pyrolysis experiments. On the other hand, it was found that the combination of mesopore formation and high surface area after alkaline treatment of the mordenite with a high Si/Al ratio resulted in the enhancement of its catalytic activity, despite the reduction of its acidity. The increment of the decarboxylation and dehydration reactions, combined with a reduction of carbon deposition on the catalyst, resulted in a remarkable decrease in the oxygen content in the organic fraction and therefore, resulted in a superior quality liquid product. Alkaline treated mordenites were additionally acid treated targeting dealumination and removal of the extra framework debris, thus generating mesopore-modified mordenite samples with stronger acid sites and higher total acidity, as candidate catalysts for catalytic cracking of vacuum gasoil. Desilicated and especially desilicated and dealuminated mordenites exhibited the highest activity and selectivity towards LCO with the best olefinicity in gases and higher bottoms conversion. Therefore, an optimized desilicated dealuminated mordenite additive could be an interesting candidate as a component of the FCC catalyst for a high LCO yield.The financial support of this work by the ACENET COMMON INITIATIVE HECABIO: "HEterogeneous CAtalysis for the Conversion of Solid BIOmass into Renewable Fuels and Chemicals" Project ACE.07.026 is gratefully acknowledged.Stefanidis, S.; Kalogiannis, K.; Iliopoulou, EF.; Lappas, AA.; Martínez Triguero, LJ.; Navarro Ruiz, MT.; Chica, A.... (2013). Mesopore-modified mordenites as catalysts for catalytic pyrolysis of biomass and cracking of vacuum gasoil processes. Green Chemistry. 15(6):1647-1658. doi:10.1039/c3gc40161hS1647165815

High-density mapping to guide ablation of a right bundle branch morphology premature ventricular contraction from the right outflow tract

The Rhythmia ultrahigh-density mapping system with a specific algorithm seems to be helpful in identifying the target area to successfully treat multiple morphologies by catheter ablation in the right ventricular outflow tract RVOT. Interestingly, the acquisition process seemed to be extremely faster than a standard manual point-by-point premature ventricular contraction (PVC) mapping

Comparison of RAPD, RFLP, AFLP and SSR markers for diversity studies in tropical maize inbred lines

In order to compare their relative efficiencies as markers and to find the most suitable marker for maize diversity studies we evaluated 18 inbred tropical maize lines using a number of different loci as markers. The loci used were: 774 amplified fragment length polymorphisms (AFLPs); 262 random amplified polymorphic DNAs (RAPDs); 185 restriction fragment length polymorphisms (RFLPs); and 68 simple sequence repeats (SSR). For estimating genetic distance the AFLP and RFLP markers gave the most correlated results, with a correlation coefficient of r = 0.87. Bootstrap analysis were used to evaluate the number of loci for the markers and the coefficients of variation (CV) revealed a skewed distribution. The dominant markers (AFLP and RAPD) had small CV values indicating a skewed distribution while the codominant markers gave high CV values. The use of maximum values of genetic distance CVs within each sample size was efficient in determining the number of loci needed to obtain a maximum CV of 10%. The number of RFLP and AFLP loci used was enough to give CV values of below 5%, while the SSRs and RAPD loci gave higher CV values. Except for the RAPD markers, all the markers correlated genetic distance with single cross performance and heterosis which showed that they could be useful in predicting single cross performance and heterosis in intrapopulation crosses for broad-based populations. Our results indicate that AFLP seemed to be the best-suited molecular assay for fingerprinting and assessing genetic relationships among tropical maize inbred lines with high accuracy.579588Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq

Post-Inflationary Reheating

We study a model for reheating that has been much investigated for parametric resonance, having a quartic interaction of the scalar inflaton with another scalar field. Attention is particularly on the quantum excitations of the inflaton field and the metric perturbation with a smooth transition from quantum to classical stochastic states, followed through from a specific inflation model to a state including a relativistic fluid. The scalar fields enter non-perturbatively but the metric enters perturbatively, and the validity of this latter is assessed. In this model our work seems to point the large scale curvature parameter changing.Comment: 25 pages, 6 figures. Coding error(misprint) corrected:figures and some conclusions change

Particle production from nonlocal gravitational effective action

In this paper we show how the nonlocal effective action for gravity, obtained after integrating out the matter fields, can be used to compute particle production and spectra for different space-time metrics. Applying this technique to several examples, we find that the perturbative calculation of the effective action up to second order in curvatures yields exactly the same results for the total number of particles as the Bogolyubov transformations method, in the case of masless scalar fields propagating in a Robertson-Walker space-time. Using an adiabatic approximation we also obtain the corresponding spectra and compare the results with the traditional WKB approximation.Comment: 22 pages, LaTeX, no figures. Corrected version with new comments and results. To appear in Phys. Rev.