Abundance-occupancy relationships in North Sea copepods: ventures into time and space.

Abundance-occupancy relationships (AORs), namely the generally positive relationship between species’ mean local abundance and regional distribution represent the most ubiquitous macroecological pattern found in nature. Their importance lies in that they link local population processes to larger scale population structure. However, they exhibit much variability in shape and form and attempts to untangle the variety of processes proposed to underlie them indicates that interpretation of AORs is highly context specific and dependent on the temporal and spatial scales of both data and analyses. The overarching theme of this thesis was to examine the cross-scale temporal behaviour of AORs, by using long-term copepod time-series and varying the extents and resolutions of analyses through space and time. To increase the spatial resolution of the data, I used a species distribution modeling approach to interpolation, incorporating satellite data, including measures of hydrographic structure, an important driver of plankton spatial distributions. The resulting high-resolution maps of copepod abundance distribution are an important output with wide ranging application. I found significant heterogeneities in the relationship on decadal, inter-annual and seasonal scales, with higher-level dynamics often masking highly contrasting dynamics at lower levels. Patterns of temporal heterogeneity varied interspecifically and, consistent with theory, appear to be linked to life-history characteristics related to colonization ability. Identifying time periods or scales most relevant to species’ population dynamics allowed a better understanding of how life-history traits interact with various scales of environmental variability to generate interspecific differences in AORs. Identification of heterogeneities is thus an important step in linking macroecological pattern to process and leads to an appreciation of the hierarchical nature of the relationship. I also demonstrated that AORs provide an excellent framework for examining the response of species’ regional population dynamics to environmental change

data

The folder contains the files required for exercise 1: tidy dat

Sex roles in birds

This app is a demo of a private application, developed to navigate a large compiled dataset of over 200 avian biological traits. It's designed to enable quick access to visual representations and summaries of data, supporting exploratory data analysis and quality control, eg through easy identification of outliers, expected ranges, distributions of data etc. The cross-variable tab enables visualisation of relationships between traits while the download tab allows subsetting and extraction of data. Interactivity was integrated into the visualisations to allow users full control of aspects of interest while determination of correct plot types and application of widget features (eg logging or bin selection) is automated according to trait metadata

Introduction to version control with RStudio

Introduction to version control with RStudi

Regulation of the effects of nutrient loading on harmful algal bloom dynamics by physical processes.

Slides from group presentation given as part of 3rd year coursework for a degree in BSc Marine Biology and Oceanography, Plymouth University, Dec 2008.<div><br></div><div>Using examples from US Estuaries with differing hydrodynamic regimes, the talk explored how physical processes modulate the relationship between nutrient loading and HAB dynamics.</div

ropensci/codemetar: codemetar: Generate CodeMeta Metadata for R Packages

an R package for generating and working with codemet

ropensci/rdhs v0.6.3

&lt;ul&gt; &lt;li&gt;Addresses CRAN fail on windows &lt;/li&gt; &lt;li&gt;New &lt;code&gt;delabel_df&lt;/code&gt; for converting labelled data frames to characters (#54)&lt;/li&gt; &lt;/ul&gt