Evolutionary stability of antigenically escaping viruses

Antigenic variation is the main immune escape mechanism for RNA viruses like influenza or SARS-CoV-2. While high mutation rates promote antigenic escape, they also induce large mutational loads and reduced fitness. It remains unclear how this cost-benefit trade-off selects the mutation rate of viruses. Using a traveling wave model for the co-evolution of viruses and host immune systems in a finite population, we investigate how immunity affects the evolution of the mutation rate and other non-antigenic traits, such as virulence. We first show that the nature of the wave depends on how cross-reactive immune systems are, reconciling previous approaches. The immune-virus system behaves like a Fisher wave at low cross-reactivities, and like a fitness wave at high cross-reactivities. These regimes predict different outcomes for the evolution of non-antigenic traits. At low cross-reactivities, the evolutionarily stable strategy is to maximize the speed of the wave, implying a higher mutation rate and increased virulence. At large cross-reactivities, where our estimates place H3N2 influenza, the stable strategy is to increase the basic reproductive number, keeping the mutation rate to a minimum and virulence low

Study of the interface Pt(111)/ [Emmim][NTf2] using laser-induced temperature jump experiments

The interface between a Pt(111) electrode and a room temperature ionic liquid, 1-ethyl-2,3-dimethylimidazolium bis(trifluoromethylsulfonyl)imide, was investigated with the laser-induced temperature jump method. In this technique, the temperature of the interface is suddenly increased by applying short laser pulses. The change of the electrode potential caused by the thermal perturbation is measured under coulostatic conditions during the subsequent temperature relaxation. This change is mainly related to the reorganization of the solvent components near the electrode surface. The sign of the potential transient depends on the potential of the experiment. At high potential values, positive transients indicate a higher density of anions than cations close the surface, contributing negatively to the potential of the electrode. Decreasing the applied potential to sufficiently low values, the transient becomes negative, meaning that the density of cations becomes then higher at the surface of the electrode. The potential dependence of the interfacial response shows a marked hysteresis depending on the direction in which the applied potential is changed.Support from MINECO (Spain) through project CTQ2013-44083-P is greatly acknowledged. Paula Sebastian acknowledges to the Generalitat valenciana for the award of vali + d gran

Interaction of water with methanesulfonic acid on Pt single crystal electrodes

The electrochemical behavior of methanesulfonic acid on platinum single crystal electrode surfaces is investigated by cyclic voltammetry and infrared spectroscopy measurements. The results are compared with the voltammetric profiles of perchloric and trifluoromethanesulfonic acids. The differences are interpreted in terms of the effect of the anion on the structure of water. No adsorbed species are detected by infrared spectroscopy.APS acknowledges the scholarship “Estudiantes sobresalientes de posgrado” at the UNC and COLCIENCIAS National Doctoral Scholarship (567). MFS acknowledges the support of UNC (Research Project 19030). JMFwould like to thankGeneralitat Valenciana (Feder) through project PROMETEOII/2014/013

Contamination of CT scanner surfaces with SARS-CoV-2 and infective potential after examination of invasively ventilated, non-invasively ventilated and non-ventilated patients with positive throat swabs: prospective investigation using real-time reverse-transcription PCR and viral cell culture

Background: During the current severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) pandemic, computed tomography (CT) has become widely used in patients with suspected or known coronavirus disease 2019 (COVID-19). This prospective observational study in 28 invasively ventilated and 18 non-invasively ventilated patients with confirmed SARS-CoV-2 contamination aims at investigating SARS-CoV-2 contamination of CT scanner surfaces and its infectiousness. Methods: Swab sampling of the CT table and gantry before and after CT examinations was performed. Additionally, the CT ventilation system air grid was wiped off after each examination. Real-time reverse-transcription polymerase chain reaction (RT-PCR) for SARS-CoV-2 RNA (ribonucleic acid) and viral cell culture were performed in the virology core lab. Results: After examination of non-invasively ventilated or non-ventilated patients, SARS-CoV-2 RNA was found in 11.1% (4/36) on patient near surfaces (CT table and gantry) and in 16.7% (3/18) on the CT air grid respectively after examination of invasively ventilated patients in 5.4% (3/56) on CT table and gantry and 7.1% (2/28) on the CT air grid. Surface contamination was more common in non-invasively ventilated or non-ventilated patients with a high viral load who were actively coughing. RT-PCR cycle threshold (Ct) was high (35.96-39.31) in all positive samples and no positive viral cell culture was found. Conclusion: Our study suggests that CT scanner surface contamination with SARS-CoV-2 is considerable and more common after examination of non-invasively ventilated or non-ventilated patients compared to invasively ventilated patients. However, no viral cell culture positivity was found, hence the infectious potential seems low

Notas sobre las algas marinas de la Reserva Internacional de la Biosfera Seaflower, Caribe Colombiano IX: nuevos registros de Lobophora declerckii, Taonia abbottiana y Verosphacela ebrachia para Colombia

Background and Aims: During the Seaflower Scientific Expedition in 2019, extensive seaweed collection was carried out around Old Providence and Santa Catalina islands. Despite the intensive phycological studies realized during the past decade, new reports of macroalgae are still recorded for the Seaflower Biosphere Reserve. The objective of this work is to present three new records of brown algae for Colombia.Methods: The algal sampling was carried out in September 2019 during the Seaflower Scientific Expedition. The samples were collected around the Providencia and Santa Catalina islands in coral patches ecosystems, by SCUBA diving at depths between 3 and 16 m. The algae collected were preserved in a 4% formalin/seawater solution. The identification was carried out using optical and stereoscopic microscopes. All specimens were deposited in the herbarium JIW of the Biology Department of the Universidad Nacional de Colombia, Bogotá, Colombia. Key results: Three species of brown algae are newly reported for Colombia: Lobophora declerckii, Taonia abbottiana and Verosphacela ebrachia. Verosphacela has been reported, to date, only from the type locality in Florida and from Isla Mujeres, in Mexico. Due to its cryptic and small habit, it may be much more common than actually reported. Lobophora declerckii is apparently the most common species of Lobophora in the Archipelago. Taonia abbottiana may be much more common than reported to date, but it is easily confused with Stypopodium zonale. Conclusions: Despite the intense phycological research carried out in the past decade in the Archipelago of San Andrés, Old Providence and Santa Catalina, there is still much to be discovered.Antecedentes y Objetivos: Durante la Expedición Científica Seaflower realizada en 2019, se hizo una extensa recolecta de macroalgas alrededor de las islas de Providencia y Santa Catalina. No obstante el intenso trabajo ficológico de la última década, se siguen encontrando nuevos registros de macroalgas para la Reserva de la Biosfera Seaflower. El objetivo del presente trabajo es presentar tres nuevos registros de algas pardas para Colombia.Metodos: El muestreo de algas se realizó en septiembre de 2019 durante la Expedición Científica Seaflower. Las muestras fueron recolectadas alrededor de las islas Providencia y Santa Catalina en ecosistemas de parches de coral, por medio de buceo SCUBA a profundidades entre 3 y 16 m. Las algas recolectadas se conservaron en una solución de formalina/agua de mar al 4%. La identificación se realizó mediante microscopios óptico y estereoscopio. Todos los especímenes fueron depositados en el herbario JIW del Departamento de Biología de la Universidad Nacional de Colombia, en Bogotá, Colombia. Resultados clave: Tres especies de algas pardas son reportadas por primera vez para Colombia: Lobophora declerckii, Taonia abbottiana y Verosphacela ebrachia. Verosphacela ha sido reportada, hasta la fecha, solamente en la localidad tipo en Florida y en Isla Mujeres, en México. Debido a su hábito pequeño y críptico, puede ser mucho más común de lo actualmente reportado. Lobophora declerckii parece ser la especie más común de Lobophora en el Archipiélago. Taonia abbottiana puede ser mucho más común de lo reportado actualmente, pero es fácilmente confundida con Stypopodium zonale. Conclusión: No obstante la intensa investigación ficológica llevada a cabo en la última década en el Archipiélago de San Andrés, Providencia y Santa Catalina, hay todavía mucho por descubrir

Cu(111) single crystal electrodes: Modifying interfacial properties to tailor electrocatalysis

Tailoring electrocatalyst materials to the specific requirements of a certain reaction and to optimize activity or enhance selectivity is a key tactic for the development of low-temperature fuel and electrolyzer cells for clean energy production. Here, we demonstrate the modification of Cu(111) electrodes with different sub-monolayer coverages of foreign metals (Cd) and metal hydroxides (Co(OH)2 and Ni(OH)2) for application in the hydrogen evolution reaction (HER) in alkaline media. In situ electrochemical scanning tunneling microscopy (EC-STM) reveals that these modifications have a significant influence on the morphology and structure of the Cu(111) surface with its characteristics depending on both the nature and the amount of the adsorbed metal(hydroxide). Ni(OH)2 and Co(OH)2 on Cu(111) lead to a significant enhancement of the electrocatalytic activity towards the HER in alkaline electrolyte, whereas a decrease in activity is found for Cd modified Cu(111). These trends can be rationalized by considering the strength of the interfacial electric field and its influence on the specific interactions of the electrode with the water ad-layer close to the surface, as determined by laser-induced temperature jump measurements. This comparative study therefore provides valuable information on the structure-activity relation as well as insights on the interfacial characteristics of different bimetallic Cu electrocatalysts.A.A. is a recipient of a doctorate (DOC) Fellowship of the Austrian Academy of Sciences at the Institute of Physical Chemistry. C.G. thanks the Austrian Research Promotion Agency (FFG) for funding by the project number 870523. J.K-L. acknowledges funding by the Austrian Science Fund (FWF) via grant I-4114-N37. J.M.F and V.C. acknowledge financial support from Ministerio de Ciencia e Innovación (project PID2019-105653GB-100) and Generalitat Valenciana (project PROMETEO/2020/063)

Role of the interfacial water structure on electrocatalysis: Oxygen reduction on Pt(1 1 1) in methanesulfonic acid

Most of electrocatalytic reactions occur in an aqueous environment. Understanding the influence of water structure on reaction dynamics is fundamental in electrocatalysis. In this work, the role of liquid water structure on the oxygen reduction at Pt(1 1 1) electrode is analyzed in methanesulfonic (MTSA) and perchloric acids. This is because these different anions can exert a different influence on liquid water structure. Results reveal a lower ORR electrode activity in MTSA than in HClO4 solutions and they are discussed in light of anion's influence on water structural ordering. From them, the existence of an outer-sphere, rate determining, step in the ORR mechanism is suggested.This work has been carried out under MINECO project CTQ2013-44083-P (Spain). APSR acknowledges the scholarship “Estudiantes sobresalientes de posgrado” at the UNAL and COLCIENCIAS National Doctoral Scholarship (567). MFS acknowledges the support of UNAL (Research Project 19030)

Interfacial Water Structure as a Descriptor for Its Electro-Reduction on Ni(OH)2-Modified Cu(111)

The hydrogen evolution reaction (HER) has been crucial for the development of fundamental knowledge on electrocatalysis and electrochemistry, in general. In alkaline media, many key questions concerning pH-dependent structure–activity relations and the underlying activity descriptors remain unclear. While the presence of Ni(OH)2 deposited on Pt(111) has been shown to highly improve the rate of the HER through the electrode’s bifunctionality, no studies exist on how low coverages of Ni(OH)2 influence the electrocatalytic behavior of Cu surfaces, which is a low-cost alternative to Pt. Here, we demonstrate that Cu(111) modified with 0.1 and 0.2 monolayers (ML) of Ni(OH)2 exhibits an unusual non-linear activity trend with increasing coverage. By combining in situ structural investigations with studies on the interfacial water orientation using electrochemical scanning tunneling microscopy and laser-induced temperature jump experiments, we find a correlation between a particular threshold of surface roughness and the decrease in the ordering of the water network at the interface. The highly disordered water ad-layer close to the onset of the HER, which is only present for 0.2 ML of Ni(OH)2, facilitates the reorganization of the interfacial water molecules to accommodate for charge transfer, thus enhancing the rate of the reaction. These findings strongly suggest a general validity of the interfacial water reorganization as an activity descriptor for the HER in alkaline media.A.A. is a recipient of a doctorate (DOC) Fellowship of the Austrian Academy of Sciences at the Institute of Physical Chemistry. C.G. thanks the Austrian Research Promotion Agency (FFG) for funding via the project number 870523. J.K.-L. acknowledges funding by the Austrian Science Fund (FWF) via grant I-4114-N37. J.M.F. and V.C. acknowledge financial support from Ministerio de Ciencia e Innovación (project PID2019-105653GB-100) and Generalitat Valenciana (project PROMETEO/2020/063)

Effects of multi-walled carbon nanotube materials on Ruditapes philippinarum under climate changes: the case of salinity shifts

The toxicity of carbon nanotubes (CNTs) is closely related to their physico-chemical characteristics as well as the physico-chemical parameters of the media where CNTs are dispersed. In a climate change scenario, changes in seawater salinity are becoming a topic of concern particularly in estuarine and coastal areas. Nevertheless, to our knowledge no information is available on how salinity shifts may alter the sensitivity (in terms of biochemical responses) of bivalves when exposed to different CNTs. For this reason, a laboratory experiment was performed exposing the Manila clam Ruditapes philippinarum, one of the most dominant bivalves of the estuarine and coastal lagoon environments, for 28 days to unfunctionalized multi-walled carbon nanotube MWCNTs (Nf-MWCNTs) and carboxylated MWCNTs (f-MWCNTs), maintained at control salinity (28) and low salinity 21. Concentration-dependent toxicity was demonstrated in individuals exposed to both MWCNT materials and under both salinities, generating alterations of energy reserves and metabolism, oxidative status and neurotoxicity compared to non-contaminated clams. Moreover, our results showed greater toxic impacts induced in clams exposed to f-MWCNTs compared to Nf-MWCNTs. In the present study it was also demonstrated how salinity shifts altered the toxicity of both MWCNT materials as well as the sensitivity of R. philippinarum exposed to these contaminates in terms of clam metabolism, oxidative status and neurotoxicity.publishe

The influence of Climate Change on the fate and behavior of different carbon nanotubes materials and implication to estuarine invertebrates

The widespread use of Carbon nanotubes (CNTs) has been increasing exponentially, leading to a significant potential release into the environment. Nevertheless, the toxic effects of CNTs in natural aquatic systems are related to their ability to interact with abiotic compounds. Considering that salinity variations are one of the main challenges in the environment and thus may influence the behavior and toxicity of CNTs, a laboratory experiment was performed exposing the tube-building polychaete Diopatra neapolitana (Delle Chiaje 1841) for 28 days to pristine multi-walled carbon nanotube (MWCNTs) and carboxylated MWCNTs, maintained at control salinity 28 and low salinity 21. An innovative approach based on thermogravimetric analysis (TGA) was adopted for the first time to assess the presence of MWCNTs aggregates in the organisms. Both CNTs generated toxic impacts in terms of regenerative capacity, energy reserves and metabolic capacity as well as oxidative and neuro status, however greater toxic impacts were observed in polychaetes exposed to carboxylated MWCNTs. Moreover, both CNTs maintained under control salinity (28) generated higher toxic impacts in the polychaetes compared to individuals maintained under low salinity (21), indicating that exposed polychaetes tend to be more sensitive to the alteration induced by salinity variations on the chemical behavior of both MWCNTs in comparison to salt stress.publishe