Chromosome Painting in Neotropical Long- and Short-Tailed Parrots (Aves, Psittaciformes): Phylogeny and Proposal for a Putative Ancestral Karyotype for Tribe Arini.

: Most Neotropical Psittacidae have a diploid number of 2n = 70, and a dichotomy in chromosome patterns. Long-tailed species have biarmed macrochromosomes, while short-tailed species have telo/acrocentric macrochromosomes. However, the use of chromosome painting has demonstrated that karyotype evolution in Psittacidae includes a high number of inter/intrachromosomal rearrangements. To determine the phylogeny of long- and short-tailed species, and to propose a putative ancestral karyotype for this group, we constructed homology maps of Pyrrhura frontalis (PFR) and Amazona aestiva (AAE), belonging to the long- and short-tailed groups, respectively. Chromosomes were analyzed by conventional staining and fluorescent in situ hybridization using whole chromosome paints of Gallus gallus and Leucopternis albicollis. Conventional staining showed a karyotype with 2n = 70 in both species, with biarmed macrochromosomes in PFR and telo/acrocentric chromosomes in AAE. Comparison of the results with the putative avian ancestral karyotype (PAK) showed fusions in PFR of PAK1p/PAK4q (PFR1) and PAK6/PAK7 (PFR6) with a paracentric inversion in PFR6. However, in AAE, there was only the fusion between PAK6/7 (AAE7) with a paracentric inversion. Our results indicate that PFR retained a more basal karyotype than long-tailed species previously studied, and AAE a more basal karyotype for Neotropical Psittacidae analyzed so far

The molecular cytogenetic characterization of Conopophaga lineata indicates a common chromosome rearrangement in the Parvorder Furnariida (Aves, Passeriformes).

Cytogenetic analyses of the Suboscines species are still scarce, and so far, there is no karyotype description of any species belonging to the family Conopophagidae. Thus, the aim of this study is to describe and analyze the karyotype of Conopophaga lineata by chromosome painting using Gallus gallus (GGA) probes and to identify the location of the 18/28S rDNA cluster. Metaphases were obtained from fibroblast culture from two individuals of C. lineata. We observed a diploid number of 2n=78. GGA probes showed that most ancestral syntenies are conserved, except for the fission of GGA1 and GGA2, into two distinct pairs each. We identified the location of 18S rDNA genes in a pair of microchromosomes. The fission of the syntenic group corresponding to GGA2 was observed in other Furnariida, and hence may correspond to a chromosomal synapomorphy for the species of Parvorder Furnariida

Highly Conserved Microchromosomal Organization in Passeriformes Birds Revealed via BAC-FISH Analysis

Passeriformes birds are widely recognized for their remarkable diversity, with over 5700 species described so far. Like most bird species, they possess a karyotype characteristic of modern birds, which includes a bimodal karyotype consisting of a few pairs of macrochromosomes and many pairs of microchromosomes. Although the karyotype is typically 2n = 80, the diploid number can atypically vary greatly, ranging from 56 to approximately 100 chromosomes. In this study, we aimed to understand the extent of conservation of the karyotype’s organizational structure within four species of this group using Bacterial Artificial Chromosomes via Fluorescence In Situ Hybridization (BAC-FISH) with microchromosome probes from Chicken (Gallus gallus) or Zebra Finch (Taeniopygia guttata) per microchromosomes (GGA10-28, except GGA16). By examining the chromosome complement of four passerine species—the Streaked Flycatcher (Myiodynastes maculatus), Shiny Cowbird (Molothrus bonariensis), Southern House Wren (Troglodytes aedon), and Double-collared Seedeater (Sporophila caerulescens)—we discovered a new chromosome number for Southern House Wren. Through FISH experiments, we were able to observe the same pattern of microchromosome organization as in the common ancestor of birds. As a result, we propose a new diploid number for Southern House Wren and confirm the conservation status of microchromosome organization, which may confer evolutionary advantages to this group

Chromosomal evolution and phylogenetic considerations in cuckoos (Aves, Cuculiformes, Cuculidae).

The Cuckoos have a long history of difficult classification. The species of this order have been the subject of several studies based on osteology, behavior, ecology, morphology and molecular data. Despite this, the relationship between Cuculiformes and species of other orders remains controversial. In this work, two species of Cuculidae, Guira guira (Gmelin, 1788) and Piaya cayana (Linnaeus, 1766), were analyzed by means of comparative chromosome painting in order to study the chromosome evolution of this group and to undertake the first chromosome mapping of these species. Our results demonstrate high chromosomal diversity, with 2n = 76 in G. guira, with fission and fusion events involving ancestral syntenies, while P. cayana presented only fissions, which were responsible for the high diploid number of 2n = 90. Interestingly, there were no chromosomal rearrangements in common between these species. Our results, based on Giemsa staining, were compared with previous data for other cuckoos and also with taxa proposed as sister-groups of Cuculiformes (Otidiformes, Musophagiformes and Opisthocomiformes). Cytogenetic comparisons demonstrated that cuckoo species can be divided into at least three major groups. In addition, we found no evidence to place Cuculiformes close to the groups proposed previously as sister-groups

Identificação citogenética de quatro gerações de búfalos mestiços mantidos em um programa de conservação na ilha de Marajó/Brazil

The domestic buffaloes were divided in two groups: the river buffalo, which has chromosome number 2n=50 and the swamp buffalo, 2n=48. The crosses between these animals result in F1 specimens with 2n=49 which are viable and fertile. In Brazil the Baio type and the Carabao breed buffalo are found in small number and maintained in genetic conservation programs that aim to keep these groups separated, this way conserving their genetic heritage in situ as well as ex situ. The objective of this study was to evaluate cytogenetically buffaloes from Carabao breed, Baio type and its F1, F2, F3 and F4 crossbreeds kept in a genetic conservation program. The metaphases were obtained from blood culture of 50 animals Carabao breed, 45 Baio type and 10 animals belonging to the crossbreed progeny. The Baio type presented 2n=50 and the Carabao breed 2n=48. In the progeny were observed specimens with chromosome number 2n=48 or 2n=49 with morphological variations in the first pair of chromosomes. The diploid number 2n=49 confirms crossbreeding of the animals from the conservation program. Thus, the exclusion of these animals from the original herds is highly recommended in order to keep separate genotypes for each genetic group.Os búfalos domésticos são divididos em dois grupos: os búfalos de rio, com número diploide 2n= 50 e os búfalos de pântano, 2n= 48. O cruzamento F1 entre estes resultam em animais com 2n= 49, que são viáveis e férteis. No Brasil os búfalos do tipo Baio e da raça Carabao são mantidos em um programa de conservação genética que visa manter esses grupos separados, conservando seu patrimônio genético in situ e ex situ. O objetivo deste estudo foi avaliar citogeneticamente búfalos da raça Carabao, tipo Baio e suas crusas F1, F2, F3 e F4 mantidos em um programa de conservação genética. As metáfases foram obtidas a partir de cultura de linfócitos de 50 animais da raça Carabao, 45 do tipo Baio e 10 descendentes de uma fêmea mestiça. Os animais do tipo Baio apresentaram 2n= 50, os da raça Carabao 2n= 48. Para os descendentes foram observados 2n= 48 e 2n= 49, com variações morfológicas no primeiro par. O número diplóides 2n= 49 confirma a presença de animais cruzados no programa de conservação. Assim, a exclusão destes animais e seus descendentes é altamente recomendada dos rebanhos originais a fim de manter os genótipos separados para cada grupo genético

Bayesian multivariate approach for growth, fertility and visual score traits of Brangus cattle herds

O objetivo deste trabalho foi estimar parâmetros genéticos e tendências genéticas e fenotípicas de uma população da raça Brangus. As características peso, circunferência escrotal e escores visuais de conformação, precocidade, musculatura e umbigo, padronizadas para 550 dias de idade, foram avaliadas a partir de 6.789 registros de animais nascidos de 288 touros e 5.949 vacas, entre 1991 e 2001, em 49 fazendas localizadas nas regiões Centro‑Oeste, Sudeste e Sul do Brasil. Para a estimação dos parâmetros, das correlações e das tendências genéticas, foi adotado o modelo animal linear‑limiar hexacaracterística. As estimativas de herdabilidade direta foram de 0,39 e 0,27, para peso e circunferência escrotal, respectivamente, e de 0,22, 0,20, 0,23 e 0,33 para conformação, precocidade, musculatura e umbigo, o que indica considerável variação genética aditiva e que é possível obter ganho genético por meio da seleção. As correlações genéticas entre peso e circunferência escrotal com os escores de conformação, precocidade e musculatura mostram a possibilidade de resposta correlacionada. As tendências genéticas estimadas indicam grande contribuição de fontes de variação não genéticas para todas as características no período estudado, e apontam a necessidade de melhoria das condições ambientais, para que os animais expressem todo seu potencial genético.The objective of this work was to estimate genetic parameters, and genetic and phenotypic trends of a Brangus breed population. Weight, scrotal circumference, and visual scores of conformation, precocity, musculature, and navel, adjusted to 550 days of age, were evaluated from records of 6,789 animals sired by 288 bulls and 5,949 dams, born between 1991 and 2001 in 49 farms located in the Center‑West, Southeast, and South regions of Brazil. To estimate parameters, correlations, and genetic trends, a six‑trait, linear‑threshold animal model was adopted. Direct heritability estimates were 0.39 and 0.27 for weight and scrotal circumference, respectively, and 0.22, 0.20, 0.23, and 0.33 for conformation, precocity, musculature, and navel, indicating considerable additive genetic variation, and that it is possible to obtain genetic gain by selection. Genetic correlations between weight and scrotal circumference with the scores of conformation, precocity, and musculature show the possibility of correlated responses. Genetic trends indicate great contribution of non‑genetic sources of variation in the evaluated traits, which leads to the necessity of improving environmental conditions, in order for the animals to fully express their genetic potential

Chromosomal Evolution in the Phylogenetic Context: A Remarkable Karyotype Reorganization in Neotropical Parrot Myiopsitta monachus (Psittacidae).

Myiopsitta monachus is a small Neotropical parrot (Psittaciformes: Arini Tribe) from subtropical and temperate regions of South America. It has a diploid chromosome number 2n = 48, different from other members of the Arini Tribe that have usually 70 chromosomes. The species has the lowest 2n within the Arini Tribe. In this study, we combined comparative chromosome painting with probes generated from chromosomes of Gallus gallus and Leucopternis albicollis, and FISH with bacterial artificial chromosomes (BACs) selected from the genome library of G. gallus with the aim to shed light on the dynamics of genome reorganization in M. monachus in the phylogenetic context. The homology maps showed a great number of fissions in macrochromosomes, and many fusions between microchromosomes and fragments of macrochromosomes. Our phylogenetic analysis by Maximum Parsimony agree with molecular data, placing M. monachus in a basal position within the Arini Tribe, together with Amazona aestiva (short tailed species). In M. monachus many chromosome rearrangements were found to represent autopomorphic characters, indicating that after this species split as an independent branch, an intensive karyotype reorganization took place. In addition, our results show that M. monachus probes generated by flow cytometry provide novel cytogenetic tools for the detection of avian chromosome rearrangements, since this species presents breakpoints that have not been described in other species