41 research outputs found

    Comprehensive Analysis of Disease Related Nuclear and Mitochondrial Genes in Hepatocellular Carcinoma

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    Hepatocellular carcinoma (HCC) is the third most lethal cancer due to late detection, high recurrence and limited therapeutics. Although genetic alterations have been recently studied by whole genome or whole exome next generation sequencing, a comprehensive analysis of HCC relevant genes on lesions with low and high grade of dedifferentiation is missing. Herein, I aimed to study the nuclear and mitochondrial genomic alterations in order to characterize HCC development and clonality. First, for target enrichment of HCC relevant genes and mt-genome, gene loci of relevance had to be selected and primer sets designed. Subsequent ultra-deep sequencing revealed that in accordance with previous studies, the β-catenin gene (CTNNB1) was shown to be the most frequently mutated oncogene, whereas the TP53 and AXIN1 genes were the most frequently mutated tumour suppressor genes. Interestingly, CTNNB1 mutations were detected in lesions with early as well as advanced HCC stage, confirming its role in hepatocarcinogenesis. In contrast, TP53 mutations were only detected in nodules with advanced HCC stage. In addition, non- protein damaging mutations in the AXIN1 gene were detected in higher frequency in non-tumour than in tumour lesions; indicating the loss of heterozygosity (LOH) in some tumour samples. Since AXIN1 alterations effect as well as β-catenin mutations the WNT signalling, my study supports new therapeutical strategies targeting components of the WNT pathway. Furthermore, this study addressed the intra-tumour clonal structure by ultra-deep sequencing of the entire mitochondrial (mt) genome for better understanding how HCC originate, develop and progress. Since, the mt-genome is highly susceptible to DNA alterations due to the lack of protective histones and a limited DNA repair system, the mutations of the mtDNA are ideal targets to be used for follow up of tumour progression and analysis of tumour clonality. Therefore, I established a NGS approach for a rapid and sensitive mutation screening analysis of the entire mt- genome as a novel tool for tumour cell tracking. Beside a high mt-mutation rate in tumour areas, also frequent mt-mutations were observed in peri-tumour area suggesting that mt-genome is susceptible at earliest stage of hepatocarcinogenesis. Furthermore, most HCC nodules of individual sample have identical mt-mutations, indicates the monoclonal HCC origin. Interestingly, the increasing numbers and frequency of a particular mt-hotspot mutation refer to the progression of the HCC dedifferentiation. In summary, I established a fast pipeline of mutation analysis for simultaneous testing of a tumour specific, hotspot gene panel covering diagnostic relevant loci of HCC, and could assist in the selection of currently available treatments likely to be most effective for HCC patients. Notably, effective targeting of the Wnt signalling pathway is considered as a potential target for pharmacological therapy that is eagerly awaited. Additionally, our mt-genome screening based approach representing rapid and sensitive molecular tool and provide novel insights in cancer diagnostics and therapeutic strategies

    Robust Expression of Tumor Suppressor miRNA\u27s Let-7 and miR-195 Detected in Plasma of Saudi Female Breast Cancer Patients.

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    Background Female breast cancer is frequently diagnosed at a later stage and the leading cause of cancer deaths world-wide. Levels of cell-free circulating microRNAs (miRNAs) can potentially be used as biomarkers to measure disease progression in breast cancer patients in a non-invasive way and are therefore of high clinical value. Methods Using quantitative RT-PCR, circulating miRNAs were measured in blood samples collected from disease-free individuals (n = 34), triple-negative breast tumours (TNBC) (n = 36) and luminal tumours (n = 57). In addition to intergroup comparisons, plasma miRNA expression levels of all groups were analyzed against RNASeq data from cancerous breast tissue via The Cancer Genome Atlas (TCGA). Results A differential set of 18 miRNAs were identified in the plasma of breast cancer patients and 10 miRNAs were uniquely identified based on ROC analysis. The most striking findings revealed elevated tumor suppressor let-7 miRNA in luminal breast cancer patients, irrespective of subtype, and elevated miR-195 in plasma of TNBC breast cancer patients. In contrast, hsa-miR-195 and let-7 miRNAs were absent from cancerous TCGA tissue and strongly expressed in surrounding non-tumor tissue indicating that cancerous cells may selectively export tumor suppressor hsa-miR-195 and let-7 miRNAs in order to maintain oncogenesis. Conclusions While studies have indicated that the restoration of let-7 and miR-195 may be a potential therapy for cancer, these results suggested that tumor cells may selectively export hsa-miR-195 and let-7 miRNAs thereby neutralizing their potential therapeutic effect. However, in order to facilitate earlier detection of breast cancer, blood based screening of hsa-miR-195 and let-7 may be beneficial in a female patient cohort

    Pharmacoeconomic Evaluations of Oral Anticancer Agents. Thematic Systematic Review

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    Background: Around 14.1 million new cancer cases and 8.2 million deaths caused by cancer were reported in 2012, expected to rise up to 22 million within the next 2 decades. The parenteral route (intravenous dosage form) has been the most common administration route for chemotherapeutic agents, which is associated with the need for hospitalization and a range of significant adverse drug reaction. A new generation of chemotherapies that is orally administered has been introduced to practices as a superior and more efficient therapeutic alternative. Oral anticancer drugs (OACDs) have shown to be eliminating the need for hospitalization, decreasing the rate of adverse drug reactions and, ultimately, improving patients' quality of life. Economically, this translates into reduction in inpatient hospitalization costs, including several of the associated costs, such as the cost of treating side effects. A disadvantage of OACDs however, is the increased acquisition costs as compared to those for the intravenously administered alternatives. This resulted into resistance to include OACDs by several international insurance schemes and drug formulary practices, including in Qatar. Objectives: The current project sought to analyze the medical literature in relation to published economic evaluations (pharmacoeconomics) of OACDs, especially as compared to the parenteral alternatives. This will identify the decision analytic modeling conducted as well as the variety of methods used. Strengths and weaknesses of study designs will be determined, including gaps in knowledge. Methodology: A thematic systematic review was conducted using the search engines: PubMed, Medline, EconLit, Embase and Economic Evaluation Database. The following 3 categories were considered: (i) therapy (chemotherapy [Mesh]); (ii) dosage form (oral [Mesh]); and (iii) research design (economics [Mesh] OR cost-benefit analysis [Mesh]). These included full-text, English articles incorporating comparative economic evaluations of oral chemotherapies. Excluded studies were: non-comparative, non-economic based models, of secondary indications (not cancer), and/or reviews. This process was followed by two stages of manual exclusion; based on title/abstract content and, then, the full-text article content. A data extraction form was developed and pilot tested for the purpose of data collection. Article inclusion and data collection was conducted twice, each by a different investigator. Included articles were finally summarized according to methodological themes of interest. Results: A total of 235 records were identified. After screening and removing duplicates, only 18 studies were deemed eligible study inclusion. It was found that the pharmacoeconomics evaluations were mostly of cost-utility analyses (13 out of 18), measuring cost per quality adjusted life years (QALY) gained, and from the payer perspective (15 out of 18). Primary sources of clinical and economic data were randomized clinical trials, expert panels and medical charts. Other sources included medicine databases, reimbursement schedules, drug policies and price lists, treatment guidelines, case reports and patient interviews. In 13 out of 18 cases, dominance status was reported in favor of OACDs, in relation to cost and/or clinical effect. Decision analytic modeling was used in the majority of studies, mostly constituting Markov modeling for the simulation of life long use of drugs. Sensitivity analyses were conducted in most studies, mostly constituting one-way sensitivity analysis to ensure robustness of study results. The types of cancers, where the effect of OACDs was studied, were the metastatic renal carcinoma, gastrointestinal tumors, colon cancer, chronic myeloid leukemia and non-small cell lung cancer. Most included articles were published during the last seven years. Most studies were conducted in the UK, US and Europe, while none were conducted in Australia or the Middle East. Conclusion: This is first systematic review of the economic methods used in the evaluation of OACDs. There seems to be a recent increasing interest of this type of research, whereby the QALYs measurement is of priority for the decision making in relation to the comparative value of OACDs in practices. Most important, is that despite the higher acquisition cost, OACDs were demonstrated to be mostly superior over the parenteral alternatives. Furthermore, the decision analytic modeling, mostly constituting Markov modeling, is valued and enables a structured decision analyses of therapies. The pharmacoeconomics research is difficult to generalize, whereby published economic evaluations are locally specific, especially for the purpose of practical interpretation. The current review of literature proposes valuable methods for the local Qatari implementation and guidance of decision makers. This is most relevant to National Center for Cancer Care & Research (NCCCR), which is the only tertiary service provider of cancer therapy in Qatar, where confusion in relation to the use of oral chemotherapies exists, particularly the therapies vinorelbine and capacitabine.qscienc

    Corporate governance practices of insurance companies: attributes and accountability

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    The paper attempts to examine the influence and relationship of corporate governance attributes with regard to accountability of corporate governance practices for insurance companies in Labuan International Business and Financial Centre. The findings of the study reveal that rules and regulations disclosure practice, directors’ qualifications and experiences, and audit committee’s effectiveness are found to be the key factors that influence the corporate governance regime. In all, the paper concludes that there is substantial scope for improvement in the current practices and suggests that effective corporate governance system is crucial to enhancing the performance of a firm

    Mortality from gastrointestinal congenital anomalies at 264 hospitals in 74 low-income, middle-income, and high-income countries: a multicentre, international, prospective cohort study

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    Summary Background Congenital anomalies are the fifth leading cause of mortality in children younger than 5 years globally. Many gastrointestinal congenital anomalies are fatal without timely access to neonatal surgical care, but few studies have been done on these conditions in low-income and middle-income countries (LMICs). We compared outcomes of the seven most common gastrointestinal congenital anomalies in low-income, middle-income, and high-income countries globally, and identified factors associated with mortality. Methods We did a multicentre, international prospective cohort study of patients younger than 16 years, presenting to hospital for the first time with oesophageal atresia, congenital diaphragmatic hernia, intestinal atresia, gastroschisis, exomphalos, anorectal malformation, and Hirschsprung’s disease. Recruitment was of consecutive patients for a minimum of 1 month between October, 2018, and April, 2019. We collected data on patient demographics, clinical status, interventions, and outcomes using the REDCap platform. Patients were followed up for 30 days after primary intervention, or 30 days after admission if they did not receive an intervention. The primary outcome was all-cause, in-hospital mortality for all conditions combined and each condition individually, stratified by country income status. We did a complete case analysis. Findings We included 3849 patients with 3975 study conditions (560 with oesophageal atresia, 448 with congenital diaphragmatic hernia, 681 with intestinal atresia, 453 with gastroschisis, 325 with exomphalos, 991 with anorectal malformation, and 517 with Hirschsprung’s disease) from 264 hospitals (89 in high-income countries, 166 in middleincome countries, and nine in low-income countries) in 74 countries. Of the 3849 patients, 2231 (58·0%) were male. Median gestational age at birth was 38 weeks (IQR 36–39) and median bodyweight at presentation was 2·8 kg (2·3–3·3). Mortality among all patients was 37 (39·8%) of 93 in low-income countries, 583 (20·4%) of 2860 in middle-income countries, and 50 (5·6%) of 896 in high-income countries (p<0·0001 between all country income groups). Gastroschisis had the greatest difference in mortality between country income strata (nine [90·0%] of ten in lowincome countries, 97 [31·9%] of 304 in middle-income countries, and two [1·4%] of 139 in high-income countries; p≤0·0001 between all country income groups). Factors significantly associated with higher mortality for all patients combined included country income status (low-income vs high-income countries, risk ratio 2·78 [95% CI 1·88–4·11], p<0·0001; middle-income vs high-income countries, 2·11 [1·59–2·79], p<0·0001), sepsis at presentation (1·20 [1·04–1·40], p=0·016), higher American Society of Anesthesiologists (ASA) score at primary intervention (ASA 4–5 vs ASA 1–2, 1·82 [1·40–2·35], p<0·0001; ASA 3 vs ASA 1–2, 1·58, [1·30–1·92], p<0·0001]), surgical safety checklist not used (1·39 [1·02–1·90], p=0·035), and ventilation or parenteral nutrition unavailable when needed (ventilation 1·96, [1·41–2·71], p=0·0001; parenteral nutrition 1·35, [1·05–1·74], p=0·018). Administration of parenteral nutrition (0·61, [0·47–0·79], p=0·0002) and use of a peripherally inserted central catheter (0·65 [0·50–0·86], p=0·0024) or percutaneous central line (0·69 [0·48–1·00], p=0·049) were associated with lower mortality. Interpretation Unacceptable differences in mortality exist for gastrointestinal congenital anomalies between lowincome, middle-income, and high-income countries. Improving access to quality neonatal surgical care in LMICs will be vital to achieve Sustainable Development Goal 3.2 of ending preventable deaths in neonates and children younger than 5 years by 2030

    أثر استخدام استراتيجية الصف المقلوب في تنمية الكفاءة الذاتية لدى طلبة الصف الثاني عشر بسلطنة عمان في مادة الرياضيات = Athar Istikhdam Istiratijiyyah al-Saff al-Maqlub fi Tanmiyah al-Kafa'ah al-Dhatiyyah Lada Talabah al-Saff al-Thani 'Asyar bi Sultanah Oman fi Madah al-Riyadhiyyat

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    أظهرت جائحة كورونا (Covid-19) وما نتج عنها من توقف تام في الفصول الدراسية، مدى الحاجة الى البحث عن طرق تعليمية جديدة تستفيد من التقدم الكبير في التكنولوجيا، مثل قلب العملية التعليمية، او ما يعرف بالصفوف المقلوبة بحيث يكون الطالب هو محور العملية التعليمية، ويكتسب المعرفة من خلال وسائل التكنولوجيا. لذلك يهدف هذا البحث الى اختبار أثر استراتيجية الصف المقلوب على الكفاءة الذاتية لدى طلبة الصف الثاني عشر في مادة الرياضيات في سلطنة عمان. حيث اعتمدت الباحثة على المنهج شبه التجريبي الذي يعُد منهجاً مناسباً لطبيعة واهداف هذه الدراسة. وتكونت عينة الدراسة من (52) طالب وطالبة، تم تقسيمهم الى مجموعتين، مجموعة ضابطة تم تدريسها باالطريقة الاعتيادية، ومجموعة تجريبية تم تدريسها بطريقة الصف المقلوب. وتم اجراء التحليلات الاحصائية باستخدام برنامج ال SPSS لاجراء التحليلات الوصفية، وتم استخدام تحليل التباين الثنائي ذو القياسات المتكررة (Repeated Measures ANOVA)، لاختبار فروض الدراسة. وكشفت نتائج الدراسة عن وجود أثر ايجابي لاستخدام استراتيجية الصف المقلوب على الكفاءة الذاتية. وتمت مناقشة وتفسير نتائج الدراسة على ضوء الإطار النظري، ونتائج الدراسات السابقة، وتضمنت الدراسة عدًدا من التوصيات وبعض المقترحات للدراسات المستقبلية
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