RNAi: An emerging field of molecular research

RNA silencing, named as co-suppression or post transcriptional gene silencing (PTGS) was found in transgenic plants which was the result of cellular mRNA degradation and silencing of gene expression.RNA interference (RNAi) is a specific technique using only a few double stranded RNA (dsRNA) molecules to stop the expression which has made it one of the important areas in molecular biology. By introducing a gene into the host genome which is highly homologous to an endogenous gene, the RNA silencing is initiated. Double-stranded RNA (dsRNA) is cut by the enzyme “Dicer” producing small interfering RNAs (siRNAs) which combine with RNA-induced silencing complex (RISC). RISC, a protein complex, binds one strand of siRNA with mRNA of native target gene for destruction, resulting in gene silencing. The mechanism of RNAi offers a quick and easy way to determine the function of a gene. In this review, we discuss the history, components, mechanism and the application of RNA interference

Gas hydrate inhibition by perturbation of liquid water structure

Natural gas hydrates are icy crystalline materials that contain hydrocarbons, which are the primary energy source for this civilization. The abundance of naturally occurring gas hydrates leads to a growing interest in exploitation. Despite their potential as energy resources and in industrial applications, there is insufficient understanding of hydrate kinetics, which hinders the utilization of these invaluable resources. Perturbation of liquid water structure by solutes has been proposed to be a key process in hydrate inhibition, but this hypothesis remains unproven. Here, we report the direct observation of the perturbation of the liquid water structure induced by amino acids using polarized Raman spectroscopy, and its influence on gas hydrate nucleation and growth kinetics. Amino acids with hydrophilic and/or electrically charged side chains disrupted the water structure and thus provided effective hydrate inhibition. The strong correlation between the extent of perturbation by amino acids and their inhibition performance constitutes convincing evidence for the perturbation inhibition mechanism. The present findings bring the practical applications of gas hydrates significantly closer, and provide a new perspective on the freezing and melting phenomena of naturally occurring gas hydrates.112716Ysciescopu

Inhibition of methane and natural gas hydrate formation by altering the structure of water with amino acids

Natural gas hydrates are solid hydrogen-bonded water crystals containing small molecular gases. The amount of natural gas stored as hydrates in permafrost and ocean sediments is twice that of all other fossil fuels combined. However, hydrate blockages also hinder oil/gas pipeline transportation, and, despite their huge potential as energy sources, our insufficient understanding of hydrates has limited their extraction. Here, we report how the presence of amino acids in water induces changes in its structure and thus interrupts the formation of methane and natural gas hydrates. The perturbation of the structure of water by amino acids and the resulting selective inhibition of hydrate cage formation were observed directly. A strong correlation was found between the inhibition efficiencies of amino acids and their physicochemical properties, which demonstrates the importance of their direct interactions with water and the resulting dissolution environment. The inhibition of methane and natural gas hydrate formation by amino acids has the potential to be highly beneficial in practical applications such as hydrate exploitation, oil/gas transportation, and flow assurance. Further, the interactions between amino acids and water are essential to the equilibria and dynamics of many physical, chemical, biological, and environmental processes.11Ysciescopu

Visual based Tomato Size Measurement System for an Indoor Farming Environment

As technology progresses, smart automated systems will serve an increasingly important role in the agricultural industry. Current existing vision systems for yield estimation face difficulties in occlusion and scalability as they utilize a camera system that is large and expensive, which are unsuitable for orchard environments. To overcome these problems, this paper presents a size measurement method combining a machine learning model and depth images captured from three low cost RGBD cameras to detect and measure the height and width of tomatoes. The performance of the presented system is evaluated on a lab environment with real tomato fruits and fake leaves to simulate occlusion in the real farm environment. To improve accuracy by addressing fruit occlusion, our three-camera system was able to achieve a height measurement accuracy of 0.9114 and a width accuracy of 0.9443.Comment: 10 Pages, 12 Figure

Drop Traffic in Microfluidic Ladder Networks with Fore-Aft Structural Asymmetry

We investigate the dynamics of pairs of drops in microfluidic ladder networks with slanted bypasses, which break the fore-aft structural symmetry. Our analytical results indicate that unlike symmetric ladder networks, structural asymmetry introduced by a single slanted bypass can be used to modulate the relative drop spacing, enabling them to contract, synchronize, expand, or even flip at the ladder exit. Our experiments confirm all these behaviors predicted by theory. Numerical analysis further shows that while ladder networks containing several identical bypasses are limited to nearly linear transformation of input delay between drops, mixed combination of bypasses can cause significant non-linear transformation enabling coding and decoding of input delays.Comment: 4 pages, 5 figure

Coarse-grained reconfigurable array architectures

Coarse-Grained Reconfigurable Array (CGRA) architectures accelerate the same inner loops that benefit from the high ILP support in VLIW architectures. By executing non-loop code on other cores, however, CGRAs can focus on such loops to execute them more efficiently. This chapter discusses the basic principles of CGRAs, and the wide range of design options available to a CGRA designer, covering a large number of existing CGRA designs. The impact of different options on flexibility, performance, and power-efficiency is discussed, as well as the need for compiler support. The ADRES CGRA design template is studied in more detail as a use case to illustrate the need for design space exploration, for compiler support and for the manual fine-tuning of source code

Twisted Bethe equations from a twisted S-matrix

All-loop asymptotic Bethe equations for a 3-parameter deformation of AdS5/CFT4 have been proposed by Beisert and Roiban. We propose a Drinfeld twist of the AdS5/CFT4 S-matrix, together with c-number diagonal twists of the boundary conditions, from which we derive these Bethe equations. Although the undeformed S-matrix factorizes into a product of two su(2|2) factors, the deformed S-matrix cannot be so factored. Diagonalization of the corresponding transfer matrix requires a generalization of the conventional algebraic Bethe ansatz approach, which we first illustrate for the simpler case of the twisted su(2) principal chiral model. We also demonstrate that the same twisted Bethe equations can alternatively be derived using instead untwisted S-matrices and boundary conditions with operatorial twists.Comment: 42 pages; v2: a new appendix on sl(2) grading, 2 additional references, and some minor changes; v3: improved Appendix D, additional references, and further minor changes, to appear in JHE