Learning to breathe: developmental phase transitions in oxygen status

Plants are developmentally disposed to considerable changes in oxygen availability, yet our understanding of the importance of hypoxia is almost entirely limited to stress biology. Differential patterns of the abundance of oxygen, nitric oxide (.NO) and reactive oxygen species (ROS), and redox potential occur in organs and meristems, and examples are emerging in the literature of mechanistic relationships of these to development. Here, we describe the convergence of these cues in meristematic and reproductive tissues, and discuss the evidence for regulated hypoxic niches, within which oxygen-, ROS-, .NO- and redox-dependent signalling curate developmental transitions in plants

The LATERAL ORGAN BOUNDARIES Domain gene family in grapevine: Genome-wide characterization and expression analyses during developmental processes and stress responses

LATERAL ORGAN BOUNDARIES (LOB) DOMAIN (LBD) constitute a family of plant-specific transcription factors with key roles in the regulation of plant organ development, pollen development, plant regeneration, pathogen response, and anthocyanin and nitrogen metabolisms. However, the role of LBDs in fruit ripening and in grapevine (Vitis vinifera L.) development and stress responses is poorly documented. By performing a model curation of LBDs in the latest genome annotation 50 genes were identified. Phylogenetic analysis showed that LBD genes can be grouped into two classes mapping on 16 out of the 19 V. vinifera chromosomes. New gene subclasses were identified that have not been characterized in other species. Segmental and tandem duplications contributed significantly to the expansion and evolution of the LBD gene family in grapevine as noticed for other species. The analysis of cis-regulatory elements and transcription factor binding sites in the VviLBD promoter regions suggests the involvement of several hormones in the regulation of LBDs expression. Expression profiling suggest the involvement of LBD transcription factors in grapevine development, berry ripening and stress responses. Altogether this study provides valuable information and robust candidate genes for future functional analysis aiming to clarify mechanisms responsible for the onset of fruit ripening and fruit defense strategies. © 2017 The Author(s)

Review of applications of SIMDEUM, a stochastic drinking water demand model with small temporal and spatial scale

Many researchers have developed drinking water demand models with various temporal and spatial scales. A limited number of models are available at a temporal scale of one second and a spatial scale of a single home. Reasons for building these models were described in the papers in which the models were introduced, along with a discussion on potential applications. However, the predicted applications are seldom re-examined. As SIMDEUM, a stochastic end-use model for drinking water demand, has often been applied in research and practice since it was developed, we are reexamining its applications in this paper. SIMDEUM’s original purpose was to calculate maximum demands in order to be able to design self-cleaning networks. Yet, the model has been useful in many more applications. This paper gives an overview of the many fields of application of SIMDEUM and shows where this type of demand model is indispensable and where it has limited practical value. This overview also leads to an understanding of requirements on demand models in various applications

Review of applications for SIMDEUM, a stochastic drinking water demand model with a small temporal and spatial scale

Many researchers have developed drinking water demand models with various temporal and spatial scales. A limited number of models is available at a temporal scale of 1 s and a spatial scale of a single home. The reasons for building these models were described in the papers in which the models were introduced, along with a discussion on their potential applications. However, the predicted applications are seldom re-examined. SIMDEUM, a stochastic end-use model for drinking water demand, has often been applied in research and practice since it was developed. We are therefore re-examining its applications in this paper. SIMDEUM's original purpose was to calculate maximum demands in order to design self-cleaning networks. Yet, the model has been useful in many more applications. This paper gives an overview of the many fields of application for SIMDEUM and shows where this type of demand model is indispensable and where it has limited practical value. This overview also leads to an understanding of the requirements for demand models in various applications

The VLT-FLAMES Tarantula Survey X: Evidence for a bimodal distribution of rotational velocities for the single early B-type stars

Aims: Projected rotational velocities (\vsini) have been estimated for 334 targets in the VLT-FLAMES Tarantula survey that do not manifest significant radial velocity variations and are not supergiants. They have spectral types from approximately O9.5 to B3. The estimates have been analysed to infer the underlying rotational velocity distribution, which is critical for understanding the evolution of massive stars. Methods: Projected rotational velocities were deduced from the Fourier transforms of spectral lines, with upper limits also being obtained from profile fitting. For the narrower lined stars, metal and non-diffuse helium lines were adopted, and for the broader lined stars, both non-diffuse and diffuse helium lines; the estimates obtained using the different sets of lines are in good agreement. The uncertainty in the mean estimates is typically 4% for most targets. The iterative deconvolution procedure of Lucy has been used to deduce the probability density distribution of the rotational velocities. Results: Projected rotational velocities range up to approximately 450 \kms and show a bi-modal structure. This is also present in the inferred rotational velocity distribution with 25% of the sample having $0\leq$\ve$\leq$100\,\kms and the high velocity component having \ve$\sim 250$\,\kms. There is no evidence from the spatial and radial velocity distributions of the two components that they represent either field and cluster populations or different episodes of star formation. Be-type stars have also been identified. Conclusions: The bi-modal rotational velocity distribution in our sample resembles that found for late-B and early-A type stars. While magnetic braking appears to be a possible mechanism for producing the low-velocity component, we can not rule out alternative explanations.Comment: to be publisged in A&

Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea

A main goal of population geneticists is to study patterns of gene flow to gain a better understanding of the population structure in a given organism. To date most efforts have been focused on studying gene flow at either broad scales to identify barriers to gene flow and isolation by distance or at fine spatial scales in order to gain inferences regarding reproduction and local dispersal. Few studies have measured connectivity at multiple spatial scales and have utilized novel tools to test the influence of both environment and geography on shaping gene flow in an organism. Here a seascape genetics approach was used to gain insight regarding geographic and ecological barriers to gene flow of a common reef sponge, Stylissa carteri in the Red Sea. Furthermore, a small-scale (<1 km) analysis was also conducted to infer reproductive potential in this organism. At the broad scale, we found that sponge connectivity is not structured by geography alone, but rather, genetic isolation in the southern Red Sea correlates strongly with environmental heterogeneity. At the scale of a 50-m transect, spatial autocorrelation analyses and estimates of full-siblings revealed that there is no deviation from random mating. However, at slightly larger scales (100–200 m) encompassing multiple transects at a given site, a greater proportion of full-siblings was found within sites versus among sites in a given location suggesting that mating and/or dispersal are constrained to some extent at this spatial scale. This study adds to the growing body of literature suggesting that environmental and ecological variables play a major role in the genetic structure of marine invertebrate populations

Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea

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The VLT-FLAMES Tarantula Survey XXI. Stellar spin rates of O-type spectroscopic binaries

The initial distribution of spin rates of massive stars is a fingerprint of their elusive formation process. It also sets a key initial condition for stellar evolution and is thus an important ingredient in stellar population synthesis. So far, most studies have focused on single stars. Most O stars are however found in multiple systems. By establishing the spin-rate distribution of a sizeable sample of O-type spectroscopic binaries and by comparing the distributions of binary sub-populations with one another as well as with that of presumed single stars in the same region, we aim to constrain the initial spin distribution of O stars in binaries, and to identify signatures of the physical mechanisms that affect the evolution of the massive stars spin rates. We use ground-based optical spectroscopy obtained in the framework of the VLT-FLAMES Tarantula Survey (VFTS) to establish the projected equatorial rotational velocities (\vrot) for components of 114 spectroscopic binaries in 30 Doradus. The \vrot\ values are derived from the full-width at half-maximum (FWHM) of a set of spectral lines, using a FWHM vs. \vrot\ calibration that we derive based on previous line analysis methods applied to single O-type stars in the VFTS sample. The overall \vrot\ distribution of the primary stars resembles that of single O-type stars in the VFTS, featuring a low-velocity peak (at \vrot < 200 kms) and a shoulder at intermediate velocities (200 < \vrot < 300 kms). The distributions of binaries and single stars however differ in two ways. First, the main peak at \vrot \sim100 kms is broader and slightly shifted toward higher spin rates in the binary distribution compared to that of the presumed-single stars. Second, the \vrot distribution of primaries lacks a significant population of stars spinning faster than 300 kms while such a population is clearly present in the single star sample.Comment: 16 pages, 16 figures, paper accepted in Astronomy & Astrophysic