Anomalous Fluctuation of Halogens in Relation to the Pollution Status along Lake Mariout, Egypt

This paper aimed to study the anomalous fluctuation of halogens with respect to the pollution status in surface water (w), pore water (p), and sediments (s) of Lake Mariout. It provided a framework for understanding the distribution of dissolved and precipitated halogen salts related to the pollution status of the lake. The study cleared out that bromide was only the most abundant halogen in the three studied partitions. On contrast, sediment’s partition contained the lowest chloride content. Fluoride minerals, especially, fluorapatites and carbonate-fluorapatite (FAP and CFAP), had high Saturation Index (SI) values in surface water (42.77–51.95 and 16.04–60.89, respectively) and in pore water (51.26–54.60 and 17.52–78.33, respectively). Bromide and chloride were mainly found in the soluble forms in the surface water and pore waters. Iodide salts, (Ca(IO3)2 and Ca(IO3)2.6H2O), were moderately precipitated in surface and pore waters. Thus, SI content reflected that halogens, especially fluoride and iodide, played a vital role in reducing lake pollution. Fluorite (CaF2) and sellaïte (MgF2) could only be formed in pore water, while calcite and aragonite could be deposited from surface water. In addition, Cl was mainly found in the forms of NaCl, CaCl2, MgCl2, and KCl in surface and pore waters. The multivariate analysis revealed that fluoride precipitate may serve in decreasing the dissolved salt pollution. Multivariate analysis showed that in the long run, the fluoride precipitation in FAP and CFAP can significantly adsorb and absorb various pollutants and can protect the lake from pollution. The ecological risk assessment conducted by calculating the enrichment factor (EF) showed that the lake was still unpolluted. Regarding human health risks, at appropriate levels of human health and safety, the hazard quotient (HQ) and hazard index (HI) of halogens found to be lower than these reported levels. Hence, ingestion and dermal absorption routes of halogens by surface water and sediments did not pose any adverse effects to population reflecting uncontaminated status of Lake Mariout

The association of TRAP1 gene and TNFSF4 gene polymorphisms with susceptibility of rheumatoid arthritis in a sample of Egyptian patients

Background/aim The disclosure of new gene polymorphisms and their association with rheumatoid arthritis (RA) susceptibility open new windows for better clarification of disease pathogenesis, leading to discovering new therapeutic targets. The present study aimed to explore the association of tumor necrosis factor receptor-associated protein 1 (TRAP1) gene rs8055172 and tumor necrosis factor superfamily number 4 (TNFSF4) gene rs1234315 with susceptibility of RA in a sample of Egyptian patients. Patients and methods This study included 200 RA patients from the Rheumatology Department Outpatients’ Clinic of Kasr El Ainy Teaching Hospital and Centre of Medical Excellence of National Research Centre, Cairo, Egypt. The study also included 200 healthy participants with no family history of autoimmunity serving as a control group. Genotyping of the studied polymorphisms was done using real-time PCR technique. Results The control group showed no significant deviations from Hardy–Weinberg equilibrium regarding rs8055172 and rs1234315 (P=0.6 and 0.2, respectively). Regarding genotypes of rs8055172, the CC homozygous genotype was more observed among patients. Therefore, the frequency of C allele is higher among RA patients compared with healthy controls (P=0.001). Logistic regression analysis of rs8055172 genotypes with susceptibility of RA was only significant under the recessive model, where patients carrying CC allele have higher susceptibility to develop RA (P=0.001, odds ratio=3.1) compared with patients carrying TT and CT allele. On the other hand, distribution of TNFSF4 (rs1234315) genotypes showed no significant difference between controls and RA group (P=0.7). Conclusions Our results indicate that the TRAP1 gene rs8055172 associates with RA in a population of Egyptians from Cairo, while TNFSF4 gene rs1234315 plays no role in disease susceptibility. A large-scale study to assess the association between TRAP1 gene polymorphism, TRAP1 mRNA expression, and TRAP1 protein level, is needed to clarify the role of TRAP1 gene polymorphism in RA pathogenesis

Ecofriendly Bioagents, Parthenocissus quinquefolia, and Plectranthus neochilus Extracts to Control the Early Blight Pathogen (Alternaria solani) in Tomato

Background: early blight disease caused by Alternaria solani is one of the most destructive diseases of the tomato, reducing tomato production globally. Methods: four fungal isolates were collected from four tomato cultivars and identified through morphological characterization and polymerase chain reaction (PCR) amplification of the internal transcript spacer (ITS) region. Plectranthus neochilus and Parthenocissus quinquefolia methanol extracts and the bioagents Trichoderma viride and Pseudomonas fluorescens were used as antifungal agents in vitro and in vivo and compared with chlorothalonil, a reference chemical fungicide. HPLC analysis of the plant extracts was used to identify the main flavonoid compounds, namely, rutin and myricetin. Results: molecular characterization showed that the fungal isolates belonged to A. solani. The results of in vitro antifungal activity studies revealed that chlorothalonil, at a concentration of 2500 mg/L, showed the highest inhibition percentage of fungal growth (IPFG) against A. solani (84.4%), followed by the bioagents T. viride and P. fluorescens, with IPFG values of 72.9% and 67.9%, respectively. Moderate to weak activity was found against A. solani when P. neochilus and P. quinquefolia extracts were applied at a concentration of 2500 mg/L, with an IPFG value of 54% for both extracts. The results of in vivo spray application showed that T. viride and chlorothalonil, as well as P. fluorescens, significantly reduced the disease index of early blight, and followed by the P. neochilus and P. quinquefolia extracts. By HPLC, the flavonoid compounds rutin and myricetin were identified in P. neochilus (leaf) with amounts of 2429.60 and 75.92 mg/100 g of extract, and in P. quinquefolia (fruit), with amounts of 1891.60 and 241.06 mg/100 g of extract, respectively. Conclusions: the results of the bioactivity of plant extracts and the bioagents indicate a vital role as antifungal activity against A. solani

Clinico-Pathological Features and Immunohistochemical Comparison of p16, p53, and Ki-67 Expression in Muscle-Invasive and Non-Muscle-Invasive Conventional Urothelial Bladder Carcinoma

Introduction: The identification of bladder detrusor muscle invasion in urothelial cancer is essential for prognosis and management. We studied the clinical, histological, and immunohistochemical expression of p16, p53, and Ki-67 in urothelial detrusor muscle-invasive bladder cancer (MIBC) and urothelial non-detrusor muscle-invasive bladder cancer (NMIBC) in Egyptian patients. Methods: Sixty-two bladder urothelial cancer cases obtained through TURBT were included and divided into two groups: (MIBC, stage T2) and NMIBC (T1). Tissue blocks were recut and re-examined microscopically; then, the immunostaining of p16, p53, and Ki-67 was performed to compare both groups and evaluate the 13% cut-off for Ki-67, 20% for p53, and p16 intensity in various conditions aided by telepathology technology. Results and conclusion: Hematuria was the main clinical first presentation, with no significant difference between either group. The mean age was 61.6 years, with male predominance (52 males and 10 females). The absence of papillary histological pattern was associated with a higher stage, including detrusor muscle invasion (p = 0.000). The overall average percent of p53 immunostaining was 12.9%, revealing no significant difference between MIBC and NMIBC when a cut-off of 20% was implicated. The Ki-67 expression was correlated with higher grade and muscle invasion; however, no association was found with the other two markers’ expression. The negative immunostaining of p16 was associated with low grade and NMIBC in the case of the preservation of the papillary pattern. We recommend further studies on the cut-off of widely used markers and more immunohistochemical and genetic studies on the p16(INK4A), taking into consideration the histological pattern of conventional carcinomas