Preliminary results using a P300 brain-computer interface speller: a possible interaction effect between presentation paradigm and set of stimuli

Fernández-Rodríguez Á., Medina-Juliá M.T., Velasco-Álvarez F., Ron-Angevin R. (2019) Preliminary Results Using a P300 Brain-Computer Interface Speller: A Possible Interaction Effect Between Presentation Paradigm and Set of Stimuli. In: Rojas I., Joya G., Catala A. (eds) Advances in Computational Intelligence. IWANN 2019. Lecture Notes in Computer Science, vol 11506. Springer, ChamSeveral proposals to improve the performance controlling a P300-based BCI speller have been studied using the standard row-column presentation (RCP) par-adigm. However, this paradigm could not be suitable for those patients with lack of gaze control. To solve that, the rapid serial visual presentation (RSVP) para-digm, which presents the stimuli located in the same position, has been proposed in previous studies. Thus, the aim of the present work is to assess if a stimuli set of pictures that improves the performance in RCP, could also improve the per-formance in a RSVP paradigm. Six participants have controlled four conditions in a calibration task: letters in RCP, pictures in RCP, letters in RSVP and pictures in RSVP. The results showed that pictures in RCP obtained the best accuracy and information transfer rate. The improvement effect given by pictures was greater in the RCP paradigm than in RSVP. Therefore, the improvements reached under RCP may not be directly transferred to the RSVP.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Identification of quantitative trait loci and candidate genes for primary metabolite content in strawberry fruit

Improvement of nutritional and organoleptic quality of fruits is a key goal in current strawberry breeding programs. The ratio of sugars to acids is a determinant factor contributing to fruit liking, although different sugars and acids contribute in varying degrees to this complex trait. A segregating F1 population of 95 individuals, previously characterized for several fruit quality characters, was used to map during 2 years quantitative trait loci (QTL) for 50 primary metabolites, L -ascorbic acid (L-AA) and other related traits such as soluble solid content (SSC), titratable acidity (TA), and pH. A total of 133 mQTL were detected above the established thresholds for 44 traits. Only 12.9% of QTL were detected in the 2 years, suggesting a large environmental influence on primary metabolite content. An objective of this study was the identification of key metabolites that were associated to the overall variation in SSC and acidity. As it was observed in previous studies, a number of QTL controlling several metabolites and traits were co-located in homoeology group V (HG V). mQTL controlling a large variance in raffinose, sucrose, succinic acid, and L-AA were detected in approximate the same chromosomal regions of different homoeologous linkage groups belonging to HG V. Candidate genes for selected mQTL are proposed based on their co-localization, on the predicted function, and their differential gene expression among contrasting F1 progeny lines. RNA-seq analysis from progeny lines contrasting in L-AA content detected 826 differentially expressed genes and identified Mannose-6-phosphate isomerase, FaM6PI1, as a candidate gene contributing to natural variation in ascorbic acid in strawberry frui

Biomass dust explosions: CFD simulations and venting experiments in a 1 m3 silo

This study presents CFD simulations of biomass dust explosions in a newly developed experimental 1 m3 silo apparatus with variable venting, designed and fabricated to operate similarly to the explosivity test standards. The aim of the study is to validate a CFD model under development and investigate its capability to capture the transient effects of a vented explosion. The model is based on OpenFOAM and solves the multiphase (gas-particle) flow using an Eulerian-Lagrangian approach in a two-way regime. It considers the detailed thermochemical conversion of biomass, including moisture evaporation, devolatilization, and char oxidation, along with the homogeneous combustion of gases, turbulence, and radiative heat transfer. The explosion is analyzed in all stages, i.e., dust cloud dispersion, ignition, closed explosion, and vented explosion. The results indicate excellent agreement between the CFD model and experimental tests throughout the sequence. Our findings highlight the critical role of particle size in dust cloud distribution and pre-ignition turbulence, which significantly influences flame dynamics and the explosion itself. This model shows great promise and encourages its application for future investigations of biomass dust explosions in larger-scale geometries, especially in venting situations that fall out of the scope of the NFPA 68 or EN 14491 standards, and to help design effective safety measures to prevent such incidents

Structural basis of a redox-dependent conformational switch that regulates the stress kinase p38α

Many functional aspects of the protein kinase p38α have been illustrated by more than three hundred structures determined in the presence of reducing agents. These structures correspond to free forms and complexes with activators, substrates, and inhibitors. Here we report the conformation of an oxidized state with an intramolecular disulfide bond between Cys119 and Cys162 that is conserved in vertebrates. The structure of the oxidized state does not affect the conformation of the catalytic site, but alters the docking groove by partially unwinding and displacing the short αD helix due to the movement of Cys119 towards Cys162. The transition between oxidized and reduced conformations provides a mechanism for fine-tuning p38α activity as a function of redox conditions, beyond its activation loop phosphorylation. Moreover, the conformational equilibrium between these redox forms reveals an unexplored cleft for p38α inhibitor design that we describe in detail.© 2023. The Author(s)

Alkali activation of vitreous calcium aluminosilicate derived from glass fiber waste

The properties and microstructure of alkali-activated (AA) vitreous calcium aluminosilicate (VCAS) are presented in this paper. VCAS is manufactured from a by-product of the glass fiber industry and has been activated using NaOH and KOH solutions. The microstructure and mechanical properties of AA VCAS pastes and mortars are reported. The results show that depending on the type and concentration of hydroxide solution used, mortar samples with compressive strengths up to 77 MPa can be formed after curing for three days at 65 °C. The research demonstrates the potential of VCAS to produce AA cements and the importance of alkali type and concentration in optimizing properties and microstructure.Mitsuuchi Tashima, M.; Soriano Martinez, L.; Borrachero Rosado, MV.; Monzó Balbuena, JM.; Cheeseman, CR.; Paya Bernabeu, JJ. (2012). Alkali activation of vitreous calcium aluminosilicate derived from glass fiber waste. Journal of Sustainable Cement-Based Materials. 1(3):83-93. doi:10.1080/21650373.2012.742610S839313Mahasenan N, Smith S, Humphreys K. The cement industry and global climate change: current and potential future cement industry CO2emissions. Greenhouse Gas Control Technologies – 6th International Conference. Oxford: Pergamon; 2003. p. 995–1000.Schneider, M., Romer, M., Tschudin, M., & Bolio, H. (2011). Sustainable cement production—present and future. Cement and Concrete Research, 41(7), 642-650. doi:10.1016/j.cemconres.2011.03.019WBCSD – World Business Council for Sustainable Development. Cement industry energy and CO2performance – Getting numbers right. Edited by WBCSD, Geneva-Switzerland (ISBN 978-3-940388-48-3). 2009.Shi, C., Jiménez, A. F., & Palomo, A. (2011). New cements for the 21st century: The pursuit of an alternative to Portland cement. Cement and Concrete Research, 41(7), 750-763. doi:10.1016/j.cemconres.2011.03.016Duxson, P., Fernández-Jiménez, A., Provis, J. L., Lukey, G. C., Palomo, A., & van Deventer, J. S. J. (2006). Geopolymer technology: the current state of the art. Journal of Materials Science, 42(9), 2917-2933. doi:10.1007/s10853-006-0637-zFernández-Jiménez, A., Palomo, A., & Criado, M. (2005). Microstructure development of alkali-activated fly ash cement: a descriptive model. Cement and Concrete Research, 35(6), 1204-1209. doi:10.1016/j.cemconres.2004.08.021Hossain, A. B., Shirazi, S. A., Persun, J., & Neithalath, N. (2008). Properties of Concrete Containing Vitreous Calcium Aluminosilicate Pozzolan. Transportation Research Record: Journal of the Transportation Research Board, 2070(1), 32-38. doi:10.3141/2070-05Neithalath, N., Persun, J., & Hossain, A. (2009). Hydration in high-performance cementitious systems containing vitreous calcium aluminosilicate or silica fume. Cement and Concrete Research, 39(6), 473-481. doi:10.1016/j.cemconres.2009.03.006Tashima MM, Soriano L, Borrachero MV, Monzó J, Payá J. Effect of curing time on the microstructure and mechanical strength development of alkali activated nbinders based on vitreous calcium aluminosilicate (VCAS). Bull. Mater. Sci. in press.Hemmings RT, Nelson RD, Graves PL, Cornelius BJ. White pozzolan composition and blended cements containing same. Patent US6776838. 2004.Provis, J. L., Lukey, G. C., & van Deventer, J. S. J. (2005). Do Geopolymers Actually Contain Nanocrystalline Zeolites? A Reexamination of Existing Results. Chemistry of Materials, 17(12), 3075-3085. doi:10.1021/cm050230iCriado, M., Fernández-Jiménez, A., de la Torre, A. G., Aranda, M. A. G., & Palomo, A. (2007). An XRD study of the effect of the SiO2/Na2O ratio on the alkali activation of fly ash. Cement and Concrete Research, 37(5), 671-679. doi:10.1016/j.cemconres.2007.01.013Rees, C. A., Provis, J. L., Lukey, G. C., & van Deventer, J. S. J. (2007). In Situ ATR-FTIR Study of the Early Stages of Fly Ash Geopolymer Gel Formation. Langmuir, 23(17), 9076-9082. doi:10.1021/la701185gLee, W. K. W., & van Deventer, J. S. J. (2003). Use of Infrared Spectroscopy to Study Geopolymerization of Heterogeneous Amorphous Aluminosilicates. Langmuir, 19(21), 8726-8734. doi:10.1021/la026127eGarcía-Lodeiro, I., Fernández-Jiménez, A., Blanco, M. T., & Palomo, A. (2007). FTIR study of the sol–gel synthesis of cementitious gels: C–S–H and N–A–S–H. Journal of Sol-Gel Science and Technology, 45(1), 63-72. doi:10.1007/s10971-007-1643-6Barbosa VFF. Sintese e caracterização de polissialatos (Synthesis and characterization of polysialates) [PhD thesis] (in Portuguese). Instituto Militar de Engenharia. Rio de Janeiro - Brazil. 190 p. 1999.Bernal, S. A., Rodríguez, E. D., Mejía de Gutiérrez, R., Gordillo, M., & Provis, J. L. (2011). Mechanical and thermal characterisation of geopolymers based on silicate-activated metakaolin/slag blends. Journal of Materials Science, 46(16), 5477-5486. doi:10.1007/s10853-011-5490-zBoccaccini, A. R., Bücker, M., Bossert, J., & Marszalek, K. (1997). Glass matrix composites from coal flyash and waste glass. Waste Management, 17(1), 39-45. doi:10.1016/s0956-053x(97)00035-4Kourti, I., Rani, D. A., Deegan, D., Boccaccini, A. R., & Cheeseman, C. R. (2010). Production of geopolymers using glass produced from DC plasma treatment of air pollution control (APC) residues. Journal of Hazardous Materials, 176(1-3), 704-709. doi:10.1016/j.jhazmat.2009.11.089Lampris, C., Lupo, R., & Cheeseman, C. R. (2009). Geopolymerisation of silt generated from construction and demolition waste washing plants. Waste Management, 29(1), 368-373. doi:10.1016/j.wasman.2008.04.007Wu, H.-C., & Sun, P. (2007). New building materials from fly ash-based lightweight inorganic polymer. Construction and Building Materials, 21(1), 211-217. doi:10.1016/j.conbuildmat.2005.06.052Kourti, I., Amutha Rani, D., Boccaccini, A. R., & Cheeseman, C. R. (2011). Geopolymers from DC Plasma–Treated Air Pollution Control Residues, Metakaolin, and Granulated Blast Furnace Slag. Journal of Materials in Civil Engineering, 23(6), 735-740. doi:10.1061/(asce)mt.1943-5533.000017

Updating known distribution models for forecasting climate change impact on endangered species

To plan endangered species conservation and to design adequate management programmes, it is necessary to predict their distributional response to climate change, especially under the current situation of rapid change. However, these predictions are customarily done by relating de novo the distribution of the species with climatic conditions with no regard of previously available knowledge about the factors affecting the species distribution. We propose to take advantage of known species distribution models, but proceeding to update them with the variables yielded by climatic models before projecting them to the future. To exemplify our proposal, the availability of suitable habitat across Spain for the endangered Bonelli’s Eagle (Aquila fasciata) was modelled by updating a pre-existing model based on current climate and topography to a combination of different general circulation models and Special Report on Emissions Scenarios. Our results suggested that the main threat for this endangered species would not be climate change, since all forecasting models show that its distribution will be maintained and increased in mainland Spain for all the XXI century. We remark on the importance of linking conservation biology with distribution modelling by updating existing models, frequently available for endangered species, considering all the known factors conditioning the species’ distribution, instead of building new models that are based on climate change variables only.Ministerio de Ciencia e Innovación and FEDER (project CGL2009-11316/BOS

A review of assessment methods for river hydromorphology

The work leading to this paper has received funding for the EU’s FP7 under Grant Agreement No. 282656 (REFORM

Circulating MicroRNA-122 Is Associated With the Risk of New-Onset Metabolic Syndrome and Type 2 Diabetes

MicroRNA-122 (miR-122) is abundant in the liver and involved in lipid homeostasis, but its relevance to the long-term risk of developing metabolic disorders is unknown. We therefore measured circulating miR-122 in the prospective population-based Bruneck Study (n = 810; survey year 1995). Circulating miR-122 was associated with prevalent insulin resistance, obesity, metabolic syndrome, type 2 diabetes, and an adverse lipid profile. Among 92 plasma proteins and 135 lipid subspecies quantified with mass spectrometry, it correlated inversely with zinc-α-2-glycoprotein and positively with afamin, complement factor H, VLDL-associated apolipoproteins, and lipid subspecies containing monounsaturated and saturated fatty acids. Proteomics analysis of livers from antagomiR-122–treated mice revealed novel regulators of hepatic lipid metabolism that are responsive to miR-122 inhibition. In the Anglo-Scandinavian Cardiac Outcomes Trial (ASCOT, n = 155), 12-month atorvastatin reduced circulating miR-122. A similar response to atorvastatin was observed in mice and cultured murine hepatocytes. Over up to 15 years of follow-up in the Bruneck Study, multivariable adjusted risk ratios per one-SD higher log miR-122 were 1.60 (95% CI 1.30–1.96; P < 0.001) for metabolic syndrome and 1.37 (1.03–1.82; P = 0.021) for type 2 diabetes. In conclusion, circulating miR-122 is strongly associated with the risk of developing metabolic syndrome and type 2 diabetes in the general population

The host metabolite D-serine contributes to bacterial niche specificity through gene selection

Escherichia coli comprise a diverse array of both commensals and niche-specific pathotypes. The ability to cause disease results from both carriage of specific virulence factors and regulatory control of these via environmental stimuli. Moreover, host metabolites further refine the response of bacteria to their environment and can dramatically affect the outcome of the host–pathogen interaction. Here, we demonstrate that the host metabolite, D-serine, selectively affects gene expression in E. coli O157:H7. Transcriptomic profiling showed exposure to D-serine results in activation of the SOS response and suppresses expression of the Type 3 Secretion System (T3SS) used to attach to host cells. We also show that concurrent carriage of both the D-serine tolerance locus (dsdCXA) and the locus of enterocyte effacement pathogenicity island encoding a T3SS is extremely rare, a genotype that we attribute to an ‘evolutionary incompatibility’ between the two loci. This study demonstrates the importance of co-operation between both core and pathogenic genetic elements in defining niche specificity