Cost of Generalised HMC Algorithms for Free Field Theory

We study analytically the computational cost of the Generalised Hybrid Monte Carlo (GHMC) algorithm for free field theory. We calculate the autocorrelation functions of operators quadratic in the fields, and optimise the GHMC momentum mixing angle, the trajectory length, and the integration stepsize. We show that long trajectories are optimal for GHMC, and that standard HMC is much more efficient than algorithms based on the Second Order Langevin (L2MC) or Kramers Equation. We show that contrary to naive expectations HMC and L2MC have the same volume dependence, but their dynamical critical exponents are z=1 and z=3/2 respectively.Comment: LATTICE99(Algorithms and Machines) - 3 pages, 1 PostScript figur

Tuning the generalized Hybrid Monte Carlo algorithm

We discuss the analytic computation of autocorrelation functions for the generalized Hybrid Monte Carlo algorithm applied to free field theory and compare the results with numerical results for the $O(4)$ spin model in two dimensions. We explain how the dynamical critical exponent $z$ for some operators may be reduced from two to one by tuning the amount of randomness introduced by the updating procedure, and why critical slowing down is not a problem for other operators.Comment: 4 pages, to be published in the Proceedings of Lattice 95, uuencoded PostScript fil

Epidemiology of ticks and tick-borne diseases in eastern, central and southern Africa. Proceedings of a workshop

The first part of this report comprises country reports that deals with epidemiology of ticks and tick-borne diseases in Ethiopia, Kenya, Malawi, Mozambique, South Africa, Swaziland, Tanzania, Uganda, Zambia and Zimbabwe. The second part of the report covers topics on assessing the efficacy of immunization against tick-borne diseases, evaluating delivery systems for the control of tick-borne diseases and measuring the impact of immunization on livestock productivity. The paper ends with a discussion on coordination, collaboration and planning

Cost efficient narrow linewidth laser transmitter for coherent detection

Authors present a cost efficient narrow linewidth laser transmitter for future coherent detection systems. The spectral purity of the laser allows the phase modulation of data signals at bit rates as low as 155 Mb/s

Fast switching tunable laser sources for wavelength division multiplexing in passive optical access networks

Tunable laser structures with nanosecond switching time between wavelength channels and low-power injection locking are demonstrated on a low-cost platform. These lasers are suitable as source or slave lasers in WDM passive optical access networks

Cost of the Generalised Hybrid Monte Carlo Algorithm for Free Field Theory

We study analytically the computational cost of the Generalised Hybrid Monte Carlo (GHMC) algorithm for free field theory. We calculate the Metropolis acceptance probability for leapfrog and higher-order discretisations of the Molecular Dynamics (MD) equations of motion. We show how to calculate autocorrelation functions of arbitrary polynomial operators, and use these to optimise the GHMC momentum mixing angle, the trajectory length, and the integration stepsize for the special cases of linear and quadratic operators. We show that long trajectories are optimal for GHMC, and that standard HMC is more efficient than algorithms based on Second Order Langevin Monte Carlo (L2MC), sometimes known as Kramers Equation. We show that contrary to naive expectations HMC and L2MC have the same volume dependence, but their dynamical critical exponents are z = 1 and z = 3/2 respectively.Comment: 54 pages, 3 figure

Bear presence attracts avian predators but does not impact lesser snow goose daily nest attendance

The presence of foraging bears in Arctic breeding bird colonies has been increasingly reported in the literature, and these may constitute disturbance events which cause incubating birds to leave their nest. Avian predators may associate with bears during such events, likely to capitalize on unattended nests in the presence of bears. Here, we estimated changes in daily nest attendance of lesser snow geese Anser caerulescens caerulescens in the presence of foraging bears, and estimated the association between foraging bears and avian predators. We predicted decreased nest attendance by geese on days with bears, and close associations between avian predators and bears. We monitored snow goose nests with cameras from 2013 to 2018 to assess nest attendance behaviours on days when bears were in the colony compared to control days without bears. When bears were present in colonies, we estimated the probability of avian predator occurrence compared to control periods. When controlling for day of incubation and camera placement types, we found no significant effects of bears on daily nest attendance behaviours of snow geese (n = 85). We found a significantly higher probability of observing avian predators when bears were present (0.72) compared to control periods without bears (0.11). We show that snow geese do not alter daily nest attendance in the presence of foraging bears, and suggest this is due to the presence of avian predators

Consequences of Two Different Amino-Acid Substitutions at the Same Codon in KRT14 Indicate Definitive Roles of Structural Distortion in Epidermolysis Bullosa Simplex Pathogenesis

Numerous inherited diseases develop due to missense mutations, leading to an amino-acid substitution. Whether an amino-acid change is pathogenic depends on the level of deleterious effects caused by the amino-acid alteration. We show an example of different structural and phenotypic consequences caused by two individual amino-acid changes at the same position. Epidermolysis bullosa simplex (EBS) is a genodermatosis resulting from KRT5 or KRT14 mutations. Mutation analysis of an EBS family revealed that affected individuals were heterozygous for a, to our knowledge, previously unreported mutation of c.1237G>C (p.Ala413Pro) in KRT14. Interestingly, 2 of 100 unrelated normal controls were heterozygous, and 1 of the 100 was homozygous for a different mutation in this position, c.1237G>A (p.Ala413Thr). In silico modeling of the protein demonstrated deleterious structural effects from proline substitution but not from threonine substitution. In vitro transfection studies revealed a significantly larger number of keratin-clumped cells in HaCaT cells transfected with mutant KRT14 complementary DNA (cDNA) harboring p.Ala413Pro than those transfected with wild-type KRT14 cDNA or mutant KRT14 cDNA harboring p.Ala413Thr. These results show that changes in two distinct amino acids at a locus are destined to elicit different phenotypes due to the degree of structural distortion resulting from the amino-acid alterations

Activation of relaxin family receptor 1 from different mammalian species by relaxin peptide and small-molecule agonist ML290

Relaxin peptide (RLN), which signals through the relaxin family peptide 1 (RXFP1) GPCR receptor, has shown therapeutic effects in an acute heart failure clinical trial. We have identified a small-molecule agonist of human RXFP1, ML290; however, it does not activate the mouse receptor. To find a suitable animal model for ML290 testing and to gain mechanistic insights into the interaction of various ligands with RXFP1, we have cloned rhesus macaque, pig, rabbit, and guinea pig RXFP1s and analyzed their activation by RLN and ML290. HEK293T cells expressing macaque or pig RXFP1 responded to relaxin and ML290 treatment as measured by an increase of cAMP production. Guinea pig RXFP1 responded to relaxin but had very low response to ML290 treatment only at highest concentrations used. The rabbit RXFP1 amino acid sequence was the most divergent, with a number of unique substitutions within the ectodomain and the seven-transmembrane domain (7TM). Two splice variants of rabbit RXFP1 derived through alternative splicing of the fourth exon were identified. In contrast to the other species, rabbit RXFP1s were activated by ML290, but not with human, pig, mouse, or rabbit RLNs. Using FLAG-tagged constructs, we have shown that both rabbit RXFP1 variants are expressed on the cell surface. No binding of human Eu-labeled RLN to rabbit RXFP1 was detected, suggesting that in this species, RXFP1 might be non-functional. We used chimeric rabbit–human and guinea pig–human constructs to identify regions important for RLN or ML290 receptor activation. Chimeras with the human ectodomain and rabbit 7TM domain were activated by RLN, whereas substitution of part of the guinea pig 7TM domain with the human sequence only partially restored ML290 activation, confirming the allosteric mode of action for the two ligands. Our data demonstrate that macaque and pig models can be used for ML290 testing