In HspA from Helicobacter pylori vicinal disulfide bridges are a key determinant of domain B structure

Helicobacter pylori produces a heat shock protein A (HspA) that is unique to this bacteria. While the first 91 residues (domain A) of the protein are similar to GroES, the last 26 (domain B) are unique to HspA. Domain B contains eight histidines and four cysteines and was suggested to bind nickel. We have produced HspA and two mutants: Cys94Ala and Cys94Ala/Cys111Ala and identified the disulfide bridge pattern of the protein. We found that the cysteines are engaged in three disulfide bonds: Cys51/Cys53, Cys94/Cys111 and Cys95/Cys112 that result in a unique closed loop structure for the domain

Predatory Functional Morphology in Raptors: Interdigital Variation in Talon Size Is Related to Prey Restraint and Immobilisation Technique

Despite the ubiquity of raptors in terrestrial ecosystems, many aspects of their predatory behaviour remain poorly understood. Surprisingly little is known about the morphology of raptor talons and how they are employed during feeding behaviour. Talon size variation among digits can be used to distinguish families of raptors and is related to different techniques of prey restraint and immobilisation. The hypertrophied talons on digits (D) I and II in Accipitridae have evolved primarily to restrain large struggling prey while they are immobilised by dismemberment. Falconidae have only modest talons on each digit and only slightly enlarged D-I and II. For immobilisation, Falconini rely more strongly on strike impact and breaking the necks of their prey, having evolved a ‘tooth’ on the beak to aid in doing so. Pandionidae have enlarged, highly recurved talons on each digit, an adaptation for piscivory, convergently seen to a lesser extent in fishing eagles. Strigiformes bear enlarged talons with comparatively low curvature on each digit, part of a suite of adaptations to increase constriction efficiency by maximising grip strength, indicative of specialisation on small prey. Restraint and immobilisation strategy change as prey increase in size. Small prey are restrained by containment within the foot and immobilised by constriction and beak attacks. Large prey are restrained by pinning under the bodyweight of the raptor, maintaining grip with the talons, and immobilised by dismemberment (Accipitridae), or severing the spinal cord (Falconini). Within all raptors, physical attributes of the feet trade off against each other to attain great strength, but it is the variable means by which this is achieved that distinguishes them ecologically. Our findings show that interdigital talon morphology varies consistently among raptor families, and that this is directly correlative with variation in their typical prey capture and restraint strategy

First record and otolith morphometric description of an adult lightfish, Ichthyococcus ovatus (Actinopterygii: Stomiiformes: Phosichthyidae), caught in the Strait of Sicily (central Mediterranean Sea)

On July 2018, one specimen ofIchthyococcus ovatus (Cocco, 1838) was caught in the Strait of Sicily during the International Bottom Trawl Survey in the Mediterranean (MEDITS). The adult I. ovatus measured 49 mm in total length and weighed 1.44 g. In this context, the presently reported study constitutes the first and deepest record of an adult of I. ovatus as well as the morphometric description of its sagittal otoliths. In addition, we provide an age estimation as well as an update of the geographical distribution of this bathypelagic species around the Mediterranean Sea. Based on the growth increments of sagittal otoliths, the estimated age was five years. Specifically, the otolith from the presently reported specimen of I. ovatus tended to be elliptic in shape related to aspect ratio and high rectangularity while circularity showed high complexity of otolith contour complexity. The absence of economic val-ue of rarely reported species may underestimate their abundance. Therefore, more studies and research surveys would be necessary to fill the information gap on the biology of these deep-water species

Batoid abundances, spatial distribution, and life history traits in the strait of sicily (Central mediterranean sea): Bridging a knowledge gap through three decades of survey

Batoid species play a key role in marine ecosystems but unfortunately they have globally declined over the last decades. Given the paucity of information, abundance data and the main life history traits for batoids, obtained through about three decades of bottom trawl surveys, are presented and discussed. The surveys were carried out in two areas of the Central Mediterranean (South of Sicily and Malta Island), in a timeframe ranging from 1990 to 2018. Excluding some batoids, the abundance trends were stable or increasing. Only R. clavata, R. miraletus, and D. oxyrinchus showed occurrence and abundance indexes notable enough to carry out more detailed analysis. In particular, spatial distribution analysis of these species highlighted the presence of two main hotspots in Sicilian waters whereas they seem more widespread in Malta. The lengths at first maturity (L50) were 695 and 860, 635 and 574, and 364 and 349 mm total length (TL), respectively, for females and males of D. oxyrinchus, R. clavata, and R. miraletus. The asymptotic lengths (L∞) and the curvature coefficients (K) were 1365 and 1240 (K = 0.11 and 0.26), 1260 and 1100 (K = 0.16 and 0.26), and 840 and 800 mm TL (K = 0.36 and 0.41), respectively, for females and males of D. oxyrinchus, R. clavata, and R. miraletus. The lack of detailed quantitative historical information on batoids of Sicily and Malta does not allow to analytically judge the current status of the stocks, although the higher abundance of some species within Malta raises some concern for the Sicilian counterpart. In conclusion, suitable actions to protect batoids in the investigated area are recommended

Analysis and Comparison of Features and Algorithms to Classify Shoulder Movements from sEMG Signals

Shoulder movements are not considered for electromyography-based pattern classification control, due to the difficulty to manufacture three-degrees-of-freedom shoulder prostheses. This paper aims at exploring the feasibility of classifying up to nine shoulder movements by processing surface electromyography signals from eight trunk muscles. Experimenting with different pattern recognition methods, two classifiers were developed, considering six different combinations of window sizes and increments, and three feature sets for each channel. Applying linear discriminant analysis the best performance was obtained on a window length of 500 ms associated to temporal increments of 62 ms. This setting yielded a 100% accuracy for recognizing four movements, and progressively degraded to 92% for nine movements. Using neural networks, higher accuracy was obtained in particular in the 9-class problem. Finally, the signals from the eight channels were analyzed in order to check the possibility to reduce the number of acquisition channels

Towards a standardization of medits benthos processing: some proposal for a common protocol

The Technical Report summarizes experiences gathered, since 2004, in sampling and processing procedures developed at CNR of Mazara del Vallo Laboratory for benthos studies including MEDITS program. Some critical issues faced during sampling and processing are presented. The work could contribute to the discussion for achieving agreed procedure of a standardized protocol for analyses on benthic organisms

Call me by my name: unravelling the taxonomy of the gulper shark genus Centrophorus in the Mediterranean Sea through an integrated taxonomic approach

The current shift of fishery efforts towards the deep sea is raising concern about the vulnerability of deep-water sharks, which are often poorly studied and characterized by problematic taxonomy. For instance, in the Mediterranean Sea the taxonomy of genus Centrophorus has not been clearly unravelled yet. Since proper identification of the species is fundamental for their correct assessment and management, this study aims at clarifying the taxonomy of this genus in the Mediterranean Basin through an integrated taxonomic approach. We analysed a total of 281 gulper sharks (Centrophorus spp.) collected from various Mediterranean, Atlantic and Indian Ocean waters. Molecular data obtained from cytochrome c oxidase subunit I (COI), 16S ribosomal RNA (16S), NADH dehydrogenase subunit 2 (ND2) and a portion of a nuclear 28S ribosomal DNA gene region (28S) have highlighted the presence of a unique mitochondrial clade in the Mediterranean Sea. The morphometric results confirmed these findings, supporting the presence of a unique and distinct morphological group comprising all Mediterranean individuals. The data strongly indicate the occurrence of a single Centrophorus species in the Mediterranean, ascribable to C. cf. uyato, and suggest the need for a revision of the systematics of the genus in the area.En prens

How does climate change affect a fishable resource? The case of the royal sea cucumber (Parastichopus regalis) in the central Mediterranean Sea

Holothurians or sea cucumbers are key organisms in marine ecosystems that, by ingesting large quantities of sediments, provide important ecosystem services. Among them, Parastichopus regalis (Cuvier, 1817) is one of the living sea cucumbers in the Mediterranean actively fished for human consumption mainly in Spain, where it is considered a gastronomic delicacy. In the Strait of Sicily (central Mediterranean Sea), this species is not exploited for commercial use even if it is used as bait by longline fishery. P. regalis is frequently caught by bottom trawling and discarded at sea by fishers after catch, and because of its capacity to resist air exposition (at least in cold months), it is reasonable to consider that it is not affected by fishing mortality. Having observed a significant decrease in abundance since 2018, the possible effects of some ecological factors related to current climate change (i.e., temperature and pH) were sought. Generalized additive models (GAMs) were applied to investigate the relationship among the abundance of P. regalis and environmental variables and fishing effort. Long time series of P. regalis densities (2008-2021) were extracted from the MEDITS bottom trawling survey and modeled as function of environmental parameters (i.e., salinity, dissolved oxygen, ammonium, pH, and chlorophyll alpha) and fishing effort (i.e., total number of fishing days per gross tonnage). Our results showed that this species prefers the soft bottoms (50-200 m) of the Adventure Bank and Malta Plateau, and its distribution changed over time with a slight deepening and a rarefaction of spatial distribution starting from 2011 and 2017, respectively. In addition, a positive relationship with pH concentration in surface waters during the larval dispersal phase (3-year lag before the survey) and nutrient concentration at sea bottom (1-year lag) has been found, suggesting that this species is sensitive to climate change and food availability. This study adds new knowledge about the population dynamics of an unexploited stock of P. regalis under fishing impact and environmental under climate change in fisheries management

an analysis of recent research on venture capital networks

Purpose – this paper examines recent trends in venture capital network research. Network analysis is a useful approach for analyzing inter-organizational networks, especially for venture capitalists, which are characterized by plenty of connections. Although important steps ahead have been made, several research questions are still unanswered. Research methodology – this brief review analyses deeply three papers which are representative of the novel scientific literature in this field. Scrutinizing these works, I identify their points of strength and weaknesses, in order to understand how to pave the way for further research. Findings – this paper shows that the study of network weak ties and the role of risk management strategies are promising areas for pushing the frontiers of research on venture capital networks. Research limitations – although less recent papers are not considered in this analysis, the in-depth discussion of the latest research provides interesting insights and advice for scholars willing to do research on this field of studies. Practical implications – extending our knowledge on this topic is crucial for understanding the best strategic decisions venture capitalists should take when operating within an inter-organizational network. Originality/Value – this paper critically analyses steam of literature which is important from both scientific and managerial viewpoints. Furthermore, it poses questions to be addressed by future research

Anatomy and Taxonomic Status of the Chasmosaurine Ceratopsid Nedoceratops hatcheri from the Upper Cretaceous Lance Formation of Wyoming, U.S.A

Background: The validity of Nedoceratops hatcheri, a chasmosaurine ceratopsid dinosaur known from a single skull recovered in the Lance Formation of eastern Wyoming, U.S.A., has been debated for over a century. Some have argued that the taxon is an aberrant Triceratops, and most recently it was proposed that N. hatcheri represents an intermediate ontogenetic stage between ‘‘young adult’ ’ and ‘‘old adult’ ’ forms of a single taxon previously split into Triceratops and Torosaurus. Methodology/Principal Findings: The holotype skull of Nedoceratops hatcheri was reexamined in order to map reconstructed areas and compare the specimen with other ceratopsids. Although squamosal fenestrae are almost certainly not of taxonomic significance, some other features are unique to N. hatcheri. These include a nasal lacking a recognizable horn, nearly vertical postorbital horncores, and relatively small parietal fenestrae. Thus, N. hatcheri is tentatively considered valid, and closely related to Triceratops spp. The holotype of N. hatcheri probably represents an ‘‘old adult,’ ’ based upon bone surface texture and the shape of the horns and epiossifications on the frill. In this study, Torosaurus is maintained as a genus distinct from Triceratops and Nedoceratops. Synonymy of the three genera as ontogenetic stages of a single taxon would require cranial changes otherwise unknown in ceratopsids, including additions of ossifications to the frill and repeated alternation of bone surface texture between juvenile and adult morphotypes