The Intra-Dependence of Viruses and the Holobiont.

Animals live in symbiosis with the microorganisms surrounding them. This symbiosis is necessary for animal health, as a symbiotic breakdown can lead to a disease state. The functional symbiosis between the host, and associated prokaryotes, eukaryotes, and viruses in the context of an environment is the holobiont. Deciphering these holobiont associations has proven to be both difficult and controversial. In particular, holobiont association with viruses has been of debate even though these interactions have been occurring since cellular life began. The controversy stems from the idea that all viruses are parasitic, yet their associations can also be beneficial. To determine viral involvement within the holobiont, it is necessary to identify and elucidate the function of viral populations in symbiosis with the host. Viral metagenome analyses identify the communities of eukaryotic and prokaryotic viruses that functionally associate within a holobiont. Similarly, analyses of the host in response to viral presence determine how these interactions are maintained. Combined analyses reveal how viruses interact within the holobiont and how viral symbiotic cooperation occurs. To understand how the holobiont serves as a functional unit, one must consider viruses as an integral part of disease, development, and evolution

On the Structure of Solutions of Computable Real Functions

The relationship between the structure of a domain and the complexity of computing over that domain is a fundamental question of computer science. This paper studies how the structure of the real numbers constrains the behavior of computable real functions. In particular, we uncover a close correlation between the structure of the zero set of a computable real function, and the complexity of the zeros. We show that computable real functions with hard solutions perforce have many solutions. Furthermore, as the complexity of solutions increases, the number of solutions increases. We prove that computable real functions with nonrecursive, nonarithmetical, or random zeros have solution sets that are, respectively, infinite,“˜ uncountable, or of positive measure. In addition, we show that the computational complexity of the zero set of a computable real function is limited by its topological complexity. These results suggest an emerging paradigm-the inability of machines to name complex strings can serve as the basis of powerful proof techniques in computational complexity theory

Microbial ecology in Hydra: why viruses matter.

While largely studied because of their harmful effects on human health, there is growing appreciation that viruses are also important members of the animal holobiont. This review highlights recent findings on viruses associated with Hydra and related Cnidaria. These early evolutionary diverging animals not only select their bacterial communities but also select for viral communities in a species-specific manner. The majority of the viruses associating with these animals are bacteriophages. We demonstrate that the animal host and its virome have evolved into a homeostatic, symbiotic relationship and propose that viruses are an important part of the Hydra holobiont by controlling the species-specific microbiome. We conclude that beneficial virus-bacterial-host interactions should be considered as an integral part of animal development and evolution

Novel Polypyridyl Ruthenium(II) Complexes Containing Oxalamidines as Ligands.

The complexes [Ru(bpy)2(H2TPOA)](PF6)2 ⋅ 4H2O, (1); [Ru(Me-bpy)2(H2TPOA)](PF6)2 ⋅ 2H2O, (2); [Ru(bpy)2(H2TTOA)](PF6)2 ⋅ 2H2O, (3); [Ru(Me-bpy)2(H2TTOA)](PF6)2 ⋅ 2H2O, (4) and {[Ru(bpy)2]2(TPOA)}(PF6)2 ⋅ 2H2O, (5) (where bpy is 2,2´bipyridine; Me-bpy is 4,4´- dimethyl-2,2´-bipyridine; H2TPOA is N, N´, N´´, N´´´- tetraphenyloxalamidine; H2TTOA is N, N´, N´´, N´´´- tetratolyloxalamidine) have been synthesized and characterized by 1H-NMR, FAB-MS, infrared spectroscopy and elemental analysis. The X-ray investigation shows the coordination of the still protonated oxalamidine moiety via the 1,2−diimine unit. The dimeric compound (5) could be separated in its diastereoisomers (5´) and (5´´) by repeated recrystallisation. The diastereomeric forms exhibit different 1H-NMR spectra and slightly shifted electronic spectra. Compared with the model compound [Ru(bpy)3]2+, the absorption maxima of (1)–(5) are shifted to lower energies. The mononuclear complexes show Ru(III/II)- couples at about 0.9 V vs SCE, while for the dinuclear complex two well defined metal based redox couples are observed at 0.45 and 0.65 V indicating substantial interaction between the two metal centres

Cnidofest 2018: the future is bright for cnidarian research.

The 2018 Cnidarian Model Systems Meeting (Cnidofest) was held September 6-9th at the University of Florida Whitney Laboratory for Marine Bioscience in St. Augustine, FL. Cnidofest 2018, which built upon the momentum of Hydroidfest 2016, brought together research communities working on a broad spectrum of cnidarian organisms from North America and around the world. Meeting talks covered diverse aspects of cnidarian biology, with sessions focused on genomics, development, neurobiology, immunology, symbiosis, ecology, and evolution. In addition to interesting biology, Cnidofest also emphasized the advancement of modern research techniques. Invited technology speakers showcased the power of microfluidics and single-cell transcriptomics and demonstrated their application in cnidarian models. In this report, we provide an overview of the exciting research that was presented at the meeting and discuss opportunities for future research

Evolution of TNF-Induced Apoptosis Reveals 550 My of Functional Conservation

The Precambrian explosion led to the rapid appearance of most major animal phyla alive today. It has been argued that the complexity of life has steadily increased since that event. Here we challenge this hypothesis through the characterization of apoptosis in reef-building corals, representatives of some of the earliest animals. Bioinformatic analysis reveals that all of the major components of the death receptor pathway are present in coral with high-predicted structural conservation with Homo sapiens. The TNF receptor-ligand superfamilies (TNFRSF/TNFSF) are central mediators of the death receptor pathway, and the predicted proteome of Acropora digitifera contains more putative coral TNFRSF members than any organism described thus far, including humans. This high abundance of TNFRSF members, as well as the predicted structural conservation of other death receptor signaling proteins, led us to wonder what would happen if corals were exposed to a member of the human TNFSF (HuTNFα). HuTNFα was found to bind directly to coral cells, increase caspase activity, cause apoptotic blebbing and cell death, and finally induce coral bleaching. Next, immortalized human T cells (Jurkats) expressing a functional death receptor pathway (WT) and a corresponding Fas-associated death domain protein (FADD) KO cell line were exposed to a coral TNFSF member (AdTNF1) identified and purified here. AdTNF1 treatment resulted in significantly higher cell death (P \u3c 0.0001) in WT Jurkats compared with the corresponding FADD KO, demonstrating that coral AdTNF1 activates the H. sapiens death receptor pathway. Taken together, these data show remarkable conservation of the TNF-induced apoptotic response representing 550 My of functional conservation

Analysis of the U L3-edge X-ray absorption spectra in UO2 using molecular dynamics simulations

This work was supported by a grant from the Swiss National Supercomputing Centre (CSCS) under the project ID s444. The resource allocation within the PSI share at CSCS and on the PSI compute cluster Merlin4 is also acknowledged. D. B. is grateful for a fellowship within the Sciex-NMS programme. A. K. was supported by Latvian Science Council Grant no. 187/2012.Uranium L3-edge X-ray absorption spectroscopy was used to study the atomic structure of uranium dioxide (UO2). The extended X-ray absorption fine structure (EXAFS) was interpreted within the ab initio multiple-scattering approach combined with classical molecular dynamics to account for thermal disorder effects. Nine force-field models were validated, and the role of multiple-scattering contributions was evaluated.Swiss National Supercomputing Centre project ID s444; Latvian Science Council grant no. 187/2012; Institute of Solid State Physics, University of Latvia as the Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART

Analysis of the U L3-edge X-ray absorption spectra in UO2 using molecular dynamics simulations

This work was supported by a grant from the Swiss National Supercomputing Centre (CSCS) under the project ID s444. The resource allocation within the PSI share at CSCS and on the PSI compute cluster Merlin4 is also acknowledged. D. B. is grateful for a fellowship within the Sciex-NMS programme. A. K. was supported by Latvian Science Council Grant no. 187/2012.Uranium L3-edge X-ray absorption spectroscopy was used to study the atomic structure of uranium dioxide (UO2). The extended X-ray absorption fine structure (EXAFS) was interpreted within the ab initio multiple-scattering approach combined with classical molecular dynamics to account for thermal disorder effects. Nine force-field models were validated, and the role of multiple-scattering contributions was evaluated.Swiss National Supercomputing Centre project ID s444; Latvian Science Council grant no. 187/2012; Institute of Solid State Physics, University of Latvia as the Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART