9,154 research outputs found
Branching, Capping, and Severing in Dynamic Actin Structures
Branched actin networks at the leading edge of a crawling cell evolve via
protein-regulated processes such as polymerization, depolymerization, capping,
branching, and severing. A formulation of these processes is presented and
analyzed to study steady-state network morphology. In bulk, we identify several
scaling regimes in severing and branching protein concentrations and find that
the coupling between severing and branching is optimally exploited for
conditions {\it in vivo}. Near the leading edge, we find qualitative agreement
with the {\it in vivo} morphology.Comment: 4 pages, 2 figure
Modeling of Covalent Bonding in Solids by Inversion of Cohesive Energy Curves
We provide a systematic test of empirical theories of covalent bonding in
solids using an exact procedure to invert ab initio cohesive energy curves. By
considering multiple structures of the same material, it is possible for the
first time to test competing angular functions, expose inconsistencies in the
basic assumption of a cluster expansion, and extract general features of
covalent bonding. We test our methods on silicon, and provide the direct
evidence that the Tersoff-type bond order formalism correctly describes
coordination dependence. For bond-bending forces, we obtain skewed angular
functions that favor small angles, unlike existing models. As a
proof-of-principle demonstration, we derive a Si interatomic potential which
exhibits comparable accuracy to existing models.Comment: 4 pages revtex (twocolumn, psfig), 3 figures. Title and some wording
(but no content) changed since original submission on 24 April 199
A New Multi-Resource cumulatives Constraint with Negative Heights
This paper presents a new cumulatives constraint which generalizes the original cumulative constraint in different ways. The two most important aspects consist in permitting multiple cumulative resources as well as negative heights for the resource consumption of the tasks. This allows modeling in an easy way new scheduling and planning problems. The introduction of negative heights has forced us to come up with new propagation algorithms and to revisit existing ones. The first propagation algorithm is derived from an idea called sweep which is extensively used in computational geometry; the second algorithm is based on a combination of sweep and constructive disjunction, while the last is a generalization of task intervals to this new context. A real-life timetabling problem originally motivated this constraint which was implemented within the SICStus finite domain solver and evaluated against different problem patterns
Parallel Mapper
The construction of Mapper has emerged in the last decade as a powerful and
effective topological data analysis tool that approximates and generalizes
other topological summaries, such as the Reeb graph, the contour tree, split,
and joint trees. In this paper, we study the parallel analysis of the
construction of Mapper. We give a provably correct parallel algorithm to
execute Mapper on multiple processors and discuss the performance results that
compare our approach to a reference sequential Mapper implementation. We report
the performance experiments that demonstrate the efficiency of our method
Order-N Density-Matrix Electronic-Structure Method for General Potentials
A new order-N method for calculating the electronic structure of general
(non-tight-binding) potentials is presented. The method uses a combination of
the ``purification''-based approaches used by Li, Nunes and Vanderbilt, and
Daw, and a representation of the density matrix based on ``travelling basis
orbitals''. The method is applied to several one-dimensional examples,
including the free electron gas, the ``Morse'' bound-state potential, a
discontinuous potential that mimics an interface, and an oscillatory potential
that mimics a semiconductor. The method is found to contain Friedel
oscillations, quantization of charge in bound states, and band gap formation.
Quantitatively accurate agreement with exact results is found in most cases.
Possible advantages with regard to treating electron-electron interactions and
arbitrary boundary conditions are discussed.Comment: 13 pages, REVTEX, 7 postscript figures (not quite perfect
Giant Monopole Resonances and nuclear incompressibilities studied for the zero-range and separable pairing interactions
Background: Following the 2007 precise measurements of monopole strengths in
tin isotopes, there has been a continuous theoretical effort to obtain a
precise description of the experimental results. Up to now, there is no
satisfactory explanation of why the tin nuclei appear to be significantly
softer than 208Pb.
Purpose: We determine the influence of finite-range and separable pairing
interactions on monopole strength functions in semi-magic nuclei.
Methods: We employ self-consistently the Quasiparticle Random Phase
Approximation on top of spherical Hartree-Fock-Bogolyubov solutions. We use the
Arnoldi method to solve the linear-response problem with pairing.
Results: We found that the difference between centroids of Giant Monopole
Resonances measured in lead and tin (about 1 MeV) always turns out to be
overestimated by about 100%. We also found that the volume incompressibility,
obtained by adjusting the liquid-drop expression to microscopic results, is
significantly larger than the infinite-matter incompressibility.
Conclusions: The zero-range and separable pairing forces cannot induce
modifications of monopole strength functions in tin to match experimental data.Comment: 11 RevTeX pages, 16 figures, 1 table, extended versio
Collective vibrational states with fast iterative QRPA method
An iterative method we previously proposed to compute nuclear strength
functions is developed to allow it to accurately calculate properties of
individual nuclear states. The approach is based on the
quasi-particle-random-phase approximation (QRPA) and uses an iterative
non-hermitian Arnoldi diagonalization method where the QRPA matrix does not
have to be explicitly calculated and stored. The method gives substantial
advantages over conventional QRPA calculations with regards to the
computational cost. The method is used to calculate excitation energies and
decay rates of the lowest lying 2+ and 3- states in Pb, Sn, Ni and Ca isotopes
using three different Skyrme interactions and a separable gaussian pairing
force.Comment: 10 pages, 11 figure
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