Polymorphisms in the bradykinin B2 receptor gene and childhood asthma

Bradykinin has been suggested as one of the key mediators of bronchial asthma. Polymorphisms with a potential functional relevance have been described in the B2 bradykinin receptor gene. Study of these polymorphisms in 77 children with asthma and 73 controls revealed no association. However, when comparing the asthmatics according to their age at onset (before and after age 4), the exon 1 allele BE1-2G was significantly associated with late-onset asthma (p <0.05). Since BE1-2G has previously been shown to lead to a higher transcription rate of the B2 receptor, this result warrants further investigation of the role of bradykinin in conferring susceptibility to pediatric asthma

Thermal equation of state of polarized fermions in one dimension via complex chemical potentials

We present a nonperturbative computation of the equation of state of polarized, attractively interacting, nonrelativistic fermions in one spatial dimension at finite temperature. We show results for the density, spin magnetization, magnetic susceptibility, and Tan's contact. We compare with the second-order virial expansion, a next-to-leading-order lattice perturbation theory calculation, and interpret our results in terms of pairing correlations. Our lattice Monte Carlo calculations implement an imaginary chemical potential difference to avoid the sign problem. The thermodynamic results on the imaginary side are analytically continued to obtain results on the real axis. We focus on an intermediate- to strong-coupling regime, and cover a wide range of temperatures and spin imbalances.Comment: 14 pages, 19 figures; published versio

Renormalization Flow of Axion Electrodynamics

We study the renormalization flow of axion electrodynamics, concentrating on the non-perturbative running of the axion-photon coupling and the mass of the axion (like) particle. Due to a non-renormalization property of the axion-photon vertex, the renormalization flow is controlled by photon and axion anomalous dimensions. As a consequence, momentum-independent axion self-interactions are not induced by photon fluctuations. The non-perturbative flow towards the ultraviolet exhibits a Landau-pole-type behavior, implying that the system has a scale of maximum UV extension and that the renormalized axion-photon coupling in the deep infrared is bounded from above. Even though gauge invariance guarantees that photon fluctuations do not decouple in the infrared, the renormalized couplings remain finite even in the deep infrared and even for massless axions. Within our truncation, we also observe the existence of an exceptional RG trajectory, which is extendable to arbitrarily high scales, without being governed by a UV fixed point.Comment: 12 pages, 4 figure

Inhibition or stimulation of ochratoxin a synthesis on inoculated barley triggered by diffuse coplanar surface barrier discharge plasma

Ochratoxin A (OTA) is one of the most abundant food-contaminating mycotoxins. Besides their high toxicity, mycotoxins are highly stable to physical, chemical or biological detoxification. Therefore, the treatment with cold atmospheric plasma could be one approach to reduce the amount of mycotoxins in different products. The aim of this study was to determine the influence of cold atmospheric plasma on the inactivation of Aspergillus niger and Penicillium verrucosum inoculated on barley and their production of OTA. Inoculated barley was treated with plasma generated by dry air, CO2 or CO2 + O2 for 1 or 3 min and stored for up to two weeks at 9, 25, or 37°C. Three minutes of air plasma treatment effectively significantly reduced the total mold count of both microorganisms by 2.5–3 log cycles. The production of OTA from A. niger was only low, therefore the treatment effect was indistinguishable. The treatment of P. verrucosum on barley after an incubation of five days using a CO2 + O2 plasma resulted in a reduction of the OTA content from 49.0 (untreated) to 27.5 (1 min) and 23.8 ng/g (3 min), respectively. In contrast, CO2 plasma caused an increase of the OTA amount from 49.0 (untreated) to 55.8 (1 min) and 72.9 ng/g (3 min). Finally, the use of air plasma resulted likewise in a decrease of the OTA concentration from 56.9 (untreated) to 25.7 (1 min) and 20.2 ng/g (3 min), respectively. Reducing the incubation time before the treatment to 24 h caused in contrast an increase of the OTA content from 3.1 (untreated) to 29.1 (1 min) and 20.7 ng/g (3 min). Due to the high standard deviation, these changes were not significant, but the tendencies were clearly visible, showing the strong impact of the plasma gas on the OTA production. The results show, that even if the total mold count was reduced, under certain conditions the OTA amount was yet enhanced, probably due to a stress reaction of the mold. Concluding, the plasma gas and incubation conditions have to be considered to allow a successful inactivation of molds and in particular their toxic metabolites

Simultaneous quantitative and allele-specific expression analysis with real competitive PCR

Background: For a diploid organism such as human, the two alleles of a particular gene can be expressed at different levels due to X chromosome inactivation, gene imprinting, different local promoter activity, or mRNA stability. Recently, imbalanced allelic expression was found to be common in human and can follow Mendelian inheritance. Here we present a method that employs real competitive PCR for allele-specific expression analysis. Results: A transcribed mutation such as a single nucleotide polymorphism ( SNP) is used as the marker for allele-specific expression analysis. A synthetic mutation created in the competitor is close to a natural mutation site in the cDNA sequence. PCR is used to amplify the two cDNA sequences from the two alleles and the competitor. A base extension reaction with a mixture of ddNTPs/ dNTP is used to generate three oligonucleotides for the two cDNAs and the competitor. The three products are identified and their ratios are calculated based on their peak areas in the MALDI-TOF mass spectrum. Several examples are given to illustrate how allele-specific gene expression can be applied in different biological studies. Conclusions: This technique can quantify the absolute expression level of each individual allele of a gene with high precision and throughput

RNAi-mediated silencing of MLL-AF9 reveals leukemia-associated downstream targets and processes

Background: The translocation t(9;11)(p22;q23) leading to the leukemogenic fusion gene MLL-AF9 is a frequent translocation in infant acute myeloid leukemia (AML). This study aimed to identify genes and molecular processes downstream of MLL-AF9 (alias MLL-MLLT3) which could assist to develop new targeted therapies for such leukemia with unfavorable prognosis. Methods: In the AML cell line THP1 which harbors this t(9; 11) translocation, endogenous MLL-AF9 was silenced via siRNA while ensuring specificity of the knockdown and its efficiency on functional protein level. Results: The differential gene expression profile was validated for leukemia-association by gene set enrichment analysis of published gene sets from patient studies and MLL-AF9 overexpression studies and revealed 425 differentially expressed genes. Gene ontology analysis was consistent with a more differentiated state of MLL-AF9 depleted cells, with involvement of a wide range of downstream transcriptional regulators and with defined functional processes such as ribosomal biogenesis, chaperone binding, calcium homeostasis and estrogen response. We prioritized 41 gene products as candidate targets including several novel and potentially druggable effectors of MLL-AF9 (AHR, ATP2B2, DRD5, HIPK2, PARP8, ROR2 and TAS1R3). Applying the antagonist SCH39166 against the dopamine receptor DRD5 resulted in reduced leukemic cell characteristics of THP1 cells. Conclusion: Besides potential new therapeutic targets, the described transcription profile shaped by MLL-AF9 provides an information source into the molecular processes altered in MLL aberrant leukemia

BAT (Berry Analysis Tool): A high-throughput image interpretation tool to acquire the number, diameter, and volume of grapevine berries

QTL-analysis (quantitative trait loci) and marker development rely on efficient phenotyping techniques. Objectivity and precision of a phenotypic data evaluation is crucial but time consuming. In the present study a high-throughput image interpretation tool was developed to acquire automatically number, size, and volume of grape berries from RGB (red-green-blue) images. Individual berries of one cluster were placed on a black construction (300 x 300 mm) to take a RGB image from the top. The image interpretation of one dataset with an arbitrary number of images runs automatically using the BAT (Berry-Analysis-Tool) developed in MATLAB. For validation of results, the number of berries was counted and their size was measured using a digital calliper. A measuring cylinder was used to determine reliably the berry volume by displacement of water. All placed berries could be counted by BAT 100 % correctly. Manual ratings compared with BAT ratings showed strong correlation of r = 0.96 for mean berry diameter/image and r = 0.98 for cluster volume.