Paleoceanography of the eastern equatorial Pacific during the Neogene: Synthesis of Leg 138 drilling results

The primary objective of Leg 138 was to provide detailed information about the ocean\u27s response to global climate change during the Neogene. Two north-south transects were drilled (95° and 110°W) within the region of equatorial divergence-driven upwelling (and thus high accumulation rates and resolution) and spanning the major equatorial ocean current boundaries (and thus recording a high-amplitude signal of the response of the sediment to climatically and/or tectonically driven changes in ocean circulation). The Neogene is marked by a number of well-known climatic and tectonic events (the closing of the Isthmus of Panama, the onset of North Atlantic Deep Water (NADW), the rapid uplift of the Himalayas, the major intensification of Northern Hemisphere glaciation), and the response of the ocean before and after these events was a key focus of Leg 138 drilling. To address these objectives at the highest resolution possible, the Leg 138 scientific staff developed a number of new shipboard strategies and analytical procedures. These included the real-time analysis of the near-continuous gamma ray attenuation porosity evaluator (GRAPE) and susceptibility profiles produced by the multisensor track (MST) on unsplit cores to monitor core recovery and, if necessary, to modify the drilling strategy to ensure proper offset of coring gaps; the collection of near-continuous color reflectance data on split cores; the logging of the first hole drilled at each site to optimize drilling and sampling strategies for subsequent holes; and the use of multiple continuous records to unambiguously construct complete composite sections for each site. The complete, continuous records provided by the GRAPE (with a temporal resolution of often yr), in conjunction with an excellent microfossil stratigraphy and often excellent magnetostratigraphy, allowed for astronomical tuning of the stratigraphic record and resulted in a set of internally consistent, high-resolution age models that provide a secure, absolute time scale for the past 6 m.y. For the period before 6 m.y., the absolute time calibration is less secure, but it is still better than any previously offered. The high-resolution stratigraphic framework of Leg 138 provided new insight into the previously ambiguous tectonic history of the region. By assuming that maximum sedimentation rates along the north-south transect would be expected at the equator, the Leg 138 stratigraphy supports the 1985 work of Cox and Engerbretson, which calls for two different poles of rotation of the Pacific Plate during the interval 0-20 Ma. The Leg 138 plate reconstructions also support several previously hypothesized ridge crest jumps and a slowing of the absolute motion of the Nazca Plate at about 5 Ma. Although Leg 138 data that predates about 13 Ma is limited, the impression that one can gain from these data is that the eastern equatorial Pacific was characterized by relatively high carbonate concentrations and accumulation rates before about 11 Ma. This pattern was interrupted occasionally by rapid massive outpourings of near-monospecific laminated diatom oozes that probably represent the formation of massive mats along strong surface-water fronts. The laminated diatom oozes (LDO) continue to be present in the Leg 138 record (many of them being expressed as seismic reflections) until about 4.4 Ma. Carbonate accumulation rates begin to decline slowly between 11 and 9.8 Ma, when, at about 9.5 Ma, a near-complete loss of carbonate (the carbonate crash ) takes place everywhere in the Leg 138 region (and beyond), except at the westernmost sites close to the equator. The carbonate crash was a time of fundamental change for the eastern equatorial Pacific, and perhaps for most of the ocean basins. Unlike many of the carbonate variations that precede and postdate it, this crash represents a major dissolution event whose effects can be traced seismically in the central and western Pacific. The changes in bottom-water chemistry associated with this event (or series of events) appear to be related to the early phases of the closing of the Panama Gateway. The role of NADW initiation and intensification for controlling carbonate accumulation in the eastern equatorial Pacific is still not resolved; however, ocean modeling demonstrates that the closing of the Panama Gateway may also have a direct influence on NADW production. Therefore, the effects of changes in the Panama Gateway sill depth and the production of NADW may be manifested in the history of eastern equatorial Pacific sedimentation. The carbonate crash was followed by a recovery of the carbonate system (except in the Guatemala and Peru basins, which never recovered) that led up to the late Miocene/early Pliocene sedimentation rate maxima, during which equatorial sedimentation rates are as much as five times greater than those of the late Pliocene or Pleistocene. Examination of modern productivity/preser vation relationships implies that the sedimentation rate maximum was the result of enhanced productivity. The distribution of eolian sediments and isotopic gradients, along with an analysis of the modes of variance in carbonate deposition over the last 6 m.y., suggest a more northerly position of the Intertropical Convergence Zone (ITCZ), a stronger north-south gradient across the equator, and a more zonal circulation focused along the equator during the time of maximum sedimentation. The mechanisms suggested for these changes in circulation patterns include the response of the eastern equatorial Pacific to the closing of the Isthmus of Panama, as well as a global increase in the flux of Ca and Si into the oceans, a possible response to evolution of the Himalayas and the Tibetan Plateau. In an effort to understand the response of the climate system to external (orbital) forcing, 6-m.y.-long, continuous records of carbonate (derived from GRAPE), δ 1 8 and insolation were analyzed and compared. Evolutionary spectral calculations of the variance and coherence among these records indicate that the insolation record is dominated by precessional frequencies, but that the relative importance of the two precessional frequencies has changed significantly over the last 6 m.y. In general, precessional forcing is not found in the carbonate or isotopic records. In the tilt band, however, a linear response is present between solar forcing and the carbonate and isotope records over some intervals. The carbonate record appears to be tightly coupled to the tilt component of insolation before about 1.9 Ma; however, the isotope record does not begin to show sensitivity to orbital tilt until about 4.5 Ma, the time of significant changes in sedimentation patterns in the eastern equatorial Pacific. Only during the last 500,000 yr do all frequencies respond in a similar manner; we also see a marked increase in the response of the isotopic record to orbital forcing (including 100,000- and 400,000-yr periods)

A note on the expressive power of linear orders

This article shows that there exist two particular linear orders such that first-order logic with these two linear orders has the same expressive power as first-order logic with the Bit-predicate FO(Bit). As a corollary we obtain that there also exists a built-in permutation such that first-order logic with a linear order and this permutation is as expressive as FO(Bit)

1995, Spatial and temporal variability of late Neogene equatorial Pacific carbonate

High-resolution, continuous records of GRAPE wet bulk density (a carbonate proxy) from Ocean Drilling Program Leg 138 provide one the opportunity for a detailed study of eastern equatorial Pacific Ocean carbonate sedimentation during the last 6 m.y. The transect of sites drilled spans both latitude and longitude in the eastern equatorial Pacific from 90° to 110°W and from 5°S to 10°N. Two modes of variability are resolved through the use of Empirical Orthogonal Function (EOF) analysis. In the presence of large tectonic and climatic boundary condition changes over the last 6 m.y., the dominant mode of spatial variability in carbonate sedimentation is remarkably constant. The first mode accounts for over 50% of the variance in the data, and is consistent with forcing by equatorial divergence. This mode characterizes both carbonate concentration and carbonate mass accumulation rate time series. Variability in the first mode is highly coherent with insolation, indicating a strong linear relationship between equatorial Pacific car bonate sedimentation and Milankovitch variability. Frequency domain analysis indicates that the coupling to equatorial divergence in carbonate sedimentation is strongest in the precession band (19-23 k.y.) and weakest though present at lower frequencies. The second mode of variability has a consistent spatial pattern of east-west asymmetry over the past 4 m.y. only; prior to 4 Ma, a different mode of spatial variability may have been present, possibly suggesting influence by closure of the Isthmus of Panama or other tectonic changes. The second mode of variability may indicate influence by CaCO3 dissolution. The second mode of variability is not highly coherent with insolation. Comparison of the modes of carbonate variability to a 4 m.y. record of benthic δ 1 8 indicates that although overall correlation between carbonate and δ 1 8 is low, both modes of variability in carbonate sedimentation are coherent with δ 1 8 changes at some frequencies. The first mode of carbonate variability is coherent with Sites 846/849 δ 1 8 at the dominant insolation periods, and the second mode is coherent at 100 k.y. during the last 2 m.y. The coherence between carbonate sedimentation and δ 1 8 in both EOF modes suggests that multiple uncorrelated modes of variability operated within the climate system during the late Neogene

Leveraging OpenStack and Ceph for a Controlled-Access Data Cloud

While traditional HPC has and continues to satisfy most workflows, a new generation of researchers has emerged looking for sophisticated, scalable, on-demand, and self-service control of compute infrastructure in a cloud-like environment. Many also seek safe harbors to operate on or store sensitive and/or controlled-access data in a high capacity environment. To cater to these modern users, the Minnesota Supercomputing Institute designed and deployed Stratus, a locally-hosted cloud environment powered by the OpenStack platform, and backed by Ceph storage. The subscription-based service complements existing HPC systems by satisfying the following unmet needs of our users: a) on-demand availability of compute resources, b) long-running jobs (i.e., $> 30$ days), c) container-based computing with Docker, and d) adequate security controls to comply with controlled-access data requirements. This document provides an in-depth look at the design of Stratus with respect to security and compliance with the NIH's controlled-access data policy. Emphasis is placed on lessons learned while integrating OpenStack and Ceph features into a so-called "walled garden", and how those technologies influenced the security design. Many features of Stratus, including tiered secure storage with the introduction of a controlled-access data "cache", fault-tolerant live-migrations, and fully integrated two-factor authentication, depend on recent OpenStack and Ceph features.Comment: 7 pages, 5 figures, PEARC '18: Practice and Experience in Advanced Research Computing, July 22--26, 2018, Pittsburgh, PA, US

Theories for TC0 and Other Small Complexity Classes

We present a general method for introducing finitely axiomatizable "minimal" two-sorted theories for various subclasses of P (problems solvable in polynomial time). The two sorts are natural numbers and finite sets of natural numbers. The latter are essentially the finite binary strings, which provide a natural domain for defining the functions and sets in small complexity classes. We concentrate on the complexity class TC^0, whose problems are defined by uniform polynomial-size families of bounded-depth Boolean circuits with majority gates. We present an elegant theory VTC^0 in which the provably-total functions are those associated with TC^0, and then prove that VTC^0 is "isomorphic" to a different-looking single-sorted theory introduced by Johannsen and Pollet. The most technical part of the isomorphism proof is defining binary number multiplication in terms a bit-counting function, and showing how to formalize the proofs of its algebraic properties.Comment: 40 pages, Logical Methods in Computer Scienc

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana).

Sugar pine (Pinus lambertiana Douglas) is within the subgenus Strobus with an estimated genome size of 31 Gbp. Transcriptomic resources are of particular interest in conifers due to the challenges presented in their megagenomes for gene identification. In this study, we present the first comprehensive survey of the P. lambertiana transcriptome through deep sequencing of a variety of tissue types to generate more than 2.5 billion short reads. Third generation, long reads generated through PacBio Iso-Seq have been included for the first time in conifers to combat the challenges associated with de novo transcriptome assembly. A technology comparison is provided here to contribute to the otherwise scarce comparisons of second and third generation transcriptome sequencing approaches in plant species. In addition, the transcriptome reference was essential for gene model identification and quality assessment in the parallel project responsible for sequencing and assembly of the entire genome. In this study, the transcriptomic data were also used to address questions surrounding lineage-specific Dicer-like proteins in conifers. These proteins play a role in the control of transposable element proliferation and the related genome expansion in conifers

Extracting Physical IC Models using Near-field Scanning

Accurate modeling of chip and chip-package is critical for EMI (Electromagnetic Interference) and RFI (RF Interference) analysis and prediction. in this paper, a model based on an array of dipoles from near-field measurement is proposed. a simple active circuit is simulated in a 3-D full-wave simulation tool, and the dipole model is calculated from the near-field data in the simulation using inverse method with regularization technique. This model has clear physical meaning, and it is validated using field at another place. ©2010 IEEE

Knowledge and attitudes about genital herpes and acquired immunodeficiency syndrome among future teachers

This study measured knowledge and attitudes about genital herpes and human immunodeficiency virus/acquired immunodeficiency syndrome (HIV/AIDS) in a sample of future teachers from the College of Education at Oregon State University. The objectives of the study were 1) to determine if students possess accurate knowledge about the two diseases; 2) to measure attitudes toward people with the two diseases; 3) to assess the relationship, if any, between knowledge and attitudes; 4) to compare knowledge and attitudes about genital herpes with knowledge and attitudes about HIV/AIDS; and 5) to compare knowledge and attitudes about genital herpes in 1990 to data from a similar study conducted in 1984. A convenience sample of 150 students was obtained from undergraduate classes in the College of Education during Spring Term 1990. Subjects completed self-administered questionnaires about either genital herpes or HIV/AIDS during class time. Data were gathered using four instruments: A knowledge test, two attitude measures, and a demographic data questionnaire. Statistical tests used for data analysis were chi square, Pearson's correlation coefficient, Student's t-test, two-way analysis of variance (ANOVA), and repeated measures ANOVA. The significance level was .05. Knowledge scores on the HIV/AIDS test were quite high (mean score 88% correct), while the mean genital herpes knowledge score was relatively low (62% correct). Attitudes toward people with both genital herpes and HIV/AIDS were relatively accepting, but subjects were significantly more accepting toward people with genital herpes. The least accepting responses toward people with either disease occurred in regard to potentially sexual situations (e.g. dating, marriage). There was no gender difference in attitudes toward people with either disease. Attitudes were more positive in response to a vignette of a college student followed by a questionnaire, compared to responses made to a questionnaire only. Correlations were found between more knowledge and more accepting attitudes about both diseases. Finally, genital herpes knowledge scores were higher (mean score 62% correct) than scores from a similar study of genital herpes conducted in 1984 (mean score 57% correct). Attitudes toward people with genital herpes were more accepting in the 1990 sample than were attitudes in the 1984 sample. All findings reported here are statistically significant. Recommendations for future research and education among future teachers concerning sexually transmitted diseases (STD's) include 1) development of methods to transmit accurate information about STD's by personalizing these diseases and relating them to college students' experiences; 2) a research focus upon attitudes and perceptions about STD's among future teachers, including the issue of homophobia, and how these relate to behavior; and 3) thorough teacher preparation about STD's, focusing on accurate knowledge and impartial attitudes that allow this topic to be addressed effectively in the classroom. Future research among the general college student population should address 1) the relationship between knowledge, attitudes, perceptions, and behavior concerning STD's; 2) potential differences in responses made to a vignette followed by a questionnaire, compared to a questionnaire only; 3) students' source(s) of information about STD's, and level of trust in "scientific authority"; 4) possible interactions between religious influence and attitudes about STD's; 5) the existence of a stereotype of HIV/AIDS as a gay, male disease, and how this might affect attitudes and perceptions; 6) differences between males and females in terms of attitudes, especially with regard to homophobia; 7) the effectiveness of personalizing STD education to increase knowledge about and perceived susceptibility to STD's; 8) the interaction between societal values and personal values, and their effect on attitudes about STD's and sexual behavior