Binary morphological shape-based interpolation applied to 3-D tooth reconstruction

In this paper we propose an interpolation algorithm using a mathematical morphology morphing approach. The aim of this algorithm is to reconstruct the $n$-dimensional object from a group of (n-1)-dimensional sets representing sections of that object. The morphing transformation modifies pairs of consecutive sets such that they approach in shape and size. The interpolated set is achieved when the two consecutive sets are made idempotent by the morphing transformation. We prove the convergence of the morphological morphing. The entire object is modeled by successively interpolating a certain number of intermediary sets between each two consecutive given sets. We apply the interpolation algorithm for 3-D tooth reconstruction

Mean first passage time analysis reveals rate-limiting steps, parallel pathways and dead ends in a simple model of protein folding

We have analyzed dynamics on the complex free energy landscape of protein folding in the FOLD-X model, by calculating for each state of the system the mean first passage time to the folded state. The resulting kinetic map of the folding process shows that it proceeds in jumps between well-defined, local free energy minima. Closer analysis of the different local minima allows us to reveal secondary, parallel pathways as well as dead ends.Comment: 7 page

Community, work and family in diverse contexts and changing times

The 8th International Community, Work and Family conference took place in Malta at the Valletta campus of the University of Malta between the 23rd to the 25th May 2019. In a pre-COVID-19 world with no traveling restrictions, the conference brought together over 100 experts, academics, and students from a broad range of countries and disciplines to focus on the theme of Community, Work and Family in Diverse Contexts and Changing Times. The research presented during the conference highlights some of the challenges that communities, organizations and families are facing in the twenty-first century across diverse and rapidly changing contexts. The topics presented spanned from broad studies that analyze the work-life interface of well-studied groups such as fathers and mothers, to other clusters that are generally less well-researched such as the police and the military, migrants, solo entrepreneurs, the LGBTIQ community, and those who work with people with special needs. The recurrent theme of the gendered division of labor and work-life measures was discussed by various researchers, as were the issues of flexible work, family policy, and the impact of technology. It was refreshing to note that various researchers focused on the issue of community as a source of support, whilst others explored how peer, supervisor and management support impacts work-life issues. Overall, the conference provided a diverse and rich range of scholarly material upon which to develop this special issue for Community, Work & Family. [...

What thermodynamic features characterize good and bad folders? Results from a simplified off-lattice protein model

The thermodynamics of the small SH3 protein domain is studied by means of a simplified model where each bead-like amino acid interacts with the others through a contact potential controlled by a 20x20 random matrix. Good folding sequences, characterized by a low native energy, display three main thermodynamical phases, namely a coil-like phase, an unfolded globule and a folded phase (plus other two phases, namely frozen and random coil, populated only at extremes temperatures). Interestingly, the unfolded globule has some regions already structured. Poorly designed sequences, on the other hand, display a wide transition from the random coil to a frozen state. The comparison with the analytic theory of heteropolymers is discussed

Biological aspects and ecological effects of a bed of the invasive non-indigenous mussel Brachidontes pharaonis (Fischer P., 1870) in Malta

No mussel beds were known to occur in the Maltese Islands previous to 2009, when a single bed of the Lessepsian immigrant Brachidontes pharaonis, first recorded from the islands in 1970, was discovered in Birzebbugia Bay. The population structure of B. pharaonis was investigated to assess its potential to spread and colonise new shores, while the biotic community at the mussel bed was compared to that present on uncolonised substratum to determine the effects of mussel bed establishment on the associated biota. Results indicate a lower species richness and slightly different community structure with greater small-scale heterogeneity at the mussel bed site compared to the adjacent rocky shore where mussels are present but where there is no bed formation. The B. pharaonis population had a peak density of 16550 ± 2051 ind.m-2 within the mussel bed and included recent recruits. These data suggest that the B. pharaonis population has the potential to expand. Establishment of extensive beds by this invasive mussel could change the structure of native rocky shore assemblages around the Maltese Islands and elsewhere in the Mediterranean.peer-reviewe

Scale Free Cluster Distributions from Conserving Merging-Fragmentation Processes

We propose a dynamical scheme for the combined processes of fragmentation and merging as a model system for cluster dynamics in nature and society displaying scale invariant properties. The clusters merge and fragment with rates proportional to their sizes, conserving the total mass. The total number of clusters grows continuously but the full time-dependent distribution can be rescaled over at least 15 decades onto a universal curve which we derive analytically. This curve includes a scale free solution with a scaling exponent of -3/2 for the cluster sizes.Comment: 4 pages, 3 figure

Observations of magnetic flux ropes during magnetic reconnection in the Earth's magnetotail

We present an investigation of magnetic flux ropes observed by the four Cluster spacecraft during periods of magnetic reconnection in the Earth's magnetotail. Using a list of 21 Cluster encounters with the reconnection process in the period 2001–2006 identified in Borg et al. (2012), we present the distribution and characteristics of the flux ropes. We find 27 flux ropes embedded in the reconnection outflows of only 11 of the 21 reconnection encounters. Reconnection processes associated with no flux rope observations were not distinguishable from those where flux ropes were observed. Only 7 of the 27 flux ropes show evidence of enhanced energetic electron flux above 50 keV, and there was no clear signature of the flux rope in the thermal particle measurements. We found no clear correlation between the flux rope core field and the prevailing IMF <I>B</I>_y direction

On the incompatibility of strains and its application to mesoscopic studies of plasticity

Structural transitions are invariably affected by lattice distortions. If the body is to remain crack-free, the strain field cannot be arbitrary but has to satisfy the Saint-Venant compatibility constraint. Equivalently, an incompatibility constraint consistent with the actual dislocation network has to be satisfied in media with dislocations. This constraint can be incorporated into strain-based free energy functionals to study the influence of dislocations on phase stability. We provide a systematic analysis of this constraint in three dimensions and show how three incompatibility equations accommodate an arbitrary dislocation density. This approach allows the internal stress field to be calculated for an anisotropic material with spatially inhomogeneous microstructure and distribution of dislocations by minimizing the free energy. This is illustrated by calculating the stress field of an edge dislocation and comparing it with that of an edge dislocation in an infinite isotropic medium. We outline how this procedure can be utilized to study the interaction of plasticity with polarization and magnetization.Comment: 6 pages, 2 figures; will appear in Phys. Rev.

Design of amino acid sequences to fold into C_alpha-model proteins

In order to extend the results obtained with minimal lattice models to more realistic systems, we study a model where proteins are described as a chain of 20 kinds of structureless amino acids moving in a continuum space and interacting through a contact potential controlled by a 20x20 quenched random matrix. The goal of the present work is to design and characterize amino acid sequences folding to the SH3 conformation, a 60-residues recognition domain common to many regulatory proteins. We show that a number of sequences can fold, starting from a random conformation, to within a distance root mean square deviation (dRMSD) of 2.6A from the native state. Good folders are those sequences displaying in the native conformation an energy lower than a sequence--independent threshold energy