The effects of anisotropy on the long-wavelength excitations of itinerant ferromagnets

In this thesis I present a formalism for calculating the effects of magnetic anisotropy on the long wavelength excitations of a magnetically ordered itinerant electron system. It is derived from a relativistic multiple scattering theory treatment of the density functional formalism single electron equations. Multiple scattering theory is shown to be capable of describing the small anisotropy energies involved via work on the effects of anisotropy on magnetic interactions between magnetic impurities embedded in a non-magnetic metallic host. The addition of a third, heavy non-magnetic impurity is found to enhance the magnetic anisotropy energy of a magnetic pair in the system such that in some cases it becomes comparable in magnitude to the effective exchange energy. The resulting anisotropic magnetic interaction is found to be more complex than that shown by other model calculations. In attempting an investigation of the magnetic excitations by constructing a relativistic dynamic susceptibility-from a two electron Green’s function, it is found that solving the Kohn-Sham-Dirac single particle equations together with the Local Density Approximation in this situation leads to an inconsistency. As a result of this, the starting point for the subsequent analysis is the phenomenological equation of motion for a magnetic moment. It is known that one of the effects of magnetic anisotropy on the excitations is the existence of a gap in the spin-wave dispersion spectrum. The formalism gives the correct result in the non-relativistic limit, an absence of a gap, and is evaluated numerically for bcc iron, fee nickel and fee cobalt when relativistic effects are included. The results compare favourably against previous magnetic anisotropy calculations and experimental work

Assessing the Risk Posed by Transgenic Virus-Resistant Trifolium Repens to Native Grasslands in Southeast Australia

In Australia, comprehensive environmental risk assessments must be performed on transgenic plants (GMOs) prior to their commercial release. A key element is the determination of whether the release of a particular GMO poses any weediness threat to the environment or other agricultural systems, which can occur by means of direct invasion or by introgression of transgenes into wild populations of the same or closely related species. For transgenic pasture plants this question could be of added importance because many of these species have been selected for traits encouraging long-term persistence and competitiveness in complex plant communities (Godfree et al., 2004a). In situations where native vegetation is of high conservation value, such as Australia, the potential for transgenic pasture plants to invade native plant communities must therefore be quantified and analysed within a rigorous risk assessment framework. Over the past three years we have investigated the level of risk posed by transgenic virus-resistant (VR) Trifolium repens (white clover) to native grasslands and woodlands in the subalpine and montane regions of southeastern Australia. We have focused on identifying the viruses present in white clover populations in the subalpine zone, on determining the floristic composition of the communities that are most at risk, and on quantifying the likely selective advantage of VR T. repens in these environments

An end-to-end hyperspectral scene simulator with alternate adjacency effect models and its comparison with cameoSim

In this research, we developed a new rendering-based end to end Hyperspectral scene simulator CHIMES (Cranfield Hyperspectral Image Modelling and Evaluation System), which generates nadir images of passively illuminated 3-D outdoor scenes in Visible, Near Infrared (NIR) and Short-Wave Infrared (SWIR) regions, ranging from 360 nm to 2520 nm. MODTRAN TM (MODerate resolution TRANsmission), is used to generate the sky-dome environment map which includes sun and sky radiance along with the polarisation effect of the sky due to Rayleigh scattering. Moreover, we perform path tracing and implement ray interaction with medium and volumetric backscattering at rendering time to model the adjacency effect. We propose two variants of adjacency models, the first one incorporates a single spectral albedo as the averaged background of the scene, this model is called the Background One-Spectra Adjacency Effect Model (BOAEM), which is a CameoSim like model created for performance comparison. The second model calculates background albedo from a pixel’s neighbourhood, whose size depends on the air volume between sensor and target, and differential air density up to sensor altitude. Average background reflectance of all neighbourhood pixel is computed at rendering time for estimating the total upwelled scattered radiance, by volumetric scattering. This model is termed the Texture-Spectra Incorporated Adjacency Effect Model (TIAEM). Moreover, for estimating the underlying atmospheric condition MODTRAN is run with varying aerosol optical thickness and its total ground reflected radiance (TGRR) is compared with TGRR of known in-scene material. The Goodness of fit is evaluated in each iteration, and MODTRAN’s output with the best fit is selected. We perform a tri-modal validation of simulators on a real hyperspectral scene by varying atmospheric condition, terrain surface models and proposed variants of adjacency models. We compared results of our model with Lockheed Martin’s well-established scene simulator CameoSim and acquired Ground Truth (GT) by Hyspex cameras. In clear-sky conditions, both models of CHIMES and CameoSim are in close agreement, however, in searched overcast conditions CHIMES BOAEM is shown to perform better than CameoSim in terms of ℓ1 -norm error of the whole scene with respect to GT. TIAEM produces better radiance shape and covariance of background statistics with respect to Ground Truth (GT), which is key to good target detection performance. We also report that the results of CameoSim have a many-fold higher error for the same scene when the flat surface terrain is replaced with a Digital Elevation Model (DEM) based rugged one

Clinically relevant atovaquone-resistant human malaria parasites fail to transmit by mosquito.

Long-acting injectable medications, such as atovaquone, offer the prospect of a "chemical vaccine" for malaria, combining drug efficacy with vaccine durability. However, selection and transmission of drug-resistant parasites is of concern. Laboratory studies have indicated that atovaquone resistance disadvantages parasites in mosquitoes, but lack of data on clinically relevant Plasmodium falciparum has hampered integration of these variable findings into drug development decisions. Here we generate atovaquone-resistant parasites that differ from wild type parent by only a Y268S mutation in cytochrome b, a modification associated with atovaquone treatment failure in humans. Relative to wild type, Y268S parasites evidence multiple defects, most marked in their development in mosquitoes, whether from Southeast Asia (Anopheles stephensi) or Africa (An. gambiae). Growth of asexual Y268S P. falciparum in human red cells is impaired, but parasite loss in the mosquito is progressive, from reduced gametocyte exflagellation, to smaller number and size of oocysts, and finally to absence of sporozoites. The Y268S mutant fails to transmit from mosquitoes to mice engrafted with human liver cells and erythrocytes. The severe-to-lethal fitness cost of clinically relevant atovaquone resistance to P. falciparum in the mosquito substantially lessens the likelihood of its transmission in the field

Severe effects of long-term drought on calcareous grassland seed banks

Climate change models project shifts in precipitation patterns at regional and global scales. Increases in dry areas and the occurrence of drought predicted in future scenarios are likely to threaten grassland ecosystems. Calcareous grassland seed banks have proven to be resistant to short-term drought, but their responses to long-term drought are unknown. Here we show that 14 years of summer drought changed calcareous grassland seed bank composition, reducing its size and richness, and that these responses do not simply reflect patterns in the above-ground vegetation. Moreover, the effect of drought was larger on seed banks than on vegetation, and above-ground responses mediated by soil depth were less evident in the seed bank than in the vegetation. These results demonstrate that the severity of drought effects on calcareous grasslands is larger than previously thought, and show that this ecosystem is highly vulnerable and has low resilience to predicted decreases in soil moisture

Functional characterization of malaria parasites deficient in the K⁺ channel Kch2

© 2017 Elsevier Inc. K+ channels are integral membrane proteins, which contribute to maintain vital parameters such as the cellular membrane potential and cell volume. Malaria parasites encode two K+ channel homologues, Kch1 and Kch2, which are well-conserved among members of the Plasmodium genus. In the rodent malaria parasite P. berghei, the functional significance of K+ channel homologue PbKch2 was studied using targeted gene knock-out. The knockout parasites were characterized in a mouse model in terms of growth-kinetics and infectivity in the mosquito vector. Furthermore, using a tracer-uptake technique with 86Rb+ as a K+ congener, the K+ transporting properties of the knockout parasites were assessed. Results Genetic disruption of Kch2 did not grossly affect the phenotype in terms of asexual replication and pathogenicity in a mouse model. In contrast to Kch1-null parasites, Kch2-null parasites were fully capable of forming oocysts in female Anopheles stephensi mosquitoes. 86Rb+ uptake in Kch2-deficient blood-stage P. berghei parasites (Kch2-null) did not differ from that of wild-type (WT) parasites. About two-thirds of the 86Rb+ uptake in WT and in Kch2-null parasites could be inhibited by K+ channel blockers and could be inferred to the presence of functional Kch1 in Kch2 knockout parasites. Kch2 is therefore not required for transport of K+ in P. berghei and is not essential to mosquito-stage sporogonic development of the parasite