From isovists to visibility graphs: a methodology for the analysis of architectural space

An isovist, or viewshed, is the area in a spatial environment directly visible from a location within the space. Here we show how a set of isovists can be used to generate a graph of mutual visibility between locations. We demonstrate that this graph can also be constructed without reference to isovists and that we are in fact invoking the more general concept of a visibility graph. Using the visibility graph, we can extend both isovist and current graph-based analyses of architectural space to form a new methodology for the investigation of configurational relationships. The measurement of local and global characteristics of the graph, for each vertex or for the system as a whole, is of interest from an architectural perspective, allowing us to describe a configuration with reference to accessibility and visibility, to compare from location to location within a system, and to compare systems with different geometries. Finally we show that visibility graph properties may be closely related to manifestations of spatial perception, such as way-finding, movement, and space use

Climate change on sea currents is not expected to alter contemporary migration routes of loggerhead sea turtles

For marine species, traveling with the current potentially reduces energetic costs. Still, the extent to which organisms adjust routes to follow current flow remains an open question. Moreover, the extent to which climate change is altering sea currents, and in turn species migration routes, remains unknown, representing a major challenge to spatial ecology and conservation efforts.We developed an approach to assess the extent to which projected optimal paths and corridors overlap with the observed migration routes of loggerhead sea turtles (Caretta caretta), minimizing exposure to opposing sea currents. To illustrate this approach, we used migratory tracks of the species traveling between breeding and foraging areas in the Mediterranean Sea. We calculated the energetic costs to sea turtles based on actual tracks and corresponding optimal paths. We also explored whether projected changes in ocean currents, driven by climate change, would alter the spatial patterns of optimal routes.The energetic cost of observed tracks was, on average, 1.25 times higher than that of corresponding optimal paths. While optimal corridors differed spatially to observed corridors used by loggerheads, some positive correlations still existed for three cases ( 0.43, 0.42, 0.30). Climate change projections showed no significant change to the migratory movement of sea turtles, as corridors for different climatic conditions overlapped by at least 70%.Our results show that loggerheads do not explicitly take advantage of ocean currents to facilitate long distance migrations and reduce energetic demands. The contemporary and future migration routes are characterized by similar energetic demands and together with their strong spatial overlap suggest that climate change is expected to minimally alter the species migration routes in the future. The approach presented here could be applied to different spatial scales and marine taxa, allowing possible mechanisms between sea currents (or other environmental characteristics) and species movements to be elucidated

Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice.

To gain insight into how mutant huntingtin (mHtt) CAG repeat length modifies Huntington's disease (HD) pathogenesis, we profiled mRNA in over 600 brain and peripheral tissue samples from HD knock-in mice with increasing CAG repeat lengths. We found repeat length-dependent transcriptional signatures to be prominent in the striatum, less so in cortex, and minimal in the liver. Coexpression network analyses revealed 13 striatal and 5 cortical modules that correlated highly with CAG length and age, and that were preserved in HD models and sometimes in patients. Top striatal modules implicated mHtt CAG length and age in graded impairment in the expression of identity genes for striatal medium spiny neurons and in dysregulation of cyclic AMP signaling, cell death and protocadherin genes. We used proteomics to confirm 790 genes and 5 striatal modules with CAG length-dependent dysregulation at the protein level, and validated 22 striatal module genes as modifiers of mHtt toxicities in vivo

Strengthening Angel Shark Conservation in the Northeastern Mediterranean Sea

Angel sharks are among the most threatened species of sharks globally. Twenty-two species have been identified globally so far, with three species being present in the Mediterranean Sea: Squatina aculeata, Squatina oculata, and Squatina squatina. The Mediterranean populations of all three species have been assessed as Critically Endangered by the IUCN Red List of Threatened Species due to the steep decline of their populations as a result of their historical and current overexploitation by demersal fisheries. Therefore, currently there is an ongoing increasing effort for advancing the conservation of the species in the basin. Recently, in the context of the Regional Action Plan for Mediterranean Angel Sharks, the Aegean Sea and Crete have been identified as critical areas for all three species. This study provides the first predictive distribution map of the three angel shark species in the basin, while critical areas for the conservation of the species were identified through a systematic spatial conservation planning analysis. Our analysis revealed low overlapping between the existing MPA network and critical areas for the distribution of the species primarily in Greece and then Turkey, while 20% of the critical areas for the distribution of the species overlaps with Fisheries Restricted Areas of the region. This highlights the need for creating MPAs focusing on shark conservation within the Mediterranean that are currently completely absent. In addition, we provide policy recommendations that can secure better protection of angel sharks through the enforcement of the current legislations and the engagement of all relevant stakeholders.</jats:p

A Multiancestral Genome-Wide Exome Array Study of Alzheimer Disease, Frontotemporal Dementia, and Progressive Supranuclear Palsy

Importance Previous studies have indicated a heritable component of the etiology of neurodegenerative diseases such as Alzheimer disease (AD), frontotemporal dementia (FTD), and progressive supranuclear palsy (PSP). However, few have examined the contribution of low-frequency coding variants on a genome-wide level. Objective To identify low-frequency coding variants that affect susceptibility to AD, FTD, and PSP. Design, Setting, and Participants We used the Illumina HumanExome BeadChip array to genotype a large number of variants (most of which are low-frequency coding variants) in a cohort of patients with neurodegenerative disease (224 with AD, 168 with FTD, and 48 with PSP) and in 224 control individuals without dementia enrolled between 2005-2012 from multiple centers participating in the Genetic Investigation in Frontotemporal Dementia and Alzheimer’s Disease (GIFT) Study. An additional multiancestral replication cohort of 240 patients with AD and 240 controls without dementia was used to validate suggestive findings. Variant-level association testing and gene-based testing were performed. Main Outcomes and Measures Statistical association of genetic variants with clinical diagnosis of AD, FTD, and PSP. Results Genetic variants typed by the exome array explained 44%, 53%, and 57% of the total phenotypic variance of AD, FTD, and PSP, respectively. An association with the known AD gene ABCA7 was replicated in several ancestries (discovery P = .0049, European P = .041, African American P = .043, and Asian P = .027), suggesting that exonic variants within this gene modify AD susceptibility. In addition, 2 suggestive candidate genes, DYSF (P = 5.53 × 10−5) and PAXIP1 (P = 2.26 × 10−4), were highlighted in patients with AD and differentially expressed in AD brain. Corroborating evidence from other exome array studies and gene expression data points toward potential involvement of these genes in the pathogenesis of AD. Conclusions and Relevance Low-frequency coding variants with intermediate effect size may account for a significant fraction of the genetic susceptibility to AD and FTD. Furthermore, we found evidence that coding variants in the known susceptibility gene ABCA7, as well as candidate genes DYSF and PAXIP1, confer risk for AD

Priorities for Mediterranean marine turtle conservation and management in the face of climate change

As climate-related impacts threaten marine biodiversity globally, it is important to adjust conservation efforts to mitigate the effects of climate change. Translating scientific knowledge into practical management, however, is often complicated due to resource, economic and policy constraints, generating a knowledge-action gap. To develop potential solutions for marine turtle conservation, we explored the perceptions of key actors across 18 countries in the Mediterranean. These actors evaluated their perceived relative importance of 19 adaptation and mitigation measures that could safeguard marine turtles from climate change. Of importance, despite differences in expertise, experience and focal country, the perceptions of researchers and management practitioners largely converged with respect to prioritizing adaptation and mitigation measures. Climate change was considered to have the greatest impacts on offspring sex ratios and suitable nesting sites. The most viable adaptation/mitigation measures were considered to be reducing other pressures that act in parallel to climate change. Ecological effectiveness represented a key determinant for implementing proposed measures, followed by practical applicability, financial cost, and societal cost. This convergence in opinions across actors likely reflects long-standing initiatives in the Mediterranean region towards supporting knowledge exchange in marine turtle conservation. Our results provide important guidance on how to prioritize measures that incorporate climate change in decision-making processes related to the current and future management and protection of marine turtles at the ocean-basin scale, and could be used to guide decisions in other regions globally. Importantly, this study demonstrates a successful example of how interactive processes can be used to fill the knowledge-action gap between research and management.This work was conducted under FutureMares EU project that received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 869300. The Mediterranean Marine Turtle Working Group was established in 2017 and is continuously supported by MedPAN and the National Marine Park of Zakynthos. The work of AC was supported by the Hellenic Foundation for Research and Innovation (H.F.R.I.) under the “First Call for H.F.R.I. Research Projects to support Faculty members and Researchers and the procurement of high-cost research equipment grant” (Project Number: 2340).Peer reviewe