Self-Evaluation Applied Mathematics 2003-2008 University of Twente

This report contains the self-study for the research assessment of the Department of Applied Mathematics (AM) of the Faculty of Electrical Engineering, Mathematics and Computer Science (EEMCS) at the University of Twente (UT). The report provides the information for the Research Assessment Committee for Applied Mathematics, dealing with mathematical sciences at the three universities of technology in the Netherlands. It describes the state of affairs pertaining to the period 1 January 2003 to 31 December 2008

Common metrics for cellular automata models of complex systems

The creation and use of models is critical not only to the scientific process, but also to life in general. Selected features of a system are abstracted into a model that can then be used to gain knowledge of the workings of the observed system and even anticipate its future behaviour. A key feature of the modelling process is the identification of commonality. This allows previous experience of one model to be used in a new or unfamiliar situation. This recognition of commonality between models allows standards to be formed, especially in areas such as measurement. How everyday physical objects are measured is built on an ingrained acceptance of their underlying commonality. Complex systems, often with their layers of interwoven interactions, are harder to model and, therefore, to measure and predict. Indeed, the inability to compute and model a complex system, except at a localised and temporal level, can be seen as one of its defining attributes. The establishing of commonality between complex systems provides the opportunity to find common metrics. This work looks at two dimensional cellular automata, which are widely used as a simple modelling tool for a variety of systems. This has led to a very diverse range of systems using a common modelling environment based on a lattice of cells. This provides a possible common link between systems using cellular automata that could be exploited to find a common metric that provided information on a diverse range of systems. An enhancement of a categorisation of cellular automata model types used for biological studies is proposed and expanded to include other disciplines. The thesis outlines a new metric, the C-Value, created by the author. This metric, based on the connectedness of the active elements on the cellular automata grid, is then tested with three models built to represent three of the four categories of cellular automata model types. The results show that the new C-Value provides a good indicator of the gathering of active cells on a grid into a single, compact cluster and of indicating, when correlated with the mean density of active cells on the lattice, that their distribution is random. This provides a range to define the disordered and ordered state of a grid. The use of the C-Value in a localised context shows potential for identifying patterns of clusters on the grid

Knowledge Augmentation in Language Models to Overcome Domain Adaptation and Scarce Data Challenges in Clinical Domain

The co-existence of two scenarios, “the massive amount of unstructured text data that humanity produces” and “the scarcity of sufficient training data to train language models,” in the healthcare domain have multifold increased the need for intelligent tools and techniques to process, interpret and extract different types of knowledge from the data. My research goal in this thesis is to develop intelligent methods and models to automatically better interpret human language and sentiments, particularly its structure and semantics, to solve multiple higher-level Natural Language Processing (NLP) downstream tasks and beyond. This thesis is spread over six chapters and is divided into two parts based on the contributions. The first part is centered on best practices for modeling data and injecting domain knowledge to enrich data semantics applied to tackle several classification tasks in the healthcare domain and beyond. The contribution is to reduce the training time, improve the performance of classification models, and use world knowledge as a source of domain knowledge when working with limited/small training data. The second part introduces the one of its kind high-quality dataset of Motivational Interviewing (MI), AnnoMI, followed by the experimental benchmarking analysis for AnnoMI. The contribution accounts to provide a publicly accessible dataset of Motivational Interviewing and methods to overcome data scarcity challenges in complex domains (such as mental health). The overall organization of the thesis is as follows: \\ The first chapter provides a high-level introduction to the tools and techniques applied in the scope of the thesis. The second chapter presents optimal methods for (i) feature selection, (ii) eliminating irrelevant and superfluous attributes from the dataset, (iii) data preprocessing, and (iv) advanced data representation methods (word embedding and bag-of-words) to model data. The third chapter introduces the Language Model (LM), K-LM, a combination of Generative Pretrained Transformer (GPT)-2 and Bidirectional Encoder Representations from Transformers (BERT) that uses knowledge graphs to inject domain knowledge for domain adaptation tasks. The end goal of this chapter is to reduce the training time and improve the performance of classification models when working with limited/small training data. The fourth chapter introduces the high-quality dataset of expert-annotated MI (AnnoMI), comprised of 133 therapy session transcriptions distributed over 44 topics (including smoking cessation, anxiety management, weight loss, etc.), and provides an in-depth analysis of the dataset. \\ The fifth chapter presents the experimental analysis with AnnoMI, which includes (i) augmentation techniques to generate data and (ii) fairness and bias assessments of the employed Classical Machine Learning (CML) and Deep Learning (DL) approach to develop reliable classification models. Finally, the sixth chapter provides the conclusion and outcomes of all the work presented in this thesis. The scientific contributions of this thesis include the solution to overcome the challenges of scarce training data in complex domains and domain adaptation in LMs. The practical contributions of the thesis are data resources and the language model for a range of quantitative and qualitative NLP applications. Keywords: Natural Language Processing, Domain Adaptation, Motivational Interviewing, AI Fairness and Bias, Data Augmentation, GPT, BERT, Healthcare

Interim research assessment 2003-2005 - Computer Science

This report primarily serves as a source of information for the 2007 Interim Research Assessment Committee for Computer Science at the three technical universities in the Netherlands. The report also provides information for others interested in our research activities

Evaluation in artificial intelligence: From task-oriented to ability-oriented measurement

The final publication is available at Springer via http://dx.doi.org/ 10.1007/s10462-016-9505-7.The evaluation of artificial intelligence systems and components is crucial for the progress of the discipline. In this paper we describe and critically assess the different ways AI systems are evaluated, and the role of components and techniques in these systems. We first focus on the traditional task-oriented evaluation approach. We identify three kinds of evaluation: human discrimination, problem benchmarks and peer confrontation. We describe some of the limitations of the many evaluation schemes and competitions in these three categories, and follow the progression of some of these tests. We then focus on a less customary (and challenging) ability-oriented evaluation approach, where a system is characterised by its (cognitive) abilities, rather than by the tasks it is designed to solve. We discuss several possibilities: the adaptation of cognitive tests used for humans and animals, the development of tests derived from algorithmic information theory or more integrated approaches under the perspective of universal psychometrics. We analyse some evaluation tests from AI that are better positioned for an ability-oriented evaluation and discuss how their problems and limitations can possibly be addressed with some of the tools and ideas that appear within the paper. Finally, we enumerate a series of lessons learnt and generic guidelines to be used when an AI evaluation scheme is under consideration.I thank the organisers of the AEPIA Summer School On Artificial Intelligence, held in September 2014, for giving me the opportunity to give a lecture on 'AI Evaluation'. This paper was born out of and evolved through that lecture. The information about many benchmarks and competitions discussed in this paper have been contrasted with information from and discussions with many people: M. Bedia, A. Cangelosi, C. Dimitrakakis, I. GarcIa-Varea, Katja Hofmann, W. Langdon, E. Messina, S. Mueller, M. Siebers and C. Soares. Figure 4 is courtesy of F. Martinez-Plumed. Finally, I thank the anonymous reviewers, whose comments have helped to significantly improve the balance and coverage of the paper. This work has been partially supported by the EU (FEDER) and the Spanish MINECO under Grants TIN 2013-45732-C4-1-P, TIN 2015-69175-C4-1-R and by Generalitat Valenciana PROMETEOII2015/013.José Hernández-Orallo (2016). Evaluation in artificial intelligence: From task-oriented to ability-oriented measurement. 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