3D Visualization of geological structures using Python: the case study of the Palomeque sheets (SE, Spain)

The goal of this paper is the construction of computerized 3D visualization of geological structures. Several Python applications have been used to adapt the paper map-based geological classical information to numerical geological maps represented in HTML files. The models include a map with the stratigraphic and structural contacts and symbols, five serial vertical sections, and a geological block diagram, all with real topography. This block diagram made with 2D figures allows a 3D visualization. Palomeque area (Murcia region, southeastern Spain) has been used as a key-case. This area consists of a deformed Upper Cretaceous to Oligocene succession belonging to the Internal Zone Malaguide Complex. The main structure consists of two thrust-fold sheets forming an imbricate system, also affected by a set of strike-slip faults with a sinistral regime. The constructed maps show a good agreement with the published classical geological maps and cross-sections demonstrating the benefits of using these Python applications.The authors would like to acknowledge the Spanish Ministry of Science and Innovation Research Project PID2020-114381GB-100, semigrupos.ugr.es from University of Granada and Research Groups FQM-343 of the Junta de Andalucía, and Research Groups and Projects of the Generalitat Valenciana-University of Alicante, for financial support

A K-Nearest Neighbors Algorithm in Python for Visualizing the 3D Stratigraphic Architecture of the Llobregat River Delta in NE Spain

The k-nearest neighbors (KNN) algorithm is a non-parametric supervised machine learning classifier; which uses proximity and similarity to make classifications or predictions about the grouping of an individual data point. This ability makes the KNN algorithm ideal for classifying datasets of geological variables and parameters prior to 3D visualization. This paper introduces a machine learning KNN algorithm and Python libraries for visualizing the 3D stratigraphic architecture of sedimentary porous media in the Quaternary onshore Llobregat River Delta (LRD) in northeastern Spain. A first HTML model showed a consecutive 5 m-equispaced set of horizontal sections of the granulometry classes created with the KNN algorithm from 0 to 120 m below sea level in the onshore LRD. A second HTML model showed the 3D mapping of the main Quaternary gravel and coarse sand sedimentary bodies (lithosomes) and the basement (Pliocene and older rocks) top surface created with Python libraries. These results reproduce well the complex sedimentary structure of the LRD reported in recent scientific publications and proves the suitability of the KNN algorithm and Python libraries for visualizing the 3D stratigraphic structure of sedimentary porous media, which is a crucial stage in making decisions in different environmental and economic geology disciplines.Junta de Andalucia FQM-343 RNM-188Spanish Government PID2020-114381GB-100Generalitat Valenciana from the University of Alicante (CTMAIGA

A K-Nearest Neighbors Algorithm in Python for Visualizing the 3D Stratigraphic Architecture of the Llobregat River Delta in NE Spain

The k-nearest neighbors (KNN) algorithm is a non-parametric supervised machine learning classifier; which uses proximity and similarity to make classifications or predictions about the grouping of an individual data point. This ability makes the KNN algorithm ideal for classifying datasets of geological variables and parameters prior to 3D visualization. This paper introduces a machine learning KNN algorithm and Python libraries for visualizing the 3D stratigraphic architecture of sedimentary porous media in the Quaternary onshore Llobregat River Delta (LRD) in northeastern Spain. A first HTML model showed a consecutive 5 m-equispaced set of horizontal sections of the granulometry classes created with the KNN algorithm from 0 to 120 m below sea level in the onshore LRD. A second HTML model showed the 3D mapping of the main Quaternary gravel and coarse sand sedimentary bodies (lithosomes) and the basement (Pliocene and older rocks) top surface created with Python libraries. These results reproduce well the complex sedimentary structure of the LRD reported in recent scientific publications and proves the suitability of the KNN algorithm and Python libraries for visualizing the 3D stratigraphic structure of sedimentary porous media, which is a crucial stage in making decisions in different environmental and economic geology disciplines.Research Project PID2020-114381GB-100 of the Spanish Ministry of Science and Innovation, Research Groups and Projects of the Generalitat Valenciana from the University of Alicante (CTMA-IGA), and Research Groups FQM-343 and RNM-188 of the Junta de Andalucía

3D Visualization of geological structures using Python: the case study of the Palomeque sheets (SE, Spain)

The goal of this paper is the construction of computerized 3D visualization of geological structures. Several Python applications have been used to adapt the paper map-based geological classical information to numerical geological maps represented in HTML files. The models include a map with the stratigraphic and structural contacts and symbols, five serial vertical sections, and a geological block diagram, all with real topography. This block diagram made with 2D figures allows a 3D visualization. Palomeque area (Murcia region, southeastern Spain) has been used as a key-case. This area consists of a deformed Upper Cretaceous to Oligocene succession belonging to the Internal Zone Malaguide Complex. The main structure consists of two thrust-fold sheets forming an imbricate system, also affected by a set of strike-slip faults with a sinistral regime. The constructed maps show a good agreement with the published classical geological maps and cross-sections demonstrating the benefits of using these Python applications.Ministerio de Ciencia e Innovación: [Grant Number PID2020-114381GB-100]semigrupos.ugr.es from University of Granada and Research Groups FQM-343 of the Junta de AndalucíaResearch Groups and Projects of the Generalitat Valenciana-University of Alicant

Confidence of a k-Nearest Neighbors Python Algorithm for the 3D Visualization of Sedimentary Porous Media

In a previous paper, the authors implemented a machine learning k-nearest neighbors (KNN) algorithm and Python libraries to create two 3D interactive models of the stratigraphic architecture of the Quaternary onshore Llobregat River Delta (NE Spain) for groundwater exploration purposes. The main limitation of this previous paper was its lack of routines for evaluating the confidence of the 3D models. Building from the previous paper, this paper refines the programming code and introduces an additional algorithm to evaluate the confidence of the KNN predictions. A variant of the Similarity Ratio method was used to quantify the KNN prediction confidence. This variant used weights that were inversely proportional to the distance between each grain-size class and the inferred point to work out a value that played the role of similarity. While the KNN algorithm and Python libraries demonstrated their efficacy for obtaining 3D models of the stratigraphic arrangement of sedimentary porous media, the KNN prediction confidence verified the certainty of the 3D models. In the Llobregat River Delta, the KNN prediction confidence at each prospecting depth was a function of the available data density at that depth. As expected, the KNN prediction confidence decreased according to the decreasing data density at lower depths. The obtained average-weighted confidence was in the 0.44−0.53 range for gravel bodies at prospecting depths in the 12.7−72.4 m b.s.l. range and was in the 0.42−0.55 range for coarse sand bodies at prospecting depths in the 4.6−83.9 m b.s.l. range. In a couple of cases, spurious average-weighted confidences of 0.29 in one gravel body and 0.30 in one coarse sand body were obtained. These figures were interpreted as the result of the quite different weights of neighbors from different grain-size classes at short distances. The KNN algorithm confidence has proven its suitability for identifying these anomalous results in the supposedly well-depurated grain-size database used in this study. The introduced KNN algorithm confidence quantifies the reliability of the 3D interactive models, which is a necessary stage to make decisions in economic and environmental geology. In the Llobregat River Delta, this quantification clearly improves groundwater exploration predictability.Research Project PID2020-114381GB-100 of the Spanish Ministry of Science and Innovation, Research Project 101086497 of the Horizon Europe Framework Programme HORIZON-CL6-2022-GOVERNANCE-01-07, Research Groups and Projects of the Generalitat Valenciana from the University of Alicante (CTMA-IGA), and Research Groups FQM-343 and RNM-188 of the Junta de Andalucía

A Python Application for Visualizing an Imbricate Thrust System: Palomeque Duplex (SE, Spain)

This paper introduces a Python application for visualizing an imbricate thrust system. The application uses the traditional geologic information to create an HTML geological map with real topography and a set of geological cross-sections with the essential structural and stratigraphic elements. On the basis of the high geological knowledge gained during the last three decades, the Palomeque sheets affecting the Cenozoic Malaguide succession in the Internal Betic Zone (SE Spain) were selected to show the application. In this area, a Malaguide Cretaceous to Lower Miocene succession is deformed as an imbricate thrust system, with two thrusts forming a duplex, affected later by a set of faults with a main strike-slip kinematic. The modeled elements match well with the design of the stratigraphic intervals and the structures reported in recent scientific publications. This proves the good performance of this Python application for visualizing the structural and stratigraphic architecture. This kind of application could be a crucial stage for future groundwater, mining, and civil engineering management.Research Project PID2020-114381GB-100 of the Spanish Ministry of Science and Innovation, Research Groups and Projects of the Generalitat Valenciana from University of Alicante (CTMA-IGA), semigrupos.ugr.es from University of Granada and Research Groups FQM-343 of the Junta de Andalucía

A Python Application for Visualizing the 3D Stratigraphic Architecture of the Onshore Llobregat River Delta in NE Spain

This paper introduces a Python application for visualizing the 3D stratigraphic architecture of porous sedimentary media. The application uses the parameter granulometry deduced from borehole lithological records to create interactive 3D HTML models of essential stratigraphic elements. On the basis of the high density of boreholes and the subsequent geological knowledge gained during the last six decades, the Quaternary onshore Llobregat River Delta (LRD) in northeastern Spain was selected to show the application. The public granulometry dataset produced by the Water Authority of Catalonia from 433 boreholes in this strategic coastal groundwater body was clustered into the clay–silt, coarse sand, and gravel classes. Three interactive 3D HTML models were created. The first shows the location of the boreholes granulometry. The second includes the main gravel and coarse sand sedimentary bodies (lithosomes) associated with the identified three stratigraphic intervals, called lower (>50 m b.s.l.) in the distal LRD sector, middle (20–50 m b.s.l.) in the central LRD, and upper (<20mb.s.l.) spread over the entire LRD. The third deals with the basement (Pliocene and older rocks) top surface, which shows an overall steeped shape deepening toward the marine platform and local horsts, probably due to faulting. The modeled stratigraphic elements match well with the sedimentary structures reported in recent scientific publications. This proves the good performance of this incipient Python application for visualizing the 3D stratigraphic architecture, which is a crucial stage for groundwater management and governance.Spanish Government PID2020-114381GB-100Generalitat Valenciana from the University of Alicante (CTMAIGA)Junta de Andalucia FQM-343 RNM-18

A Python Application for Visualizing the 3D Stratigraphic Architecture of the Onshore Llobregat River Delta in NE Spain

This paper introduces a Python application for visualizing the 3D stratigraphic architecture of porous sedimentary media. The application uses the parameter granulometry deduced from borehole lithological records to create interactive 3D HTML models of essential stratigraphic elements. On the basis of the high density of boreholes and the subsequent geological knowledge gained during the last six decades, the Quaternary onshore Llobregat River Delta (LRD) in northeastern Spain was selected to show the application. The public granulometry dataset produced by the Water Authority of Catalonia from 433 boreholes in this strategic coastal groundwater body was clustered into the clay–silt, coarse sand, and gravel classes. Three interactive 3D HTML models were created. The first shows the location of the boreholes granulometry. The second includes the main gravel and coarse sand sedimentary bodies (lithosomes) associated with the identified three stratigraphic intervals, called lower (>50 m b.s.l.) in the distal LRD sector, middle (20–50 m b.s.l.) in the central LRD, and upper (<20 m b.s.l.) spread over the entire LRD. The third deals with the basement (Pliocene and older rocks) top surface, which shows an overall steeped shape deepening toward the marine platform and local horsts, probably due to faulting. The modeled stratigraphic elements match well with the sedimentary structures reported in recent scientific publications. This proves the good performance of this incipient Python application for visualizing the 3D stratigraphic architecture, which is a crucial stage for groundwater management and governance.Research Project PID2020-114381GB-100 of the Spanish Ministry of Science and Innovation, Research Groups and Projects of the Generalitat Valenciana from the University of Alicante (CTMA-IGA), and Research Groups FQM-343 and RNM-188 of the Junta de Andalucía

Web-based Stereoscopic Collaboration for Medical Visualization

Medizinische Volumenvisualisierung ist ein wertvolles Werkzeug zur Betrachtung von Volumen- daten in der medizinischen Praxis und Lehre. Eine interaktive, stereoskopische und kollaborative Darstellung in Echtzeit ist notwendig, um die Daten vollständig und im Detail verstehen zu können. Solche Visualisierung von hochauflösenden Daten ist jedoch wegen hoher Hardware- Anforderungen fast nur an speziellen Visualisierungssystemen möglich. Remote-Visualisierung wird verwendet, um solche Visualisierung peripher nutzen zu können. Dies benötigt jedoch fast immer komplexe Software-Deployments, wodurch eine universelle ad-hoc Nutzbarkeit erschwert wird. Aus diesem Sachverhalt ergibt sich folgende Hypothese: Ein hoch performantes Remote- Visualisierungssystem, welches für Stereoskopie und einfache Benutzbarkeit spezialisiert ist, kann für interaktive, stereoskopische und kollaborative medizinische Volumenvisualisierung genutzt werden. Die neueste Literatur über Remote-Visualisierung beschreibt Anwendungen, welche nur reine Webbrowser benötigen. Allerdings wird bei diesen kein besonderer Schwerpunkt auf die perfor- mante Nutzbarkeit von jedem Teilnehmer gesetzt, noch die notwendige Funktion bereitgestellt, um mehrere stereoskopische Präsentationssysteme zu bedienen. Durch die Bekanntheit von Web- browsern, deren einfach Nutzbarkeit und weite Verbreitung hat sich folgende spezifische Frage ergeben: Können wir ein System entwickeln, welches alle Aspekte unterstützt, aber nur einen reinen Webbrowser ohne zusätzliche Software als Client benötigt? Ein Proof of Concept wurde durchgeführt um die Hypothese zu verifizieren. Dazu gehörte eine Prototyp-Entwicklung, deren praktische Anwendung, deren Performanzmessung und -vergleich. Der resultierende Prototyp (CoWebViz) ist eines der ersten Webbrowser basierten Systeme, welches flüssige und interaktive Remote-Visualisierung in Realzeit und ohne zusätzliche Soft- ware ermöglicht. Tests und Vergleiche zeigen, dass der Ansatz eine bessere Performanz hat als andere ähnliche getestete Systeme. Die simultane Nutzung verschiedener stereoskopischer Präsen- tationssysteme mit so einem einfachen Remote-Visualisierungssystem ist zur Zeit einzigartig. Die Nutzung für die normalerweise sehr ressourcen-intensive stereoskopische und kollaborative Anatomieausbildung, gemeinsam mit interkontinentalen Teilnehmern, zeigt die Machbarkeit und den vereinfachenden Charakter des Ansatzes. Die Machbarkeit des Ansatzes wurde auch durch die erfolgreiche Nutzung für andere Anwendungsfälle gezeigt, wie z.B. im Grid-computing und in der Chirurgie