Watershed from propagated markers to interactive segmentation of objects in image sequences

Orientador: Roberto de Alencar LotufoTese (doutorado) - Universidade Estadual de Campinas, Faculdade de Engenharia Eletrica e de ComputaçãoResumo: Esta tese de doutorado apresenta um método interativo para segmentação de objetos em sequências de imagens - o watershed com marcadores propagados. Este método, uma combinação de segmentação morfológica clássica com estimação de movimento, possui quatro características importantes: i) interatividade, ii) generalidade, iii) resposta rápida e iv) edição manual progressiva. Watershed com marcadores propagados consiste em segmentar interativamente os objetos de interesse no primeiro quadro e, subsequentemente, computar e propagar marcadores para segmentar os mesmos objetos nos quadros seguintes. Além da proposta do paradigma do watershed com marcadores propagados, esta tese também apresenta variações para o paradigma citado e um novo benchmark para avaliação quantitativa de métodos interativos para segmentação de objetos em sequências de imagensAbstract: This doctorate thesis introduces an assisted method to object segmentation in image sequences - the watershed from propagated markers. This method, a combination of classical morphological segmentation withmotion estimation, has four important characteristics: i) interactivity, ii) generality, iii) rapid response and iv) progressive manual edition. Watershed from propagated markers consists in to segment interactively the objects of interest in the first frame and, subsequently, to compute and propagate markers in order to segment the same objects in the next frames. Besides the proposal of the watershed from propagated markers paradigm, this thesis also presents variaions to the cited paradigm and a new benchmark to quantitative evaluation of interactive object segmentation methods applied to image sequencesDoutoradoEngenharia de ComputaçãoDoutor em Engenharia Elétric

Biological image analysis

In biological research images are extensively used to monitor growth, dynamics and changes in biological specimen, such as cells or plants. Many of these images are used solely for observation or are manually annotated by an expert. In this dissertation we discuss several methods to automate the annotating and analysis of bio-images. Two large clusters of methods have been investigated and developed. A first set of methods focuses on the automatic delineation of relevant objects in bio-images, such as individual cells in microscopic images. Since these methods should be useful for many different applications, e.g. to detect and delineate different objects (cells, plants, leafs, ...) in different types of images (different types of microscopes, regular colour photographs, ...), the methods should be easy to adjust. Therefore we developed a methodology relying on probability theory, where all required parameters can easily be estimated by a biologist, without requiring any knowledge on the techniques used in the actual software. A second cluster of investigated techniques focuses on the analysis of shapes. By defining new features that describe shapes, we are able to automatically classify shapes, retrieve similar shapes from a database and even analyse how an object deforms through time

Semantic array programming in data-poor environments: assessing the interactions of shallow landslides and soil erosion

This research was conducted with the main objective to better integrate and quantify the role of water-induced shallow landslides within soil erosion processes, with a particular focus on data-poor conditions. To fulfil the objectives, catchment-scale studies on soil erosion by water and shallow landslides were conducted. A semi-quantitative method that combines heuristic, deterministic and probabilistic approaches is here proposed for a robust catchment-scale assessment of landslide susceptibility when available data are scarce. A set of different susceptibility-zonation maps was aggregated exploiting a modelling ensemble. Each susceptibility zonation has been obtained by applying heterogeneous statistical techniques such as logistic regression (LR), relative distance similarity (RDS), artificial neural network (ANN), and two different landslide-susceptibility techniques based on the infinite slope stability model. The good performance of the ensemble model, when compared with the single techniques, make this method suitable to be applied in data-poor areas where the lack of proper calibration and validation data can affect the application of physically based or conceptual models. A new modelling architecture to support the integrated assessment of soil erosion, by incorporating rainfall induced shallow landslides processes in data-poor conditions, was developed and tested in the study area. This proposed methodology is based on the geospatial semantic array programming paradigm. The integrated data-transformation model relies on a modular architecture, where the information flow among modules is constrained by semantic checks. By analysing modelling results within the study catchment, each year, on average, mass movements are responsible for a mean increase in the total soil erosion rate between 22 and 26% over the pre-failure estimate. The post-failure soil erosion rate in areas where landslides occurred is, on average, around 3.5 times the pre-failure value. These results confirm the importance to integrate landslide contribution into soil erosion modelling. Because the estimation of the changes in soil erosion from landslide activity is largely dependent on the quality of available datasets, this methodology broadens the possibility of a quantitative assessment of these effects in data-poor regions

ACARORUM CATALOGUS IX. Acariformes, Acaridida, Schizoglyphoidea (Schizoglyphidae), Histiostomatoidea (Histiostomatidae, Guanolichidae), Canestrinioidea (Canestriniidae, Chetochelacaridae, Lophonotacaridae, Heterocoptidae), Hemisarcoptoidea (Chaetodactylidae, Hyadesiidae, Algophagidae, Hemisarcoptidae, Carpoglyphidae, Winterschmidtiidae)

The 9th volume of the series Acarorum Catalogus contains lists of mites of 13 families, 225 genera and 1268 species of the superfamilies Schizoglyphoidea, Histiostomatoidea, Canestrinioidea and Hemisarcoptoidea. Most of these mites live on insects or other animals (as parasites, phoretic or commensals), some inhabit rotten plant material, dung or fungi. Mites of the families Chetochelacaridae and Lophonotacaridae are specialised to live with Myriapods (Diplopoda). The peculiar aquatic or intertidal mites of the families Hyadesidae and Algophagidae are also included.Publishe