Big Earth Data and Machine Learning for Sustainable and Resilient Agriculture

Big streams of Earth images from satellites or other platforms (e.g., drones and mobile phones) are becoming increasingly available at low or no cost and with enhanced spatial and temporal resolution. This thesis recognizes the unprecedented opportunities offered by the high quality and open access Earth observation data of our times and introduces novel machine learning and big data methods to properly exploit them towards developing applications for sustainable and resilient agriculture. The thesis addresses three distinct thematic areas, i.e., the monitoring of the Common Agricultural Policy (CAP), the monitoring of food security and applications for smart and resilient agriculture. The methodological innovations of the developments related to the three thematic areas address the following issues: i) the processing of big Earth Observation (EO) data, ii) the scarcity of annotated data for machine learning model training and iii) the gap between machine learning outputs and actionable advice. This thesis demonstrated how big data technologies such as data cubes, distributed learning, linked open data and semantic enrichment can be used to exploit the data deluge and extract knowledge to address real user needs. Furthermore, this thesis argues for the importance of semi-supervised and unsupervised machine learning models that circumvent the ever-present challenge of scarce annotations and thus allow for model generalization in space and time. Specifically, it is shown how merely few ground truth data are needed to generate high quality crop type maps and crop phenology estimations. Finally, this thesis argues there is considerable distance in value between model inferences and decision making in real-world scenarios and thereby showcases the power of causal and interpretable machine learning in bridging this gap.Comment: Phd thesi

Analyzing the Adoption, Cropping Rotation, and Impact of Winter Cover Crops in the Mississippi Alluvial Plain (MAP) Region through Remote Sensing Technologies

This dissertation explores the application of remote sensing technologies in conservation agriculture, specifically focusing on identifying and mapping winter cover crops and assessing voluntary cover crop adoption and cropping patterns in the Arkansas portion of the Mississippi Alluvial Plain (MAP). In the first chapter, a systematic review using the PRISMA methodology examines the last 30 years of thematic research, development, and trends in remote sensing applied to conservation agriculture from a global perspective. The review uncovers a growing interest in remote sensing-based research in conservation agriculture and emphasizes the necessity for further studies dedicated to conservation practices. Among the 68 articles examined, 94% of studies utilized a pixel-based classification method, while only 6% employed an object-based approach. The analysis also revealed a thematic shift over time, with tillage practices being extensively studied before 2005, followed by a focus on crop residue from 2004 to 2012. From 2012 to 2020, there was a renewed emphasis on cover crops research. These findings highlight the evolving research landscape and provide insights into the trends within remote sensing-based conservation agriculture studies. The second chapter presents a methodological framework for identifying and mapping winter cover crops. The framework utilizes the Google Earth Engine (GEE) and a Random Forest (RF) classifier with time series data from Landsat 8 satellite. Results demonstrate a high classification accuracy (97.7%) and a significant increase (34%) in model-predicted cover crop adoption over the study period between 2013 and 2019. Additionally, the study showcases the use of multi-year datasets to efficiently map the growing season\u27s length and cover crops\u27 phenological characteristics. The third chapter assesses the voluntary adoption of winter cover crops and cropping patterns in the MAP region. Remote sensing technologies, USDA-NRCS government cover crop data sources, and the USDA Cropland Data Layer (CDL) are employed to identify cover crop locations, analyze county-wide voluntary adoption, and cropping rotations. The result showed a 5.33% increase in the overall voluntary adoption of cover crops in the study region between 2013 and 2019. The findings also indicate a growing trend in cover crop adoption, with soybean-cover crop rotations being prominent. This dissertation enhances our understanding of the role of remote sensing in conservation agriculture with a particular focus on winter cover crops. These insights are valuable for policymakers, stakeholders, and researchers seeking to promote sustainable agricultural practices and increased cover crop adoption. The study also underscores the significance of integrating remote sensing technologies into agricultural decision-making processes and highlights the importance of collaboration among policymakers, researchers, and producers. By leveraging the capabilities of remote sensing, it will enhance conservation agriculture contribution to long-term environmental sustainability and agricultural resilience. Keywords: Remote sensing technologies, Conservation agriculture, Winter cover crops, Voluntary adoption, Cropping patterns, Sustainable agricultural practice

Analyzing the Adoption, Cropping Rotation, and Impact of Winter Cover Crops in the Mississippi Alluvial Plain (MAP) Region through Remote Sensing Technologies

This dissertation explores the application of remote sensing technologies in conservation agriculture, specifically focusing on identifying and mapping winter cover crops and assessing voluntary cover crop adoption and cropping patterns in the Arkansas portion of the Mississippi Alluvial Plain (MAP). In the first chapter, a systematic review using the PRISMA methodology examines the last 30 years of thematic research, development, and trends in remote sensing applied to conservation agriculture from a global perspective. The review uncovers a growing interest in remote sensing-based research in conservation agriculture and emphasizes the necessity for further studies dedicated to conservation practices. Among the 68 articles examined, 94% of studies utilized a pixel-based classification method, while only 6% employed an object-based approach. The analysis also revealed a thematic shift over time, with tillage practices being extensively studied before 2005, followed by a focus on crop residue from 2004 to 2012. From 2012 to 2020, there was a renewed emphasis on cover crops research. These findings highlight the evolving research landscape and provide insights into the trends within remote sensing-based conservation agriculture studies. The second chapter presents a methodological framework for identifying and mapping winter cover crops. The framework utilizes the Google Earth Engine (GEE) and a Random Forest (RF) classifier with time series data from Landsat 8 satellite. Results demonstrate a high classification accuracy (97.7%) and a significant increase (34%) in model-predicted cover crop adoption over the study period between 2013 and 2019. Additionally, the study showcases the use of multi-year datasets to efficiently map the growing season\u27s length and cover crops\u27 phenological characteristics. The third chapter assesses the voluntary adoption of winter cover crops and cropping patterns in the MAP region. Remote sensing technologies, USDA-NRCS government cover crop data sources, and the USDA Cropland Data Layer (CDL) are employed to identify cover crop locations, analyze county-wide voluntary adoption, and cropping rotations. The result showed a 5.33% increase in the overall voluntary adoption of cover crops in the study region between 2013 and 2019. The findings also indicate a growing trend in cover crop adoption, with soybean-cover crop rotations being prominent. This dissertation enhances our understanding of the role of remote sensing in conservation agriculture with a particular focus on winter cover crops. These insights are valuable for policymakers, stakeholders, and researchers seeking to promote sustainable agricultural practices and increased cover crop adoption. The study also underscores the significance of integrating remote sensing technologies into agricultural decision-making processes and highlights the importance of collaboration among policymakers, researchers, and producers. By leveraging the capabilities of remote sensing, it will enhance conservation agriculture contribution to long-term environmental sustainability and agricultural resilience. Keywords: Remote sensing technologies, Conservation agriculture, Winter cover crops, Voluntary adoption, Cropping patterns, Sustainable agricultural practice

Mapping Cropland Abandonment in the Aral Sea Basin with MODIS Time Series

Cropland abandonment is globally widespread and has strong repercussions for regional food security and the environment. Statistics suggest that one of the hotspots of abandoned cropland is located in the drylands of the Aral Sea Basin (ASB), which covers parts of post-Soviet Central Asia, Afghanistan and Iran. To date, the exact spatial and temporal extents of abandoned cropland remain unclear, which hampers land-use planning. Abandoned land is a potentially valuable resource for alternative land uses. Here, we mapped the abandoned cropland in the drylands of the ASB with a time series of the Normalized Difference Vegetation Index (NDVI) from the Moderate Resolution Imaging Spectroradiometer (MODIS) from 2003–2016. To overcome the restricted ability of a single classifier to accurately map land-use classes across large areas and agro-environmental gradients, “stratum-specific” classifiers were calibrated and classification results were fused based on a locally weighted decision fusion approach. Next, the agro-ecological suitability of abandoned cropland areas was evaluated. The stratum-specific classification approach yielded an overall accuracy of 0.879, which was significantly more accurate ( p < 0.05) than a “global” classification without stratification, which had an accuracy of 0.811. In 2016, the classification results showed that 13% (1.15 Mha) of the observed irrigated cropland in the ASB was idle (abandoned). Cropland abandonment occurred mostly in the Amudarya and Syrdarya downstream regions and was associated with degraded land and areas prone to water stress. Despite the almost twofold population growth and increasing food demand in the ASB area from 1990 to 2016, abandoned cropland was also located in areas with high suitability for farming. The map of abandoned cropland areas provides a novel basis for assessing the causes leading to abandoned cropland in the ASB. This contributes to assessing the suitability of abandoned cropland for food or bioenergy production, carbon storage, or assessing the environmental trade-offs and social constraints of recultivation

Symposium franco-chinois de télédétection quantitative en agronomie et environnement. Bilan et perspectives de collaboration. Rapport de mission (26 au 30 mars 2000)

Ce rapport présente les principaux résultats d'un Symposium en Télédétection entre des équipes de chercheurs de l'INRA, du CIRAD, de l'Université de Lille et leurs homologues chinois de l'Institute of Remote Sensing Applications (IRSA) of Chinese Academy of Sciences (CAS), et du National Satellite Meteorological Center (NSMC). Les perspectives d'un programme de collaboration sont présentées avec deux axes majeurs correspondant à deux niveaux d'approche, régional et local en agriculture de précision. (Résumé d'auteur

A Multi-Sensor Phenotyping System: Applications on Wheat Height Estimation and Soybean Trait Early Prediction

Phenotyping is an essential aspect for plant breeding research since it is the foundation of the plant selection process. Traditional plant phenotyping methods such as measuring and recording plant traits manually can be inefficient, laborious and prone to error. With the help of modern sensing technologies, high-throughput field phenotyping is becoming popular recently due to its ability of sensing various crop traits non-destructively with high efficiency. A multi-sensor phenotyping system equipped with red-green-blue (RGB) cameras, radiometers, ultrasonic sensors, spectrometers, a global positioning system (GPS) receiver, a pyranometer, a temperature and relative humidity probe and a light detection and ranging (LiDAR) was first constructed, and a LabVIEW program was developed for sensor controlling and data acquisition. Two studies were conducted focusing on system performance examination and data exploration respectively. The first study was to compare wheat height measurements from ultrasonic sensor and LiDAR. Canopy heights of 100 wheat plots were estimated five times over the season by the ground phenotyping system, and the results were compared to manual measurements. Overall, LiDAR provided the better estimations with root mean square error (RMSE) of 0.05 m and R2 of 0.97. Ultrasonic sensor did not perform well due to the style of our application. In conclusion LiDAR was recommended as a reliable method for wheat height evaluation. The second study was to explore the possibility of early predicting soybean traits through color and texture features of canopy images. Six thousand three hundred and eighty-three RGB images were captured at V4/V5 growth stage over 5667 soybean plots growing at four locations. One hundred and forty color features and 315 gray-level co-occurrence matrix (GLCM)-based texture features were derived from each image. Another two variables were also introduced to account for the location and timing difference between images. Cubist and Random Forests were used for regression and classification modelling respectively. Yield (RMSE=9.82, R2=0.68), Maturity (RMSE=3.70, R2=0.76) and Seed Size (RMSE=1.63, R2=0.53) were identified as potential soybean traits that might be early-predictable. Advisor: Yufeng G

A Multi-Sensor Phenotyping System: Applications on Wheat Height Estimation and Soybean Trait Early Prediction

Phenotyping is an essential aspect for plant breeding research since it is the foundation of the plant selection process. Traditional plant phenotyping methods such as measuring and recording plant traits manually can be inefficient, laborious and prone to error. With the help of modern sensing technologies, high-throughput field phenotyping is becoming popular recently due to its ability of sensing various crop traits non-destructively with high efficiency. A multi-sensor phenotyping system equipped with red-green-blue (RGB) cameras, radiometers, ultrasonic sensors, spectrometers, a global positioning system (GPS) receiver, a pyranometer, a temperature and relative humidity probe and a light detection and ranging (LiDAR) was first constructed, and a LabVIEW program was developed for sensor controlling and data acquisition. Two studies were conducted focusing on system performance examination and data exploration respectively. The first study was to compare wheat height measurements from ultrasonic sensor and LiDAR. Canopy heights of 100 wheat plots were estimated five times over the season by the ground phenotyping system, and the results were compared to manual measurements. Overall, LiDAR provided the better estimations with root mean square error (RMSE) of 0.05 m and R2 of 0.97. Ultrasonic sensor did not perform well due to the style of our application. In conclusion LiDAR was recommended as a reliable method for wheat height evaluation. The second study was to explore the possibility of early predicting soybean traits through color and texture features of canopy images. Six thousand three hundred and eighty-three RGB images were captured at V4/V5 growth stage over 5667 soybean plots growing at four locations. One hundred and forty color features and 315 gray-level co-occurrence matrix (GLCM)-based texture features were derived from each image. Another two variables were also introduced to account for the location and timing difference between images. Cubist and Random Forests were used for regression and classification modelling respectively. Yield (RMSE=9.82, R2=0.68), Maturity (RMSE=3.70, R2=0.76) and Seed Size (RMSE=1.63, R2=0.53) were identified as potential soybean traits that might be early-predictable. Advisor: Yufeng G

Agroforestry Opportunities for Enhancing Resilience to Climate Change in Rainfed Areas,

Not AvailableAgroforestry provides a unique opportunity to achieve the objectives of enhancing the productivity and improving the soil quality. Tree systems can also play an important role towards adapting to the climate variability and important carbon sinks which helps to decrease the pressure on natural forests. Realizing the importance of the agroforestry in meeting the twin objectives of mitigation and adaptation to climate change as well as making rainfed agriculture more climate resilient, the ICAR-CRIDA has taken up the challenge in pursuance of National Agroforestry Policy 2014, in preparing a book on Agroforestry Opportunities for Enhancing Resilience to Climate Change in Rainfed Areas at ICAR-CRIDA to sharpen the skills of all stakeholders at national, state and district level in rainfed areas to increase agricultural productivity in response to climate changeNot Availabl

Impact of temporal changes of land use on surface Run-off A case study on musi basin using soil and water assessment tool (SWAT)

Land and water are the two most vital natural resources of the world. Proper planning and management of these two most vital natural resources is, therefore, of utmost necessity. For proper planning and efficient utilization of the land and water resources it is necessary to understand the hydrological cycle and estimate the hydrological parameters. In the present study SWAT2012 (Soil and Water Assessment Tool, ArcSWAT10.2.2), a physical based semi distributed hydrologic model having an interface with ArcGIS 10.2.2, GIS software was applied for Musi Basin, a sub-basin of river Krishna, covering an area of 11268.54 sq.km in order to model the various hydrological components and to assess the impact of land use/land cover on the surface flow. In order to study the impact of land use/land cover on surface runoff, simulations were carried out for the crop periods of kharif 2005-06 and kharif 2010-11 using the same precipitation file. Results indicated that with an increase in irrigated land and increase in urban land, during the period from 2005 to 2010 surface runoff has increased by 8.47mm (18.6% to 19.6% of precipitation) showing that the land use/land cover has an impact on the hydrological regime. Then the simulations were carried out for the land use of 2005-06 kharif with and without irrigation operation for a time period of 35 years (1979-2013) and the simulations showed that the surface runoff was more for the model under irrigation by 7.6%. Runoff had increased from 24.8% to 32.4 % of precipitation. These results clearly show how land use changes and agricultural management practices impact hydrological parameters like runoff