5 research outputs found
Task-based Augmented Contour Trees with Fibonacci Heaps
This paper presents a new algorithm for the fast, shared memory, multi-core
computation of augmented contour trees on triangulations. In contrast to most
existing parallel algorithms our technique computes augmented trees, enabling
the full extent of contour tree based applications including data segmentation.
Our approach completely revisits the traditional, sequential contour tree
algorithm to re-formulate all the steps of the computation as a set of
independent local tasks. This includes a new computation procedure based on
Fibonacci heaps for the join and split trees, two intermediate data structures
used to compute the contour tree, whose constructions are efficiently carried
out concurrently thanks to the dynamic scheduling of task parallelism. We also
introduce a new parallel algorithm for the combination of these two trees into
the output global contour tree. Overall, this results in superior time
performance in practice, both in sequential and in parallel thanks to the
OpenMP task runtime. We report performance numbers that compare our approach to
reference sequential and multi-threaded implementations for the computation of
augmented merge and contour trees. These experiments demonstrate the run-time
efficiency of our approach and its scalability on common workstations. We
demonstrate the utility of our approach in data segmentation applications
Topological Deep Learning: Going Beyond Graph Data
Topological deep learning is a rapidly growing field that pertains to the
development of deep learning models for data supported on topological domains
such as simplicial complexes, cell complexes, and hypergraphs, which generalize
many domains encountered in scientific computations. In this paper, we present
a unifying deep learning framework built upon a richer data structure that
includes widely adopted topological domains.
Specifically, we first introduce combinatorial complexes, a novel type of
topological domain. Combinatorial complexes can be seen as generalizations of
graphs that maintain certain desirable properties. Similar to hypergraphs,
combinatorial complexes impose no constraints on the set of relations. In
addition, combinatorial complexes permit the construction of hierarchical
higher-order relations, analogous to those found in simplicial and cell
complexes. Thus, combinatorial complexes generalize and combine useful traits
of both hypergraphs and cell complexes, which have emerged as two promising
abstractions that facilitate the generalization of graph neural networks to
topological spaces.
Second, building upon combinatorial complexes and their rich combinatorial
and algebraic structure, we develop a general class of message-passing
combinatorial complex neural networks (CCNNs), focusing primarily on
attention-based CCNNs. We characterize permutation and orientation
equivariances of CCNNs, and discuss pooling and unpooling operations within
CCNNs in detail.
Third, we evaluate the performance of CCNNs on tasks related to mesh shape
analysis and graph learning. Our experiments demonstrate that CCNNs have
competitive performance as compared to state-of-the-art deep learning models
specifically tailored to the same tasks. Our findings demonstrate the
advantages of incorporating higher-order relations into deep learning models in
different applications