A novel artifact reconstruction method applied to blood pressure signals

Peer ReviewedPostprint (published version

Differential width discrimination task for active and passive tactile discrimination in humans

The neurophysiological basis of width discrimination has been extensively studied in rodents and has shown that active and passive tactile discrimination engage fundamentally different neural networks. Although previous studies have analyzed active and passive tactile processing in humans, little is known about the neurophysiological basis of width discrimination in humans. Here we present a width discrimination task for humans that reproduces the main features of the width discrimination task previously developed for rodents. The task required subjects to actively or passively sample two movable bars forming a “narrow” or “wide” aperture. Subjects were then required to press one of two buttons to indicate if the bar width was “narrow” or “wide”. Behavioral testing showed that subjects were capable of discriminating between wide or narrow apertures up to distances of 0.1 cm. Electroencephalography (EEG) recordings further suggested distinct topographic maps for active and passive versions of the task during the period associated with the aperture discrimination. These results indicate that the Human Differential Width Discrimination Task is a valuable tool to describe the behavioral characteristics and neurophysiological basis of tactile processing. • Active and passive width discrimination has been extensively studied in rodents but not in humans. • Human subjects were capable of discriminating aperture widths of 0.1 cm. • Electroencephalography recordings showed that active and passive versions of the task were associated with different topographic maps.The authors would like to acknowledge the support of the following institutions: Fundação para a Ciência e a Tecnologia IF/00098/2015 (MPV), UID/CEC/00319/2019 (EB), BIAL Foundation 95/2016 (MPV, MK, CPV), Santa Casa da Misericórdia de Lisboa MC-12-18 (AVP, CPV, EB)

Wavelet Based Denoising of the Simulated Chest Wall Motion Detected by SFCW Radar

Low power and compact radars have emerged with the development of electronic technology. This has enabled the use of radars in indoor environments and the realization of many applications. The detection, tracking and classification of human movements by radar are among the remarkable applications. Contactless detection of human vital signs improves the quality of life of patients being kept under observation and facilitates the work of experts. In this study, it was simulated that the movement of the chest wall was modeled and detected by the SFCW radar. Gaussian, Rician and uniformly distributed random noise types were added to the modeled chest motion at different levels. The noisy signal obtained at the receiver is denoised with different mother wavelet functions and the performances of these functions are presented comparatively

WAVELET TRANSFORMS FOR EEG SIGNAL DENOISING AND DECOMPOSITION

EEG signal analysis is difficult because there are so many unwanted impulses from non-cerebral sources. Presently, methods for eliminating noise through selective frequency filtering are afflicted with a notable deprivation of EEG information. Therefore, even if the noise is decreased, the signal's uniqueness should be preserved, and decomposition of the signal should be more accurate for feature extraction in order to facilitate the classification of diseases. This step makes the diagnosis faster. In this study, three types of wavelet transforms were applied: Discrete Wavelet Transform (DWT), Wavelet Packet Transform (WPT), and Stationary Wavelet Transform (SWT), with three mother functions: Haar, Symlet2, and Coiflet2. Three parameters were used to evaluate the performance: Signal-to-Noise Ratio (SNR), Mean Square Error (MSE), and Peak Signal-to-Noise Ratio (PSNR). Most of the higher values of SNR and PSNR were 27.3189 and 40.019, respectively, and the lowest value of MSE was 5.0853 when using Symlet2-SWT level four. To decompose the signal, we relied on the best filter used in the denoising process and applied four methods: DWT, Maximal Overlap DWTs (MODWT), Empirical Mode Decomposition (EMD), and Variational Mode Decomposition (VMD). The comparison has been made between the four methods based on three metrics: energy, correlation coefficient, and distances between the Power Spectral Density (PSD), where the highest value of energy was 5.09E+08 and the lowest value of the PSD was -1.2596 when using EMD

Adaptable and Robust EEG Bad Channel Detection Using Local Outlier Factor (LOF)

Electroencephalogram (EEG) data are typically affected by artifacts. The detection and removal of bad channels (i.e., with poor signal-to-noise ratio) is a crucial initial step. EEG data acquired from different populations require different cleaning strategies due to the inherent differences in the data quality, the artifacts' nature, and the employed experimental paradigm. To deal with such differences, we propose a robust EEG bad channel detection method based on the Local Outlier Factor (LOF) algorithm. Unlike most existing bad channel detection algorithms that look for the global distribution of channels, LOF identifies bad channels relative to the local cluster of channels, which makes it adaptable to any kind of EEG. To test the performance and versatility of the proposed algorithm, we validated it on EEG acquired from three populations (newborns, infants, and adults) and using two experimental paradigms (event-related and frequency-tagging). We found that LOF can be applied to all kinds of EEG data after calibrating its main hyperparameter: the LOF threshold. We benchmarked the performance of our approach with the existing state-of-the-art (SoA) bad channel detection methods. We found that LOF outperforms all of them by improving the F1 Score, our chosen performance metric, by about 40% for newborns and infants and 87.5% for adults

A general dual-pathway network for EEG denoising

IntroductionScalp electroencephalogram (EEG) analysis and interpretation are crucial for tracking and analyzing brain activity. The collected scalp EEG signals, however, are weak and frequently tainted with various sorts of artifacts. The models based on deep learning provide comparable performance with that of traditional techniques. However, current deep learning networks applied to scalp EEG noise reduction are large in scale and suffer from overfitting.MethodsHere, we propose a dual-pathway autoencoder modeling framework named DPAE for scalp EEG signal denoising and demonstrate the superiority of the model on multi-layer perceptron (MLP), convolutional neural network (CNN) and recurrent neural network (RNN), respectively. We validate the denoising performance on benchmark scalp EEG artifact datasets.ResultsThe experimental results show that our model architecture not only significantly reduces the computational effort but also outperforms existing deep learning denoising algorithms in root relative mean square error (RRMSE)metrics, both in the time and frequency domains.DiscussionThe DPAE architecture does not require a priori knowledge of the noise distribution nor is it limited by the network layer structure, which is a general network model oriented toward blind source separation

AUTOMATED ARTIFACT REMOVAL AND DETECTION OF MILD COGNITIVE IMPAIRMENT FROM SINGLE CHANNEL ELECTROENCEPHALOGRAPHY SIGNALS FOR REAL-TIME IMPLEMENTATIONS ON WEARABLES

Electroencephalogram (EEG) is a technique for recording asynchronous activation of neuronal firing inside the brain with non-invasive scalp electrodes. EEG signal is well studied to evaluate the cognitive state, detect brain diseases such as epilepsy, dementia, coma, autism spectral disorder (ASD), etc. In this dissertation, the EEG signal is studied for the early detection of the Mild Cognitive Impairment (MCI). MCI is the preliminary stage of Dementia that may ultimately lead to Alzheimers disease (AD) in the elderly people. Our goal is to develop a minimalistic MCI detection system that could be integrated to the wearable sensors. This contribution has three major aspects: 1) cleaning the EEG signal, 2) detecting MCI, and 3) predicting the severity of the MCI using the data obtained from a single-channel EEG electrode. Artifacts such as eye blink activities can corrupt the EEG signals. We investigate unsupervised and effective removal of ocular artifact (OA) from single-channel streaming raw EEG data. Wavelet transform (WT) decomposition technique was systematically evaluated for effectiveness of OA removal for a single-channel EEG system. Discrete Wavelet Transform (DWT) and Stationary Wavelet Transform (SWT), is studied with four WT basis functions: haar, coif3, sym3, and bior4.4. The performance of the artifact removal algorithm was evaluated by the correlation coefficients (CC), mutual information (MI), signal to artifact ratio (SAR), normalized mean square error (NMSE), and time-frequency analysis. It is demonstrated that WT can be an effective tool for unsupervised OA removal from single channel EEG data for real-time applications.For the MCI detection from the clean EEG data, we collected the scalp EEG data, while the subjects were stimulated with five auditory speech signals. We extracted 590 features from the Event-Related Potential (ERP) of the collected EEG signals, which included time and spectral domain characteristics of the response. The top 25 features, ranked by the random forest method, were used for classification models to identify subjects with MCI. Robustness of our model was tested using leave-one-out cross-validation while training the classifiers. Best results (leave-one-out cross-validation accuracy 87.9%, sensitivity 84.8%, specificity 95%, and F score 85%) were obtained using support vector machine (SVM) method with Radial Basis Kernel (RBF) (sigma = 10, cost = 102). Similar performances were also observed with logistic regression (LR), further validating the results. Our results suggest that single-channel EEG could provide a robust biomarker for early detection of MCI. We also developed a single channel Electro-encephalography (EEG) based MCI severity monitoring algorithm by generating the Montreal Cognitive Assessment (MoCA) scores from the features extracted from EEG. We performed multi-trial and single-trail analysis for the algorithm development of the MCI severity monitoring. We studied Multivariate Regression (MR), Ensemble Regression (ER), Support Vector Regression (SVR), and Ridge Regression (RR) for multi-trial and deep neural regression for the single-trial analysis. In the case of multi-trial, the best result was obtained from the ER. In our single-trial analysis, we constructed the time-frequency image from each trial and feed it to the convolutional deep neural network (CNN). Performance of the regression models was evaluated by the RMSE and the residual analysis. We obtained the best accuracy with the deep neural regression method

Artifact Removal Methods in EEG Recordings: A Review

To obtain the correct analysis of electroencephalogram (EEG) signals, non-physiological and physiological artifacts should be removed from EEG signals. This study aims to give an overview on the existing methodology for removing physiological artifacts, e.g., ocular, cardiac, and muscle artifacts. The datasets, simulation platforms, and performance measures of artifact removal methods in previous related research are summarized. The advantages and disadvantages of each technique are discussed, including regression method, filtering method, blind source separation (BSS), wavelet transform (WT), empirical mode decomposition (EMD), singular spectrum analysis (SSA), and independent vector analysis (IVA). Also, the applications of hybrid approaches are presented, including discrete wavelet transform - adaptive filtering method (DWT-AFM), DWT-BSS, EMD-BSS, singular spectrum analysis - adaptive noise canceler (SSA-ANC), SSA-BSS, and EMD-IVA. Finally, a comparative analysis for these existing methods is provided based on their performance and merits. The result shows that hybrid methods can remove the artifacts more effectively than individual methods

Extraction of SSVEPs-Based Inherent Fuzzy Entropy Using a Wearable Headband EEG in Migraine Patients

© 1993-2012 IEEE. Inherent fuzzy entropy is an objective measurement of electroencephalography (EEG) complexity reflecting the robustness of brain systems. In this study, we present a novel application of multiscale relative inherent fuzzy entropy using repetitive steady-state visual evoked potentials (SSVEPs) to investigate EEG complexity change between two migraine phases, i.e., interictal (baseline) and preictal (before migraine attacks) phases. We used a wearable headband EEG device with O1, Oz, O2, and Fpz electrodes to collect EEG signals from 80 participants [40 migraine patients and 40 healthy controls (HCs)] under the following two conditions: During resting state and SSVEPs with five 15-Hz photic stimuli. We found a significant enhancement in occipital EEG entropy with increasing stimulus times in both HCs and patients in the interictal phase, but a reverse trend in patients in the preictal phase. In the 1st SSVEP, occipital EEG entropy of the HCs was significantly lower than that of patents in the preictal phase (FDR-adjusted p < 0.05). Regarding the transitional variance of EEG entropy between the 1st and 5th SSVEPs, patients in the preictal phase exhibited significantly lower values than patients in the interictal phase (FDR-adjusted p < 0.05). Furthermore, in the classification model, the AdaBoost ensemble learning showed an accuracy of 81 pm 6%and area under the curve of 0.87 for classifying interictal and preictal phases. In contrast, there were no differences in EEG entropy among groups or sessions by using other competing entropy models, including approximate entropy, sample entropy, and fuzzy entropy on the same dataset. In conclusion, inherent fuzzy entropy offers novel applications in visual stimulus environments and may have the potential to provide a preictal alert to migraine patients