The OTree: multidimensional indexing with efficient data sampling for HPC

Spatial big data is considered an essential trend in future scientific and business applications. Indeed, research instruments, medical devices, and social networks generate hundreds of petabytes of spatial data per year. However, many authors have pointed out that the lack of specialized frameworks for multidimensional Big Data is limiting possible applications and precluding many scientific breakthroughs. Paramount in achieving High-Performance Data Analytics is to optimize and reduce the I/O operations required to analyze large data sets. To do so, we need to organize and index the data according to its multidimensional attributes. At the same time, to enable fast and interactive exploratory analysis, it is vital to generate approximate representations of large datasets efficiently. In this paper, we propose the Outlook Tree (or OTree), a novel Multidimensional Indexing with efficient data Sampling (MIS) algorithm. The OTree enables exploratory analysis of large multidimensional datasets with arbitrary precision, a vital missing feature in current distributed data management solutions. Our algorithm reduces the indexing overhead and achieves high performance even for write-intensive HPC applications. Indeed, we use the OTree to store the scientific results of a study on the efficiency of drug inhalers. Then we compare the OTree implementation on Apache Cassandra, named Qbeast, with PostgreSQL and plain storage. Lastly, we demonstrate that our proposal delivers better performance and scalability.Peer ReviewedPostprint (author's final draft

Indexability, concentration, and VC theory

Degrading performance of indexing schemes for exact similarity search in high dimensions has long since been linked to histograms of distributions of distances and other 1-Lipschitz functions getting concentrated. We discuss this observation in the framework of the phenomenon of concentration of measure on the structures of high dimension and the Vapnik-Chervonenkis theory of statistical learning.Comment: 17 pages, final submission to J. Discrete Algorithms (an expanded, improved and corrected version of the SISAP'2010 invited paper, this e-print, v3

A Formal Framework for Linguistic Annotation

`Linguistic annotation' covers any descriptive or analytic notations applied to raw language data. The basic data may be in the form of time functions -- audio, video and/or physiological recordings -- or it may be textual. The added notations may include transcriptions of all sorts (from phonetic features to discourse structures), part-of-speech and sense tagging, syntactic analysis, `named entity' identification, co-reference annotation, and so on. While there are several ongoing efforts to provide formats and tools for such annotations and to publish annotated linguistic databases, the lack of widely accepted standards is becoming a critical problem. Proposed standards, to the extent they exist, have focussed on file formats. This paper focuses instead on the logical structure of linguistic annotations. We survey a wide variety of existing annotation formats and demonstrate a common conceptual core, the annotation graph. This provides a formal framework for constructing, maintaining and searching linguistic annotations, while remaining consistent with many alternative data structures and file formats.Comment: 49 page

Horizontal Integration of Warfighter Intelligence Data: A Shared Semantic Resource for the Intelligence Community

We describe a strategy that is being used for the horizontal integration of warfighter intelligence data within the framework of the US Army’s Distributed Common Ground System Standard Cloud (DSC) initiative. The strategy rests on the development of a set of ontologies that are being incrementally applied to bring about what we call the ‘semantic enhancement’ of data models used within each intelligence discipline. We show how the strategy can help to overcome familiar tendencies to stovepiping of intelligence data, and describe how it can be applied in an agile fashion to new data resources in ways that address immediate needs of intelligence analysts

Memory vectors for similarity search in high-dimensional spaces

We study an indexing architecture to store and search in a database of high-dimensional vectors from the perspective of statistical signal processing and decision theory. This architecture is composed of several memory units, each of which summarizes a fraction of the database by a single representative vector. The potential similarity of the query to one of the vectors stored in the memory unit is gauged by a simple correlation with the memory unit's representative vector. This representative optimizes the test of the following hypothesis: the query is independent from any vector in the memory unit vs. the query is a simple perturbation of one of the stored vectors. Compared to exhaustive search, our approach finds the most similar database vectors significantly faster without a noticeable reduction in search quality. Interestingly, the reduction of complexity is provably better in high-dimensional spaces. We empirically demonstrate its practical interest in a large-scale image search scenario with off-the-shelf state-of-the-art descriptors.Comment: Accepted to IEEE Transactions on Big Dat

Probabilistic Skyline Queries over Uncertain Moving Objects

Data uncertainty inherently exists in a large number of applications due to factors such as limitations of measuring equipments, update delay, and network bandwidth. Recently, modeling and querying uncertain data have attracted considerable attention from the database community. However, how to perform advanced analysis on uncertain data remains an interesting question. In this paper, we focus on the execution of skyline computation over uncertain moving objects. We propose a novel probabilistic skyline model where an uncertain object may take a probability to be in the skyline at a certain time point, therefore a p-t-skyline contains those moving objects whose skyline probabilities are at least p at time point t. Computing probabilistic skyline over a large number of uncertain moving objects is a daunting task in practice. In order to efficiently compute the probabilistic skyline query, we propose a discrete-and-conquer strategy, which follows the sampling-bounding-pruning-refining procedure. To further reduce the skyline computation cost, we propose an enhanced framework that is based on a multi-dimensional indexing structure combined with the discrete-and-conquer strategy. Through extensive experiments with synthetic datasets, we show that the framework can efficiently support skyline queries over uncertain moving object and is scalable on large data sets