Abdominal Tumor Characterization and Recognition Using Superior-Order Cooccurrence Matrices, Based on Ultrasound Images

The noninvasive diagnosis of the malignant tumors is an important issue in research nowadays. Our purpose is to elaborate computerized, texture-based methods for performing computer-aided characterization and automatic diagnosis of these tumors, using only the information from ultrasound images. In this paper, we considered some of the most frequent abdominal malignant tumors: the hepatocellular carcinoma and the colonic tumors. We compared these structures with the benign tumors and with other visually similar diseases. Besides the textural features that proved in our previous research to be useful in the characterization and recognition of the malignant tumors, we improved our method by using the grey level cooccurrence matrix and the edge orientation cooccurrence matrix of superior order. As resulted from our experiments, the new textural features increased the malignant tumor classification performance, also revealing visual and physical properties of these structures that emphasized the complex, chaotic structure of the corresponding tissue

The Role of the Superior Order GLCM in the Characterization and Recognition of the Liver Tumors from Ultrasound Images

The hepatocellular carcinoma (HCC) is the most frequent malignant liver tumor. It often has a similar visual aspect with the cirrhotic parenchyma on which it evolves and with the benign liver tumors. The golden standard for HCC diagnosis is the needle biopsy, but this is an invasive, dangerous method. We aim to develop computerized,noninvasive techniques for the automatic diagnosis of HCC, based on information obtained from ultrasound images. The texture is an important property of the internal organs tissue, able to provide subtle information about the pathology. We previously defined the textural model of HCC, consisting in the exhaustive set of the relevant textural features, appropriate for HCC characterization and in the specific values of these features. In this work, we analyze the role that the superior order Grey Level Cooccurrence Matrices (GLCM) and the associated parameters have in the improvement of HCC characterization and automatic diagnosis. We also determine the best spatial relations between the pixels that lead to the highest performances, for the third, fifth and seventh order GLCM. The following classes will be considered: HCC, cirrhotic liver parenchyma on which it evolves and benign liver tumors

Improvements on coronal hole detection in SDO/AIA images using supervised classification

We demonstrate the use of machine learning algorithms in combination with segmentation techniques in order to distinguish coronal holes and filaments in SDO/AIA EUV images of the Sun. Based on two coronal hole detection techniques (intensity-based thresholding, SPoCA), we prepared data sets of manually labeled coronal hole and filament channel regions present on the Sun during the time range 2011 - 2013. By mapping the extracted regions from EUV observations onto HMI line-of-sight magnetograms we also include their magnetic characteristics. We computed shape measures from the segmented binary maps as well as first order and second order texture statistics from the segmented regions in the EUV images and magnetograms. These attributes were used for data mining investigations to identify the most performant rule to differentiate between coronal holes and filament channels. We applied several classifiers, namely Support Vector Machine, Linear Support Vector Machine, Decision Tree, and Random Forest and found that all classification rules achieve good results in general, with linear SVM providing the best performances (with a true skill statistic of ~0.90). Additional information from magnetic field data systematically improves the performance across all four classifiers for the SPoCA detection. Since the calculation is inexpensive in computing time, this approach is well suited for applications on real-time data. This study demonstrates how a machine learning approach may help improve upon an unsupervised feature extraction method.Comment: in press for SWS

On Importance of Acoustic Backscatter Corrections for Texture-based Seafloor Characterization

Seafloor segmentation and characterization based on local textural properties of acoustic backscatter has been a subject of research since 1980s due to the highly textured appearance of sonar images. The approach consists of subdivision of sonar image in a set of patches of certain size and calculation of a vector of features reflecting the patch texture. Advance of multibeam echosounders (MBES) allowed application of texture-based techniques to real geographical space, and predicted boundaries between acoustic facies became experimentally verifiable. However, acoustic return from uncalibrated MBES produces artifacts in backscatter mosaics, which in turn affects accuracy of delineation. Development of Geocoder allowed creation of more visually consistent images, and reduced the number of factors influencing mosaic creation. It is intuitively clear that more accurate backscatter mosaics lead to more reliable classification results. However, this statement has never been thoroughly verified. It has not been investigated which corrections are important for texture-based characterization and which are not essential. In this paper the authors are investigating the Stanton Banks common dataset. Raw data files from the dataset have been processed by the Geocoder at different levels of corrections. Each processing resulted in a backscatter mosaic demonstrating artifacts of different levels of severity. Mosaics then underwent textural analysis and unsupervised classification using Matlab package SonarClass. Results of seafloor characterization corresponding to varying levels of corrections were finally compared to the one generated by the best possible mosaic (the one embodying all the available corrections), providing an indicator of classification accuracy and giving guidance about which mosaic corrections are crucial for acoustic classification and which could be safely ignored

Chemotherapy-Response Monitoring of Breast Cancer Patients Using Quantitative Ultrasound-Based Intra-Tumour Heterogeneities

© 2017 The Author(s). Anti-cancer therapies including chemotherapy aim to induce tumour cell death. Cell death introduces alterations in cell morphology and tissue micro-structures that cause measurable changes in tissue echogenicity. This study investigated the effectiveness of quantitative ultrasound (QUS) parametric imaging to characterize intra-tumour heterogeneity and monitor the pathological response of breast cancer to chemotherapy in a large cohort of patients (n = 100). Results demonstrated that QUS imaging can non-invasively monitor pathological response and outcome of breast cancer patients to chemotherapy early following treatment initiation. Specifically, QUS biomarkers quantifying spatial heterogeneities in size, concentration and spacing of acoustic scatterers could predict treatment responses of patients with cross-validated accuracies of 82 ± 0.7%, 86 ± 0.7% and 85 ± 0.9% and areas under the receiver operating characteristic (ROC) curve of 0.75 ± 0.1, 0.80 ± 0.1 and 0.89 ± 0.1 at 1, 4 and 8 weeks after the start of treatment, respectively. The patients classified as responders and non-responders using QUS biomarkers demonstrated significantly different survivals, in good agreement with clinical and pathological endpoints. The results form a basis for using early predictive information on survival-linked patient response to facilitate adapting standard anti-cancer treatments on an individual patient basis

Universal in vivo Textural Model for Human Skin based on Optical Coherence Tomograms

Currently, diagnosis of skin diseases is based primarily on visual pattern recognition skills and expertise of the physician observing the lesion. Even though dermatologists are trained to recognize patterns of morphology, it is still a subjective visual assessment. Tools for automated pattern recognition can provide objective information to support clinical decision-making. Noninvasive skin imaging techniques provide complementary information to the clinician. In recent years, optical coherence tomography has become a powerful skin imaging technique. According to specific functional needs, skin architecture varies across different parts of the body, as do the textural characteristics in OCT images. There is, therefore, a critical need to systematically analyze OCT images from different body sites, to identify their significant qualitative and quantitative differences. Sixty-three optical and textural features extracted from OCT images of healthy and diseased skin are analyzed and in conjunction with decision-theoretic approaches used to create computational models of the diseases. We demonstrate that these models provide objective information to the clinician to assist in the diagnosis of abnormalities of cutaneous microstructure, and hence, aid in the determination of treatment. Specifically, we demonstrate the performance of this methodology on differentiating basal cell carcinoma (BCC) and squamous cell carcinoma (SCC) from healthy tissue

PERSIANN-MSA: A precipitation estimation method from satellite-based multispectral analysis

Visible and infrared data obtained from instruments onboard geostationary satellites have been extensively used for monitoring clouds and their evolution. The Advanced Baseline Imager (ABI) that will be launched onboard the Geostationary Operational Environmental Satellite-R (GOES-R) series in the near future will offer a larger range of spectral bands; hence, it will provide observations of cloud and rain systems at even finer spatial, temporal, and spectral resolutions than are possible with the current GOES. In this paper, a new method called Precipitation Estimation from Remotely Sensed information using Artificial Neural Networks-Multispectral Analysis (PERSIANN-MSA) is proposed to evaluate the effect of using multispectral imagery on precipitation estimation. The proposed approach uses a self-organizing feature map (SOFM) to classify multidimensional input information, extracted from each grid box and corresponding textural features of multispectral bands. In addition, principal component analysis (PCA) is used to reduce the dimensionality to a few independent input features while preserving most of the variations of all input information. The above method is applied to estimate rainfall using multiple channels of the Spinning Enhanced Visible and Infrared Imager (SEVIRI) onboard the Meteosat Second Generation (MSG) satellite. In comparison to the use of a single thermal infrared channel, the analysis shows that using multispectral data has the potential to improve rain detection and estimation skills with an average of more than 50% gain in equitable threat score for rain/no-rain detection, and more than 20% gain in correlation coefficient associated with rain-rate estimation. © 2009 American Meteorological Society

A robust adaptive wavelet-based method for classification of meningioma histology images

Intra-class variability in the texture of samples is an important problem in the domain of histological image classification. This issue is inherent to the field due to the high complexity of histology image data. A technique that provides good results in one trial may fail in another when the test and training data are changed and therefore, the technique needs to be adapted for intra-class texture variation. In this paper, we present a novel wavelet based multiresolution analysis approach to meningioma subtype classification in response to the challenge of data variation.We analyze the stability of Adaptive Discriminant Wavelet Packet Transform (ADWPT) and present a solution to the issue of variation in the ADWPT decomposition when texture in data changes. A feature selection approach is proposed that provides high classification accuracy

The design and investigation of nanocomposites containing dimeric nematogens and liquid crystal gold nanoparticles with plasmonic properties showing a nematic-nematic phase transition (Nᵤ-Nₓ/Ntb)

The construction of liquid crystal compositions consisting of the dimeric liquid crystal, CB_C9_CB (cyanobiphenyl dimer = 1",9"-bis(4-cyanobiphenyl-4'-yl)nonane), and the range of nematic systems is explored. The materials include a laterally functionalized monomer, which was used to construct a phase diagram with CB_C9_CB, as well as one laterally linked dimer liquid crystal material and two liquid crystal gold nanoparticle (LC-Au-NPs) systems. For the Au-NP-LCs, the NP diameters were varied between ~3.3 nm and 10 nm. Stable mixtures that exhibit a nematic-nematic phase transition are reported and were investigated by POM (polarizing optical microscopy), DSC (differential scanning calorimetry) and X-ray diffraction studies