Aspects of algorithms and dynamics of cellular paradigms

Els paradigmes cel·lulars, com les xarxes neuronals cel·lulars (CNN, en anglès) i els autòmats cel·lulars (CA, en anglès), són una eina excel·lent de càlcul, al ser equivalents a una màquina universal de Turing. La introducció de la màquina universal CNN (CNN-UM, en anglès) ha permès desenvolupar hardware, el nucli computacional del qual funciona segons la filosofia cel·lular; aquest hardware ha trobat aplicació en diversos camps al llarg de la darrera dècada. Malgrat això, encara hi ha moltes preguntes a obertes sobre com definir els algoritmes d'una CNN-UM i com estudiar la dinàmica dels autòmats cel·lulars. En aquesta tesis es tracten els dos problemes: primer, es demostra que es possible acotar l'espai dels algoritmes per a la CNN-UM i explorar-lo gràcies a les tècniques genètiques; i segon, s'expliquen els fonaments de l'estudi dels CA per mitjà de la dinàmica no lineal (segons la definició de Chua) i s'il·lustra com aquesta tècnica ha permès trobar resultats innovadors.Los paradigmas celulares, como las redes neuronales celulares (CNN, eninglés) y los autómatas celulares (CA, en inglés), son una excelenteherramienta de cálculo, al ser equivalentes a una maquina universal deTuring. La introducción de la maquina universal CNN (CNN-UM, eninglés) ha permitido desarrollar hardware cuyo núcleo computacionalfunciona según la filosofía celular; dicho hardware ha encontradoaplicación en varios campos a lo largo de la ultima década. Sinembargo, hay aun muchas preguntas abiertas sobre como definir losalgoritmos de una CNN-UM y como estudiar la dinámica de los autómatascelular. En esta tesis se tratan ambos problemas: primero se demuestraque es posible acotar el espacio de los algoritmos para la CNN-UM yexplorarlo gracias a técnicas genéticas; segundo, se explican losfundamentos del estudio de los CA por medio de la dinámica no lineal(según la definición de Chua) y se ilustra como esta técnica hapermitido encontrar resultados novedosos.Cellular paradigms, like Cellular Neural Networks (CNNs) and Cellular Automata (CA) are an excellent tool to perform computation, since they are equivalent to a Universal Turing machine. The introduction of the Cellular Neural Network - Universal Machine (CNN-UM) allowed us to develop hardware whose computational core works according to the principles of cellular paradigms; such a hardware has found application in a number of fields throughout the last decade. Nevertheless, there are still many open questions about how to define algorithms for a CNN-UM, and how to study the dynamics of Cellular Automata. In this dissertation both problems are tackled: first, we prove that it is possible to bound the space of all algorithms of CNN-UM and explore it through genetic techniques; second, we explain the fundamentals of the nonlinear perspective of CA (according to Chua's definition), and we illustrate how this technique has allowed us to find novel results

Neural network computation by in vitro transcriptional circuits

The structural similarity of neural networks and genetic regulatory networks to digital circuits, and hence to each other, was noted from the very beginning of their study [1, 2]. In this work, we propose a simple biochemical system whose architecture mimics that of genetic regulation and whose components allow for in vitro implementation of arbitrary circuits. We use only two enzymes in addition to DNA and RNA molecules: RNA polymerase (RNAP) and ribonuclease (RNase). We develop a rate equation for in vitro transcriptional networks, and derive a correspondence with general neural network rate equations [3]. As proof-of-principle demonstrations, an associative memory task and a feedforward network computation are shown by simulation. A difference between the neural network and biochemical models is also highlighted: global coupling of rate equations through enzyme saturation can lead to global feedback regulation, thus allowing a simple network without explicit mutual inhibition to perform the winner-take-all computation. Thus, the full complexity of the cell is not necessary for biochemical computation: a wide range of functional behaviors can be achieved with a small set of biochemical components

Evolutionary Robot Vision for People Tracking Based on Local Clustering

This paper discusses the role of evolutionary computation in visual perception for partner robots. The search of evolutionary computation has many analogies with human visual search. First of all, we discuss the analogies between the evolutionary search and human visual search. Next, we propose the concept of evolutionary robot vision, and a human tracking method based on the evolutionary robot vision. Finally, we show experimental results of the human tracking to discuss the effectiveness of our proposed method

Artificial life meets computational creativity?

I review the history of work in Artificial Life on the problem of the open-ended evolutionary growth of complexity in computational worlds. This is then put into the context of evolutionary epistemology and human creativity

An incremental approach to genetic algorithms based classification

Incremental learning has been widely addressed in the machine learning literature to cope with learning tasks where the learning environment is ever changing or training samples become available over time. However, most research work explores incremental learning with statistical algorithms or neural networks, rather than evolutionary algorithms. The work in this paper employs genetic algorithms (GAs) as basic learning algorithms for incremental learning within one or more classifier agents in a multi-agent environment. Four new approaches with different initialization schemes are proposed. They keep the old solutions and use an “integration” operation to integrate them with new elements to accommodate new attributes, while biased mutation and crossover operations are adopted to further evolve a reinforced solution. The simulation results on benchmark classification data sets show that the proposed approaches can deal with the arrival of new input attributes and integrate them with the original input space. It is also shown that the proposed approaches can be successfully used for incremental learning and improve classification rates as compared to the retraining GA. Possible applications for continuous incremental training and feature selection are also discussed

An Empirical Study of Graph Grammar Evolution

Vukovar, Croati

Incremental multiple objective genetic algorithms

This paper presents a new genetic algorithm approach to multi-objective optimization problemsIncremental Multiple Objective Genetic Algorithms (IMOGA). Different from conventional MOGA methods, it takes each objective into consideration incrementally. The whole evolution is divided into as many phases as the number of objectives, and one more objective is considered in each phase. Each phase is composed of two stages: first, an independent population is evolved to optimize one specific objective; second, the better-performing individuals from the evolved single-objective population and the multi-objective population evolved in the last phase are joined together by the operation of integration. The resulting population then becomes an initial multi-objective population, to which a multi-objective evolution based on the incremented objective set is applied. The experiment results show that, in most problems, the performance of IMOGA is better than that of three other MOGAs, NSGA-II, SPEA and PAES. IMOGA can find more solutions during the same time span, and the quality of solutions is better