CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications

This is the peer reviewed version of the following article: Rodríguez, G. , Martín, M. J., González, P. , Touriño, J. and Doallo, R. (2010), CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications. Concurrency Computat.: Pract. Exper., 22: 749-766. doi:10.1002/cpe.1541, which has been published in final form at https://doi.org/10.1002/cpe.1541. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions.[Abstract] With the evolution of high‐performance computing toward heterogeneous, massively parallel systems, parallel applications have developed new checkpoint and restart necessities. Whether due to a failure in the execution or to a migration of the application processes to different machines, checkpointing tools must be able to operate in heterogeneous environments. However, some of the data manipulated by a parallel application are not truly portable. Examples of these include opaque state (e.g. data structures for communications support) or diversity of interfaces for a single feature (e.g. communications, I/O). Directly manipulating the underlying ad hoc representations renders checkpointing tools unable to work on different environments. Portable checkpointers usually work around portability issues at the cost of transparency: the user must provide information such as what data need to be stored, where to store them, or where to checkpoint. CPPC (ComPiler for Portable Checkpointing) is a checkpointing tool designed to feature both portability and transparency. It is made up of a library and a compiler. The CPPC library contains routines for variable level checkpointing, using portable code and protocols. The CPPC compiler helps to achieve transparency by relieving the user from time‐consuming tasks, such as data flow and communications analyses and adding instrumentation code. This paper covers both the operation of the CPPC library and its compiler support. Experimental results using benchmarks and large‐scale real applications are included, demonstrating usability, efficiency, and portability.Miniesterio de Educación y Ciencia; TIN2007‐67537‐C03Xunta de Galicia; 2006/

CHECKPOINTING AND RECOVERY IN DISTRIBUTED AND DATABASE SYSTEMS

A transaction-consistent global checkpoint of a database records a state of the database which reflects the effect of only completed transactions and not the re- sults of any partially executed transactions. This thesis establishes the necessary and sufficient conditions for a checkpoint of a data item (or the checkpoints of a set of data items) to be part of a transaction-consistent global checkpoint of the database. This result would be useful for constructing transaction-consistent global checkpoints incrementally from the checkpoints of each individual data item of a database. By applying this condition, we can start from any useful checkpoint of any data item and then incrementally add checkpoints of other data items until we get a transaction- consistent global checkpoint of the database. This result can also help in designing non-intrusive checkpointing protocols for database systems. Based on the intuition gained from the development of the necessary and sufficient conditions, we also de- veloped a non-intrusive low-overhead checkpointing protocol for distributed database systems. Checkpointing and rollback recovery are also established techniques for achiev- ing fault-tolerance in distributed systems. Communication-induced checkpointing algorithms allow processes involved in a distributed computation take checkpoints independently while at the same time force processes to take additional checkpoints to make each checkpoint to be part of a consistent global checkpoint. This thesis develops a low-overhead communication-induced checkpointing protocol and presents a performance evaluation of the protocol

Mitigation of failures in high performance computing via runtime techniques

As machines increase in scale, it is predicted that failure rates of supercomputers will correspondingly increase. Even though the mean time to failure (MTTF) of individual component is high, the large number of components significantly decreases the system MTTF. Meanwhile, the decreasing size of transistors has been critical to the increase in capacity of supercomputers. The smaller the transistors are, silent data corruptions (SDC) are likely to occur more frequently. SDCs do not inhibit execution, but may silently lead to incorrect results. In this thesis, we leverage runtime system and compiler techniques to mitigate a significant fraction of failures automatically with low overhead. The main goals of various system-level fault tolerance strategies designed in this thesis are: reducing the extra cost added to application execution while improving system reliability; automatically adjusting fault tolerance decisions without user intervention based on environmental changes; protecting applications not only from fail-stop failures but also from silent data corruptions. The main contributions of this thesis are development of a semi-blocking checkpoint protocol that overlaps application execution with fault tolerance operation to reduce the overhead of checkpointing, a runtime system technique for automatic checkpoint and restart without user intervention, a holistic framework (ACR) for automatically detecting and recovering from silent data corruptions and a framework called FlipBack that provides targeted protection against silent data corruption with low cost

Locality-driven checkpoint and recovery

Checkpoint and recovery are important fault-tolerance techniques for distributed systems. The two categories of existing strategies incur unacceptable performance cost either at run time or upon failure recovery, when applied to large-scale distributed systems. In particular, the large number of messages and processes in these systems causes either considerable checkpoint as well as logging overhead, or catastrophic global-wise recovery effect. This thesis proposes a locality-driven strategy for efficiently checkpointing and recovering such systems with both affordable runtime cost and controllable failure recoverability. Messages establish dependencies between distributed processes, which can be either preserved by coordinated checkpoints or removed via logging. Existing strategies enforce a uniform handling policy for all message dependencies, and hence gains advantage at one end but bears disadvantage at the other. In this thesis, a generic theory of Quasi-Atomic Recovery has been formulated to accommodate message handling requirements of both kinds, and to allow using different message handling methods together. Quasi-atomicity of recovery blocks implies proper confinement of recoveries, and thus enables localization of checkpointing and recovery around such a block and consequently a hybrid strategy with combined advantages from both ends. A strategy of group checkpointing with selective logging has been proposed, based on the observation of message localization around 'locality regions' in distributed systems. In essence, a group-wise coordinated checkpoint is created around such a region and only the few inter-region messages are logged subsequently. Runtime overhead is optimized due to largely reduced logging efforts, and recovery spread is as localized as region-wise. Various protocols have been developed to provide trade-offs between flexibility and performance. Also proposed is the idea of process clone that can be used to effectively remove program-order recovery dependencies among successive group checkpoints and thus to stop inter-group recovery spread. Distributed executions exhibit locality of message interactions. Such locality originates from resolving distributed dependency localization via message passing, and appears as a hierarchical 'region-transition' pattern. A bottom-up approach has been proposed to identify those regions, by detecting popular recurrence patterns from individual processes as 'locality intervals', and then composing them into 'locality regions' based on their tight message coupling relations between each other. Experiments conducted on real-life applications have shown the existence of hierarchical locality regions and have justified the feasibility of this approach. Performance optimization of group checkpoint strategies has to do with their uses of locality. An abstract performance measure has been-proposed to properly integrate both runtime overhead and failure recoverability in a region-wise marner. Taking this measure as the optimization objective, a greedy heuristic has been introduced to decompose a given distributed execution into optimized regions. Analysis implies that an execution pattern with good locality leads to good optimized performance, and the locality pattern itself can serve as a good candidate for the optimal decomposition. Consequently, checkpoint protocols have been developed to efficiently identify optimized regions in such an execution, with assistance of either design-time or runtime knowledge

Efficient Passive Clustering and Gateways selection MANETs

Passive clustering does not employ control packets to collect topological information in ad hoc networks. In our proposal, we avoid making frequent changes in cluster architecture due to repeated election and re-election of cluster heads and gateways. Our primary objective has been to make Passive Clustering more practical by employing optimal number of gateways and reduce the number of rebroadcast packets

Staggered Consistent Checkpointing

A consistent checkpointing algorithm saves a consistent view of a distributed application's state on stable storage. The traditional consistent checkpointing algorithms require different processes to save their state at about the same time. This causes contention for the stable storage, potentially resulting in large overheads. Staggering the checkpoints taken by various processes can reduce checkpoint overhead [13]. This paper presents a simple approach to arbitrarily stagger the checkpoints. Our approach requires that the processes take consistent logical checkpoints, as compared to consistent physical checkpoints enforced by existing algorithms. Experimental results on nCube-2 are presented. Key words: Staggered checkpoints, consistent recovery line, rollback recovery, stable storage contention, fault tolerance. This research is supported in part by National Science Foundation grant MIP-9502563 and Texas Advanced Technology Program grant 009741-052-C. y To be presented in part ..