A cross-center smoothness prior for variational Bayesian brain tissue segmentation

Suppose one is faced with the challenge of tissue segmentation in MR images, without annotators at their center to provide labeled training data. One option is to go to another medical center for a trained classifier. Sadly, tissue classifiers do not generalize well across centers due to voxel intensity shifts caused by center-specific acquisition protocols. However, certain aspects of segmentations, such as spatial smoothness, remain relatively consistent and can be learned separately. Here we present a smoothness prior that is fit to segmentations produced at another medical center. This informative prior is presented to an unsupervised Bayesian model. The model clusters the voxel intensities, such that it produces segmentations that are similarly smooth to those of the other medical center. In addition, the unsupervised Bayesian model is extended to a semi-supervised variant, which needs no visual interpretation of clusters into tissues.Comment: 12 pages, 2 figures, 1 table. Accepted to the International Conference on Information Processing in Medical Imaging (2019

Hyper-Spectral Image Analysis with Partially-Latent Regression and Spatial Markov Dependencies

Hyper-spectral data can be analyzed to recover physical properties at large planetary scales. This involves resolving inverse problems which can be addressed within machine learning, with the advantage that, once a relationship between physical parameters and spectra has been established in a data-driven fashion, the learned relationship can be used to estimate physical parameters for new hyper-spectral observations. Within this framework, we propose a spatially-constrained and partially-latent regression method which maps high-dimensional inputs (hyper-spectral images) onto low-dimensional responses (physical parameters such as the local chemical composition of the soil). The proposed regression model comprises two key features. Firstly, it combines a Gaussian mixture of locally-linear mappings (GLLiM) with a partially-latent response model. While the former makes high-dimensional regression tractable, the latter enables to deal with physical parameters that cannot be observed or, more generally, with data contaminated by experimental artifacts that cannot be explained with noise models. Secondly, spatial constraints are introduced in the model through a Markov random field (MRF) prior which provides a spatial structure to the Gaussian-mixture hidden variables. Experiments conducted on a database composed of remotely sensed observations collected from the Mars planet by the Mars Express orbiter demonstrate the effectiveness of the proposed model.Comment: 12 pages, 4 figures, 3 table

Background Subtraction via Generalized Fused Lasso Foreground Modeling

Background Subtraction (BS) is one of the key steps in video analysis. Many background models have been proposed and achieved promising performance on public data sets. However, due to challenges such as illumination change, dynamic background etc. the resulted foreground segmentation often consists of holes as well as background noise. In this regard, we consider generalized fused lasso regularization to quest for intact structured foregrounds. Together with certain assumptions about the background, such as the low-rank assumption or the sparse-composition assumption (depending on whether pure background frames are provided), we formulate BS as a matrix decomposition problem using regularization terms for both the foreground and background matrices. Moreover, under the proposed formulation, the two generally distinctive background assumptions can be solved in a unified manner. The optimization was carried out via applying the augmented Lagrange multiplier (ALM) method in such a way that a fast parametric-flow algorithm is used for updating the foreground matrix. Experimental results on several popular BS data sets demonstrate the advantage of the proposed model compared to state-of-the-arts

Motion Segmentation from Clustering of Sparse Point Features Using Spatially Constrained Mixture Models

Motion is one of the strongest cues available for segmentation. While motion segmentation finds wide ranging applications in object detection, tracking, surveillance, robotics, image and video compression, scene reconstruction, video editing, and so on, it faces various challenges such as accurate motion recovery from noisy data, varying complexity of the models required to describe the computed image motion, the dynamic nature of the scene that may include a large number of independently moving objects undergoing occlusions, and the need to make high-level decisions while dealing with long image sequences. Keeping the sparse point features as the pivotal point, this thesis presents three distinct approaches that address some of the above mentioned motion segmentation challenges. The first part deals with the detection and tracking of sparse point features in image sequences. A framework is proposed where point features can be tracked jointly. Traditionally, sparse features have been tracked independently of one another. Combining the ideas from Lucas-Kanade and Horn-Schunck, this thesis presents a technique in which the estimated motion of a feature is influenced by the motion of the neighboring features. The joint feature tracking algorithm leads to an improved tracking performance over the standard Lucas-Kanade based tracking approach, especially while tracking features in untextured regions. The second part is related to motion segmentation using sparse point feature trajectories. The approach utilizes a spatially constrained mixture model framework and a greedy EM algorithm to group point features. In contrast to previous work, the algorithm is incremental in nature and allows for an arbitrary number of objects traveling at different relative speeds to be segmented, thus eliminating the need for an explicit initialization of the number of groups. The primary parameter used by the algorithm is the amount of evidence that must be accumulated before the features are grouped. A statistical goodness-of-fit test monitors the change in the motion parameters of a group over time in order to automatically update the reference frame. The approach works in real time and is able to segment various challenging sequences captured from still and moving cameras that contain multiple independently moving objects and motion blur. The third part of this thesis deals with the use of specialized models for motion segmentation. The articulated human motion is chosen as a representative example that requires a complex model to be accurately described. A motion-based approach for segmentation, tracking, and pose estimation of articulated bodies is presented. The human body is represented using the trajectories of a number of sparse points. A novel motion descriptor encodes the spatial relationships of the motion vectors representing various parts of the person and can discriminate between articulated and non-articulated motions, as well as between various pose and view angles. Furthermore, a nearest neighbor search for the closest motion descriptor from the labeled training data consisting of the human gait cycle in multiple views is performed, and this distance is fed to a Hidden Markov Model defined over multiple poses and viewpoints to obtain temporally consistent pose estimates. Experimental results on various sequences of walking subjects with multiple viewpoints and scale demonstrate the effectiveness of the approach. In particular, the purely motion based approach is able to track people in night-time sequences, even when the appearance based cues are not available. Finally, an application of image segmentation is presented in the context of iris segmentation. Iris is a widely used biometric for recognition and is known to be highly accurate if the segmentation of the iris region is near perfect. Non-ideal situations arise when the iris undergoes occlusion by eyelashes or eyelids, or the overall quality of the segmented iris is affected by illumination changes, or due to out-of-plane rotation of the eye. The proposed iris segmentation approach combines the appearance and the geometry of the eye to segment iris regions from non-ideal images. The image is modeled as a Markov random field, and a graph cuts based energy minimization algorithm is applied to label the pixels either as eyelashes, pupil, iris, or background using texture and image intensity information. The iris shape is modeled as an ellipse and is used to refine the pixel based segmentation. The results indicate the effectiveness of the segmentation algorithm in handling non-ideal iris images

Automatic recognition of fingerspelled words in British Sign Language

We investigate the problem of recognizing words from video, fingerspelled using the British Sign Language (BSL) fingerspelling alphabet. This is a challenging task since the BSL alphabet involves both hands occluding each other, and contains signs which are ambiguous from the observer’s viewpoint. The main contributions of our work include: (i) recognition based on hand shape alone, not requiring motion cues; (ii) robust visual features for hand shape recognition; (iii) scalability to large lexicon recognition with no re-training. We report results on a dataset of 1,000 low quality webcam videos of 100 words. The proposed method achieves a word recognition accuracy of 98.9%