Cluster Computing in the Classroom: Topics, Guidelines, and Experiences

With the progress of research on cluster computing, more and more universities have begun to offer various courses covering cluster computing. A wide variety of content can be taught in these courses. Because of this, a difficulty that arises is the selection of appropriate course material. The selection is complicated by the fact that some content in cluster computing is also covered by other courses such as operating systems, networking, or computer architecture. In addition, the background of students enrolled in cluster computing courses varies. These aspects of cluster computing make the development of good course material difficult. Combining our experiences in teaching cluster computing in several universities in the USA and Australia and conducting tutorials at many international conferences all over the world, we present prospective topics in cluster computing along with a wide variety of information sources (books, software, and materials on the web) from which instructors can choose. The course material described includes system architecture, parallel programming, algorithms, and applications. Instructors are advised to choose selected units in each of the topical areas and develop their own syllabus to meet course objectives. For example, a full course can be taught on system architecture for core computer science students. Or, a course on parallel programming could contain a brief coverage of system architecture and then devote the majority of time to programming methods. Other combinations are also possible. We share our experiences in teaching cluster computing and the topics we have chosen depending on course objectives

Simulation of 1+1 dimensional surface growth and lattices gases using GPUs

Restricted solid on solid surface growth models can be mapped onto binary lattice gases. We show that efficient simulation algorithms can be realized on GPUs either by CUDA or by OpenCL programming. We consider a deposition/evaporation model following Kardar-Parisi-Zhang growth in 1+1 dimensions related to the Asymmetric Simple Exclusion Process and show that for sizes, that fit into the shared memory of GPUs one can achieve the maximum parallelization speedup ~ x100 for a Quadro FX 5800 graphics card with respect to a single CPU of 2.67 GHz). This permits us to study the effect of quenched columnar disorder, requiring extremely long simulation times. We compare the CUDA realization with an OpenCL implementation designed for processor clusters via MPI. A two-lane traffic model with randomized turning points is also realized and the dynamical behavior has been investigated.Comment: 20 pages 12 figures, 1 table, to appear in Comp. Phys. Com

Castell: a heterogeneous cmp architecture scalable to hundreds of processors

Technology improvements and power constrains have taken multicore architectures to dominate microprocessor designs over uniprocessors. At the same time, accelerator based architectures have shown that heterogeneous multicores are very efficient and can provide high throughput for parallel applications, but with a high-programming effort. We propose Castell a scalable chip multiprocessor architecture that can be programmed as uniprocessors, and provides the high throughput of accelerator-based architectures. Castell relies on task-based programming models that simplify software development. These models use a runtime system that dynamically finds, schedules, and adds hardware-specific features to parallel tasks. One of these features is DMA transfers to overlap computation and data movement, which is known as double buffering. This feature allows applications on Castell to tolerate large memory latencies and lets us design the memory system focusing on memory bandwidth. In addition to provide programmability and the design of the memory system, we have used a hierarchical NoC and added a synchronization module. The NoC design distributes memory traffic efficiently to allow the architecture to scale. The synchronization module is a consequence of the large performance degradation of application for large synchronization latencies. Castell is mainly an architecture framework that enables the definition of domain-specific implementations, fine-tuned to a particular problem or application. So far, Castell has been successfully used to propose heterogeneous multicore architectures for scientific kernels, video decoding (using H.264), and protein sequence alignment (using Smith-Waterman and clustalW). It has also been used to explore a number of architecture optimizations such as enhanced DMA controllers, and architecture support for task-based programming models. ii

Design and resource management of reconfigurable multiprocessors for data-parallel applications

FPGA (Field-Programmable Gate Array)-based custom reconfigurable computing machines have established themselves as low-cost and low-risk alternatives to ASIC (Application-Specific Integrated Circuit) implementations and general-purpose microprocessors in accelerating a wide range of computation-intensive applications. Most often they are Application Specific Programmable Circuiits (ASPCs), which are developer programmable instead of user programmable. The major disadvantages of ASPCs are minimal programmability, and significant time and energy overheads caused by required hardware reconfiguration when the problem size outnumbers the available reconfigurable resources; these problems are expected to become more serious with increases in the FPGA chip size. On the other hand, dominant high-performance computing systems, such as PC clusters and SMPs (Symmetric Multiprocessors), suffer from high communication latencies and/or scalability problems. This research introduces low-cost, user-programmable and reconfigurable MultiProcessor-on-a-Programmable-Chip (MPoPC) systems for high-performance, low-cost computing. It also proposes a relevant resource management framework that deals with performance, power consumption and energy issues. These semi-customized systems reduce significantly runtime device reconfiguration by employing userprogrammable processing elements that are reusable for different tasks in large, complex applications. For the sake of illustration, two different types of MPoPCs with hardware FPUs (floating-point units) are designed and implemented for credible performance evaluation and modeling: the coarse-grain MIMD (Multiple-Instruction, Multiple-Data) CG-MPoPC machine based on a processor IP (Intellectual Property) core and the mixed-mode (MIMD, SIMD or M-SIMD) variant-grain HERA (HEterogeneous Reconfigurable Architecture) machine. In addition to alleviating the above difficulties, MPoPCs can offer several performance and energy advantages to our data-parallel applications when compared to ASPCs; they are simpler and more scalable, and have less verification time and cost. Various common computation-intensive benchmark algorithms, such as matrix-matrix multiplication (MMM) and LU factorization, are studied and their parallel solutions are shown for the two MPoPCs. The performance is evaluated with large sparse real-world matrices primarily from power engineering. We expect even further performance gains on MPoPCs in the near future by employing ever improving FPGAs. The innovative nature of this work has the potential to guide research in this arising field of high-performance, low-cost reconfigurable computing. The largest advantage of reconfigurable logic lies in its large degree of hardware customization and reconfiguration which allows reusing the resources to match the computation and communication needs of applications. Therefore, a major effort in the presented design methodology for mixed-mode MPoPCs, like HERA, is devoted to effective resource management. A two-phase approach is applied. A mixed-mode weighted Task Flow Graph (w-TFG) is first constructed for any given application, where tasks are classified according to their most appropriate computing mode (e.g., SIMD or MIMD). At compile time, an architecture is customized and synthesized for the TFG using an Integer Linear Programming (ILP) formulation and a parameterized hardware component library. Various run-time scheduling schemes with different performanceenergy objectives are proposed. A system-level energy model for HERA, which is based on low-level implementation data and run-time statistics, is proposed to guide performance-energy trade-off decisions. A parallel power flow analysis technique based on Newton\u27s method is proposed and employed to verify the methodology

Towards Ad-Hoc GPU Acceleration Of Parallel Eigensystem Computations

This paper explores the early implementation of high- performance routines for the solution of multiple large Hermitian eigenvector and eigenvalue systems on a Graphics Processing Unit (GPU). We report a perfor- mance increase of up to two orders of magnitude over the original EISPACK routines with a NVIDIA Tesla C2050 GPU, potentially allowing an order of magnitude in- crease in the complexity or resolution of a neutron scat- tering modeling application

Performance measurement and analysis of PC based cluster server using SET of Architecture and modeling a scalable High performance cluster

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Performance and power optimizations in chip multiprocessors for throughput-aware computation

The so-called "power (or power density) wall" has caused core frequency (and single-thread performance) to slow down, giving rise to the era of multi-core/multi-thread processors. For example, the IBM POWER4 processor, released in 2001, incorporated two single-thread cores into the same chip. In 2010, IBM released the POWER7 processor with eight 4-thread cores in the same chip, for a total capacity of 32 execution contexts. The ever increasing number of cores and threads gives rise to new opportunities and challenges for software and hardware architects. At software level, applications can benefit from the abundant number of execution contexts to boost throughput. But this challenges programmers to create highly-parallel applications and operating systems capable of scheduling them correctly. At hardware level, the increasing core and thread count puts pressure on the memory interface, because memory bandwidth grows at a slower pace ---phenomenon known as the "bandwidth (or memory) wall". In addition to memory bandwidth issues, chip power consumption rises due to manufacturers' difficulty to lower operating voltages sufficiently every processor generation. This thesis presents innovations to improve bandwidth and power consumption in chip multiprocessors (CMPs) for throughput-aware computation: a bandwidth-optimized last-level cache (LLC), a bandwidth-optimized vector register file, and a power/performance-aware thread placement heuristic. In contrast to state-of-the-art LLC designs, our organization avoids data replication and, hence, does not require keeping data coherent. Instead, the address space is statically distributed all over the LLC (in a fine-grained interleaving fashion). The absence of data replication increases the cache effective capacity, which results in better hit rates and higher bandwidth compared to a coherent LLC. We use double buffering to hide the extra access latency due to the lack of data replication. The proposed vector register file is composed of thousands of registers and organized as an aggregation of banks. We leverage such organization to attach small special-function "local computation elements" (LCEs) to each bank. This approach ---referred to as the "processor-in-regfile" (PIR) strategy--- overcomes the limited number of register file ports. Because each LCE is a SIMD computation element and all of them can proceed concurrently, the PIR strategy constitutes a highly-parallel super-wide-SIMD device (ideal for throughput-aware computation). Finally, we present a heuristic to reduce chip power consumption by dynamically placing software (application) threads across hardware (physical) threads. The heuristic gathers chip-level power and performance information at runtime to infer characteristics of the applications being executed. For example, if an application's threads share data, the heuristic may decide to place them in fewer cores to favor inter-thread data sharing and communication. In such case, the number of active cores decreases, which is a good opportunity to switch off the unused cores to save power. It is increasingly harder to find bulletproof (micro-)architectural solutions for the bandwidth and power scalability limitations in CMPs. Consequently, we think that architects should attack those problems from different flanks simultaneously, with complementary innovations. This thesis contributes with a battery of solutions to alleviate those problems in the context of throughput-aware computation: 1) proposing a bandwidth-optimized LLC; 2) proposing a bandwidth-optimized register file organization; and 3) proposing a simple technique to improve power-performance efficiency.El excesivo consumo de potencia de los procesadores actuales ha desacelerado el incremento en la frecuencia operativa de los mismos para dar lugar a la era de los procesadores con múltiples núcleos y múltiples hilos de ejecución. Por ejemplo, el procesador POWER7 de IBM, lanzado al mercado en 2010, incorpora ocho núcleos en el mismo chip, con cuatro hilos de ejecución por núcleo. Esto da lugar a nuevas oportunidades y desafíos para los arquitectos de software y hardware. A nivel de software, las aplicaciones pueden beneficiarse del abundante número de núcleos e hilos de ejecución para aumentar el rendimiento. Pero esto obliga a los programadores a crear aplicaciones altamente paralelas y sistemas operativos capaces de planificar correctamente la ejecución de las mismas. A nivel de hardware, el creciente número de núcleos e hilos de ejecución ejerce presión sobre la interfaz de memoria, ya que el ancho de banda de memoria crece a un ritmo más lento. Además de los problemas de ancho de banda de memoria, el consumo de energía del chip se eleva debido a la dificultad de los fabricantes para reducir suficientemente los voltajes de operación entre generaciones de procesadores. Esta tesis presenta innovaciones para mejorar el ancho de banda y consumo de energía en procesadores multinúcleo en el ámbito de la computación orientada a rendimiento ("throughput-aware computation"): una memoria caché de último nivel ("last-level cache" o LLC) optimizada para ancho de banda, un banco de registros vectorial optimizado para ancho de banda, y una heurística para planificar la ejecución de aplicaciones paralelas orientada a mejorar la eficiencia del consumo de potencia y desempeño. En contraste con los diseños de LLC de última generación, nuestra organización evita la duplicación de datos y, por tanto, no requiere de técnicas de coherencia. El espacio de direcciones de memoria se distribuye estáticamente en la LLC con un entrelazado de grano fino. La ausencia de replicación de datos aumenta la capacidad efectiva de la memoria caché, lo que se traduce en mejores tasas de acierto y mayor ancho de banda en comparación con una LLC coherente. Utilizamos la técnica de "doble buffering" para ocultar la latencia adicional necesaria para acceder a datos remotos. El banco de registros vectorial propuesto se compone de miles de registros y se organiza como una agregación de bancos. Incorporamos a cada banco una pequeña unidad de cómputo de propósito especial ("local computation element" o LCE). Este enfoque ---que llamamos "computación en banco de registros"--- permite superar el número limitado de puertos en el banco de registros. Debido a que cada LCE es una unidad de cómputo con soporte SIMD ("single instruction, multiple data") y todas ellas pueden proceder de forma concurrente, la estrategia de "computación en banco de registros" constituye un dispositivo SIMD altamente paralelo. Por último, presentamos una heurística para planificar la ejecución de aplicaciones paralelas orientada a reducir el consumo de energía del chip, colocando dinámicamente los hilos de ejecución a nivel de software entre los hilos de ejecución a nivel de hardware. La heurística obtiene, en tiempo de ejecución, información de consumo de potencia y desempeño del chip para inferir las características de las aplicaciones. Por ejemplo, si los hilos de ejecución a nivel de software comparten datos significativamente, la heurística puede decidir colocarlos en un menor número de núcleos para favorecer el intercambio de datos entre ellos. En tal caso, los núcleos no utilizados se pueden apagar para ahorrar energía. Cada vez es más difícil encontrar soluciones de arquitectura "a prueba de balas" para resolver las limitaciones de escalabilidad de los procesadores actuales. En consecuencia, creemos que los arquitectos deben atacar dichos problemas desde diferentes flancos simultáneamente, con innovaciones complementarias