Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

Multilevel Weighted Support Vector Machine for Classification on Healthcare Data with Missing Values

This work is motivated by the needs of predictive analytics on healthcare data as represented by Electronic Medical Records. Such data is invariably problematic: noisy, with missing entries, with imbalance in classes of interests, leading to serious bias in predictive modeling. Since standard data mining methods often produce poor performance measures, we argue for development of specialized techniques of data-preprocessing and classification. In this paper, we propose a new method to simultaneously classify large datasets and reduce the effects of missing values. It is based on a multilevel framework of the cost-sensitive SVM and the expected maximization imputation method for missing values, which relies on iterated regression analyses. We compare classification results of multilevel SVM-based algorithms on public benchmark datasets with imbalanced classes and missing values as well as real data in health applications, and show that our multilevel SVM-based method produces fast, and more accurate and robust classification results.Comment: arXiv admin note: substantial text overlap with arXiv:1503.0625

Pedestrian Attribute Recognition: A Survey

Recognizing pedestrian attributes is an important task in computer vision community due to it plays an important role in video surveillance. Many algorithms has been proposed to handle this task. The goal of this paper is to review existing works using traditional methods or based on deep learning networks. Firstly, we introduce the background of pedestrian attributes recognition (PAR, for short), including the fundamental concepts of pedestrian attributes and corresponding challenges. Secondly, we introduce existing benchmarks, including popular datasets and evaluation criterion. Thirdly, we analyse the concept of multi-task learning and multi-label learning, and also explain the relations between these two learning algorithms and pedestrian attribute recognition. We also review some popular network architectures which have widely applied in the deep learning community. Fourthly, we analyse popular solutions for this task, such as attributes group, part-based, \emph{etc}. Fifthly, we shown some applications which takes pedestrian attributes into consideration and achieve better performance. Finally, we summarized this paper and give several possible research directions for pedestrian attributes recognition. The project page of this paper can be found from the following website: \url{https://sites.google.com/view/ahu-pedestrianattributes/}.Comment: Check our project page for High Resolution version of this survey: https://sites.google.com/view/ahu-pedestrianattributes

Data mining for detecting Bitcoin Ponzi schemes

Soon after its introduction in 2009, Bitcoin has been adopted by cyber-criminals, which rely on its pseudonymity to implement virtually untraceable scams. One of the typical scams that operate on Bitcoin are the so-called Ponzi schemes. These are fraudulent investments which repay users with the funds invested by new users that join the scheme, and implode when it is no longer possible to find new investments. Despite being illegal in many countries, Ponzi schemes are now proliferating on Bitcoin, and they keep alluring new victims, who are plundered of millions of dollars. We apply data mining techniques to detect Bitcoin addresses related to Ponzi schemes. Our starting point is a dataset of features of real-world Ponzi schemes, that we construct by analysing, on the Bitcoin blockchain, the transactions used to perform the scams. We use this dataset to experiment with various machine learning algorithms, and we assess their effectiveness through standard validation protocols and performance metrics. The best of the classifiers we have experimented can identify most of the Ponzi schemes in the dataset, with a low number of false positives

A Novel Approach For Identifying Cloud Clusters Developing Into Tropical Cyclones

Providing advance notice of rare events, such as a cloud cluster (CC) developing into a tropical cyclone (TC), is of great importance. Having advance warning of such rare events possibly can help avoid or reduce the risk of damages and allow emergency responders and the affected community enough time to respond appropriately. Considering this, forecasters need better data mining and data driven techniques to identify developing CCs. Prior studies have attempted to predict the formation of TCs using numerical weather prediction models as well as satellite and radar data. However, refined observational data and forecasting techniques are not always available or accurate in areas such as the North Atlantic Ocean where data are sparse. Consequently, this research provides the predictive features that contribute to a CC developing into a TC using only global gridded satellite data that are readily available. This was accomplished by identifying and tracking CCs objectively where no expert knowledge is required to investigate the predictive features of developing CCs. We have applied the proposed oversampling technique named the Selective Clustering based Oversampling Technique (SCOT) to reduce the bias of the non-developing CCs when using standard classifiers. Our approach identifies twelve predictive features for developing CCs and demonstrates predictive skill for 0 - 48 hours prior to development. The results confirm that the proposed technique can satisfactorily identify developing CCs for each of the nine forecasts using standard classifiers such as Classification and Regression Trees (CART), neural networks, and support vector machines (SVM) and ten-fold cross validation. These results are based on the geometric mean values and are further verified using seven case studies such as Hurricane Katrina (2005). These results demonstrate that our proposed approach could potentially improve weather prediction and provide advance notice of a developing CC by using solely gridded satellite data

A Few-Shot Learning-Based Siamese Capsule Network for Intrusion Detection with Imbalanced Training Data

Network intrusion detection remains one of the major challenges in cybersecurity. In recent years, many machine-learning-based methods have been designed to capture the dynamic and complex intrusion patterns to improve the performance of intrusion detection systems. However, two issues, including imbalanced training data and new unknown attacks, still hinder the development of a reliable network intrusion detection system. In this paper, we propose a novel few-shot learning-based Siamese capsule network to tackle the scarcity of abnormal network traffic training data and enhance the detection of unknown attacks. In specific, the well-designed deep learning network excels at capturing dynamic relationships across traffic features. In addition, an unsupervised subtype sampling scheme is seamlessly integrated with the Siamese network to improve the detection of network intrusion attacks under the circumstance of imbalanced training data. Experimental results have demonstrated that the metric learning framework is more suitable to extract subtle and distinctive features to identify both known and unknown attacks after the sampling scheme compared to other supervised learning methods. Compared to the state-of-the-art methods, our proposed method achieves superior performance to effectively detect both types of attacks