Noisy multi-label semi-supervised dimensionality reduction

Noisy labeled data represent a rich source of information that often are easily accessible and cheap to obtain, but label noise might also have many negative consequences if not accounted for. How to fully utilize noisy labels has been studied extensively within the framework of standard supervised machine learning over a period of several decades. However, very little research has been conducted on solving the challenge posed by noisy labels in non-standard settings. This includes situations where only a fraction of the samples are labeled (semi-supervised) and each high-dimensional sample is associated with multiple labels. In this work, we present a novel semi-supervised and multi-label dimensionality reduction method that effectively utilizes information from both noisy multi-labels and unlabeled data. With the proposed Noisy multi-label semi-supervised dimensionality reduction (NMLSDR) method, the noisy multi-labels are denoised and unlabeled data are labeled simultaneously via a specially designed label propagation algorithm. NMLSDR then learns a projection matrix for reducing the dimensionality by maximizing the dependence between the enlarged and denoised multi-label space and the features in the projected space. Extensive experiments on synthetic data, benchmark datasets, as well as a real-world case study, demonstrate the effectiveness of the proposed algorithm and show that it outperforms state-of-the-art multi-label feature extraction algorithms.Comment: 38 page

Advances in Hyperspectral Image Classification: Earth monitoring with statistical learning methods

Hyperspectral images show similar statistical properties to natural grayscale or color photographic images. However, the classification of hyperspectral images is more challenging because of the very high dimensionality of the pixels and the small number of labeled examples typically available for learning. These peculiarities lead to particular signal processing problems, mainly characterized by indetermination and complex manifolds. The framework of statistical learning has gained popularity in the last decade. New methods have been presented to account for the spatial homogeneity of images, to include user's interaction via active learning, to take advantage of the manifold structure with semisupervised learning, to extract and encode invariances, or to adapt classifiers and image representations to unseen yet similar scenes. This tutuorial reviews the main advances for hyperspectral remote sensing image classification through illustrative examples.Comment: IEEE Signal Processing Magazine, 201

Improved functional prediction of proteins by learning kernel combinations in multilabel settings

Background We develop a probabilistic model for combining kernel matrices to predict the function of proteins. It extends previous approaches in that it can handle multiple labels which naturally appear in the context of protein function. Results Explicit modeling of multilabels significantly improves the capability of learning protein function from multiple kernels. The performance and the interpretability of the inference model are further improved by simultaneously predicting the subcellular localization of proteins and by combining pairwise classifiers to consistent class membership estimates. Conclusion For the purpose of functional prediction of proteins, multilabels provide valuable information that should be included adequately in the training process of classifiers. Learning of functional categories gains from co-prediction of subcellular localization. Pairwise separation rules allow very detailed insights into the relevance of different measurements like sequence, structure, interaction data, or expression data. A preliminary version of the software can be downloaded from http://www.inf.ethz.ch/personal/vroth/KernelHMM/.ISSN:1471-210

Effective Discriminative Feature Selection with Non-trivial Solutions

Feature selection and feature transformation, the two main ways to reduce dimensionality, are often presented separately. In this paper, a feature selection method is proposed by combining the popular transformation based dimensionality reduction method Linear Discriminant Analysis (LDA) and sparsity regularization. We impose row sparsity on the transformation matrix of LDA through ${\ell}_{2,1}$-norm regularization to achieve feature selection, and the resultant formulation optimizes for selecting the most discriminative features and removing the redundant ones simultaneously. The formulation is extended to the ${\ell}_{2,p}$-norm regularized case: which is more likely to offer better sparsity when $0<p<1$. Thus the formulation is a better approximation to the feature selection problem. An efficient algorithm is developed to solve the ${\ell}_{2,p}$-norm based optimization problem and it is proved that the algorithm converges when $0<p\le 2$. Systematical experiments are conducted to understand the work of the proposed method. Promising experimental results on various types of real-world data sets demonstrate the effectiveness of our algorithm

Contribution to supervised representation learning: algorithms and applications.

278 p.In this thesis, we focus on supervised learning methods for pattern categorization. In this context, itremains a major challenge to establish efficient relationships between the discriminant properties of theextracted features and the inter-class sparsity structure.Our first attempt to address this problem was to develop a method called "Robust Discriminant Analysiswith Feature Selection and Inter-class Sparsity" (RDA_FSIS). This method performs feature selectionand extraction simultaneously. The targeted projection transformation focuses on the most discriminativeoriginal features while guaranteeing that the extracted (or transformed) features belonging to the sameclass share a common sparse structure, which contributes to small intra-class distances.In a further study on this approach, some improvements have been introduced in terms of theoptimization criterion and the applied optimization process. In fact, we proposed an improved version ofthe original RDA_FSIS called "Enhanced Discriminant Analysis with Class Sparsity using GradientMethod" (EDA_CS). The basic improvement is twofold: on the first hand, in the alternatingoptimization, we update the linear transformation and tune it with the gradient descent method, resultingin a more efficient and less complex solution than the closed form adopted in RDA_FSIS.On the other hand, the method could be used as a fine-tuning technique for many feature extractionmethods. The main feature of this approach lies in the fact that it is a gradient descent based refinementapplied to a closed form solution. This makes it suitable for combining several extraction methods andcan thus improve the performance of the classification process.In accordance with the above methods, we proposed a hybrid linear feature extraction scheme called"feature extraction using gradient descent with hybrid initialization" (FE_GD_HI). This method, basedon a unified criterion, was able to take advantage of several powerful linear discriminant methods. Thelinear transformation is computed using a descent gradient method. The strength of this approach is thatit is generic in the sense that it allows fine tuning of the hybrid solution provided by different methods.Finally, we proposed a new efficient ensemble learning approach that aims to estimate an improved datarepresentation. The proposed method is called "ICS Based Ensemble Learning for Image Classification"(EM_ICS). Instead of using multiple classifiers on the transformed features, we aim to estimate multipleextracted feature subsets. These were obtained by multiple learned linear embeddings. Multiple featuresubsets were used to estimate the transformations, which were ranked using multiple feature selectiontechniques. The derived extracted feature subsets were concatenated into a single data representationvector with strong discriminative properties.Experiments conducted on various benchmark datasets ranging from face images, handwritten digitimages, object images to text datasets showed promising results that outperformed the existing state-ofthe-art and competing methods

Inverse Projection Representation and Category Contribution Rate for Robust Tumor Recognition

Sparse representation based classification (SRC) methods have achieved remarkable results. SRC, however, still suffer from requiring enough training samples, insufficient use of test samples and instability of representation. In this paper, a stable inverse projection representation based classification (IPRC) is presented to tackle these problems by effectively using test samples. An IPR is firstly proposed and its feasibility and stability are analyzed. A classification criterion named category contribution rate is constructed to match the IPR and complete classification. Moreover, a statistical measure is introduced to quantify the stability of representation-based classification methods. Based on the IPRC technique, a robust tumor recognition framework is presented by interpreting microarray gene expression data, where a two-stage hybrid gene selection method is introduced to select informative genes. Finally, the functional analysis of candidate's pathogenicity-related genes is given. Extensive experiments on six public tumor microarray gene expression datasets demonstrate the proposed technique is competitive with state-of-the-art methods.Comment: 14 pages, 19 figures, 10 table