HEC: Collaborative Research: SAM^2 Toolkit: Scalable and Adaptive Metadata Management for High-End Computing

The increasing demand for Exa-byte-scale storage capacity by high end computing applications requires a higher level of scalability and dependability than that provided by current file and storage systems. The proposal deals with file systems research for metadata management of scalable cluster-based parallel and distributed file storage systems in the HEC environment. It aims to develop a scalable and adaptive metadata management (SAM2) toolkit to extend features of and fully leverage the peak performance promised by state-of-the-art cluster-based parallel and distributed file storage systems used by the high performance computing community. There is a large body of research on data movement and management scaling, however, the need to scale up the attributes of cluster-based file systems and I/O, that is, metadata, has been underestimated. An understanding of the characteristics of metadata traffic, and an application of proper load-balancing, caching, prefetching and grouping mechanisms to perform metadata management correspondingly, will lead to a high scalability. It is anticipated that by appropriately plugging the scalable and adaptive metadata management components into the state-of-the-art cluster-based parallel and distributed file storage systems one could potentially increase the performance of applications and file systems, and help translate the promise and potential of high peak performance of such systems to real application performance improvements. The project involves the following components: 1. Develop multi-variable forecasting models to analyze and predict file metadata access patterns. 2. Develop scalable and adaptive file name mapping schemes using the duplicative Bloom filter array technique to enforce load balance and increase scalability 3. Develop decentralized, locality-aware metadata grouping schemes to facilitate the bulk metadata operations such as prefetching. 4. Develop an adaptive cache coherence protocol using a distributed shared object model for client-side and server-side metadata caching. 5. Prototype the SAM2 components into the state-of-the-art parallel virtual file system PVFS2 and a distributed storage data caching system, set up an experimental framework for a DOE CMS Tier 2 site at University of Nebraska-Lincoln and conduct benchmark, evaluation and validation studies

Program Transformations for Asynchronous and Batched Query Submission

The performance of database/Web-service backed applications can be significantly improved by asynchronous submission of queries/requests well ahead of the point where the results are needed, so that results are likely to have been fetched already when they are actually needed. However, manually writing applications to exploit asynchronous query submission is tedious and error-prone. In this paper we address the issue of automatically transforming a program written assuming synchronous query submission, to one that exploits asynchronous query submission. Our program transformation method is based on data flow analysis and is framed as a set of transformation rules. Our rules can handle query executions within loops, unlike some of the earlier work in this area. We also present a novel approach that, at runtime, can combine multiple asynchronous requests into batches, thereby achieving the benefits of batching in addition to that of asynchronous submission. We have built a tool that implements our transformation techniques on Java programs that use JDBC calls; our tool can be extended to handle Web service calls. We have carried out a detailed experimental study on several real-life applications, which shows the effectiveness of the proposed rewrite techniques, both in terms of their applicability and the performance gains achieved.Comment: 14 page

Computer-language based data prefetching techniques

Data prefetching has long been used as a technique to improve access times to persistent data. It is based on retrieving data records from persistent storage to main memory before the records are needed. Data prefetching has been applied to a wide variety of persistent storage systems, from file systems to Relational Database Management Systems and NoSQL databases, with the aim of reducing access times to the data maintained by the system and thus improve the execution times of the applications using this data. However, most existing solutions to data prefetching have been based on information that can be retrieved from the storage system itself, whether in the form of heuristics based on the data schema or data access patterns detected by monitoring access to the system. There are multiple disadvantages of these approaches in terms of the rigidity of the heuristics they use, the accuracy of the predictions they make and / or the time they need to make these predictions, a process often performed while the applications are accessing the data and causing considerable overhead. In light of the above, this thesis proposes two novel approaches to data prefetching based on predictions made by analyzing the instructions and statements of the computer languages used to access persistent data. The proposed approaches take into consideration how the data is accessed by the higher-level applications, make accurate predictions and are performed without causing any additional overhead. The first of the proposed approaches aims at analyzing instructions of applications written in object-oriented languages in order to prefetch data from Persistent Object Stores. The approach is based on static code analysis that is done prior to the application execution and hence does not add any overhead. It also includes various strategies to deal with cases that require runtime information unavailable prior to the execution of the application. We integrate this analysis approach into an existing Persistent Object Store and run a series of extensive experiments to measure the improvement obtained by prefetching the objects predicted by the approach. The second approach analyzes statements and historic logs of the declarative query language SPARQL in order to prefetch data from RDF Triplestores. The approach measures two types of similarity between SPARQL queries in order to detect recurring query patterns in the historic logs. Afterwards, it uses the detected patterns to predict subsequent queries and launch them before they are requested to prefetch the data needed by them. Our evaluation of the proposed approach shows that it high-accuracy prediction and can achieve a high cache hit rate when caching the results of the predicted queries.Precargar datos ha sido una de las técnicas más comunes para mejorar los tiempos de acceso a datos persistentes. Esta técnica se basa en predecir los registros de datos que se van a acceder en el futuro y cargarlos del almacenimiento persistente a la memoria con antelación a su uso. Precargar datos ha sido aplicado en multitud de sistemas de almacenimiento persistente, desde sistemas de ficheros a bases de datos relacionales y NoSQL, con el objetivo de reducir los tiempos de acceso a los datos y por lo tanto mejorar los tiempos de ejecución de las aplicaciones que usan estos datos. Sin embargo, la mayoría de los enfoques existentes utilizan predicciones basadas en información que se encuentra dentro del mismo sistema de almacenimiento, ya sea en forma de heurísticas basadas en el esquema de los datos o patrones de acceso a los datos generados mediante la monitorización del acceso al sistema. Estos enfoques presentan varias desventajas en cuanto a la rigidez de las heurísticas usadas, la precisión de las predicciones generadas y el tiempo que necesitan para generar estas predicciones, un proceso que se realiza con frecuencia mientras las aplicaciones acceden a los datos y que puede tener efectos negativos en el tiempo de ejecución de estas aplicaciones. En vista de lo anterior, esta tesis presenta dos enfoques novedosos para precargar datos basados en predicciones generadas por el análisis de las instrucciones y sentencias del lenguaje informático usado para acceder a los datos persistentes. Los enfoques propuestos toman en consideración cómo las aplicaciones acceden a los datos, generan predicciones precisas y mejoran el rendimiento de las aplicaciones sin causar ningún efecto negativo. El primer enfoque analiza las instrucciones de applicaciones escritas en lenguajes de programación orientados a objetos con el fin de precargar datos de almacenes de objetos persistentes. El enfoque emplea análisis estático de código hecho antes de la ejecución de las aplicaciones, y por lo tanto no afecta negativamente el rendimiento de las mismas. El enfoque también incluye varias estrategias para tratar casos que requieren información de runtime no disponible antes de ejecutar las aplicaciones. Además, integramos este enfoque en un almacén de objetos persistentes y ejecutamos una serie extensa de experimentos para medir la mejora de rendimiento que se puede obtener utilizando el enfoque. Por otro lado, el segundo enfoque analiza las sentencias y logs del lenguaje declarativo de consultas SPARQL para precargar datos de triplestores de RDF. Este enfoque aplica dos medidas para calcular la similtud entre las consultas del lenguaje SPARQL con el objetivo de detectar patrones recurrentes en los logs históricos. Posteriormente, el enfoque utiliza los patrones detectados para predecir las consultas siguientes y precargar con antelación los datos que necesitan. Nuestra evaluación muestra que este enfoque produce predicciones de alta precisión y puede lograr un alto índice de aciertos cuando los resultados de las consultas predichas se guardan en el caché.Postprint (published version

State Management for Efficient Event Pattern Detection

Event Stream Processing (ESP) Systeme überwachen kontinuierliche Datenströme, um benutzerdefinierte Queries auszuwerten. Die Herausforderung besteht darin, dass die Queryverarbeitung zustandsbehaftet ist und die Anzahl von Teilübereinstimmungen mit der Größe der verarbeiteten Events exponentiell anwächst. Die Dynamik von Streams und die Notwendigkeit, entfernte Daten zu integrieren, erschweren die Zustandsverwaltung. Erstens liefern heterogene Eventquellen Streams mit unvorhersehbaren Eingaberaten und Queryselektivitäten. Während Spitzenzeiten ist eine erschöpfende Verarbeitung unmöglich, und die Systeme müssen auf eine Best-Effort-Verarbeitung zurückgreifen. Zweitens erfordern Queries möglicherweise externe Daten, um ein bestimmtes Event für eine Query auszuwählen. Solche Abhängigkeiten sind problematisch: Das Abrufen der Daten unterbricht die Stream-Verarbeitung. Ohne eine Eventauswahl auf Grundlage externer Daten wird das Wachstum von Teilübereinstimmungen verstärkt. In dieser Dissertation stelle ich Strategien für optimiertes Zustandsmanagement von ESP Systemen vor. Zuerst ermögliche ich eine Best-Effort-Verarbeitung mittels Load Shedding. Dabei werden sowohl Eingabeeevents als auch Teilübereinstimmungen systematisch verworfen, um eine Latenzschwelle mit minimalem Qualitätsverlust zu garantieren. Zweitens integriere ich externe Daten, indem ich das Abrufen dieser von der Verwendung in der Queryverarbeitung entkoppele. Mit einem effizienten Caching-Mechanismus vermeide ich Unterbrechungen durch Übertragungslatenzen. Dazu werden externe Daten basierend auf ihrer erwarteten Verwendung vorab abgerufen und mittels Lazy Evaluation bei der Eventauswahl berücksichtigt. Dabei wird ein Kostenmodell verwendet, um zu bestimmen, wann welche externen Daten abgerufen und wie lange sie im Cache aufbewahrt werden sollen. Ich habe die Effektivität und Effizienz der vorgeschlagenen Strategien anhand von synthetischen und realen Daten ausgewertet und unter Beweis gestellt.Event stream processing systems continuously evaluate queries over event streams to detect user-specified patterns with low latency. However, the challenge is that query processing is stateful and it maintains partial matches that grow exponentially in the size of processed events. State management is complicated by the dynamicity of streams and the need to integrate remote data. First, heterogeneous event sources yield dynamic streams with unpredictable input rates, data distributions, and query selectivities. During peak times, exhaustive processing is unreasonable, and systems shall resort to best-effort processing. Second, queries may require remote data to select a specific event for a pattern. Such dependencies are problematic: Fetching the remote data interrupts the stream processing. Yet, without event selection based on remote data, the growth of partial matches is amplified. In this dissertation, I present strategies for optimised state management in event pattern detection. First, I enable best-effort processing with load shedding that discards both input events and partial matches. I carefully select the shedding elements to satisfy a latency bound while striving for a minimal loss in result quality. Second, to efficiently integrate remote data, I decouple the fetching of remote data from its use in query evaluation by a caching mechanism. To this end, I hide the transmission latency by prefetching remote data based on anticipated use and by lazy evaluation that postpones the event selection based on remote data to avoid interruptions. A cost model is used to determine when to fetch which remote data items and how long to keep them in the cache. I evaluated the above techniques with queries over synthetic and real-world data. I show that the load shedding technique significantly improves the recall of pattern detection over baseline approaches, while the technique for remote data integration significantly reduces the pattern detection latency

Measuring Semantic Similarity among Text Snippets and Page Counts in Data Mining

Measuring the semantic similarity between words is an important component in various tasks on the web such as relation extraction, community mining, document clustering, and automatic metadata extraction. Despite the usefulness of semantic similarity measures in these applications, accurately measuring semantic similarity between two words (or entities) remains a challenging task. We propose an empirical method to estimate semantic similarity using page counts and text snippets retrieved from a web search engine for two words. Specifically, we define various word co-occurrence measures using page counts and integrate those with lexical patterns extracted from text snippets. To identify the numerous semantic relations that exist between two given words, we propose a novel pattern extraction algorithm and a pattern clustering algorithm. The optimal combination of page counts-based co-occurrence measures and lexical pattern clusters is learned using support vector machines. The proposed method outperforms various baselines and previously proposed web-based semantic similarity measures on three benchmark data sets showing a high correlation with human ratings. Moreover, the proposed method significantly improves the accuracy in a community mining task

Designing Efficient and Accurate Behavior-Aware Mobile Systems

The proliferation of sensors on smartphones, tablets and wearables has led to a plethora of behavior classification algorithms designed to sense various aspects of individual user\u27s behavior such as daily habits, activity, physiology, mobility, sleep, emotional and social contexts. This ability to sense and understand behaviors of mobile users will drive the next generation of mobile applications providing services based on the users\u27 behavioral patterns. In this thesis, we investigate ways in which we can enhance and utilize the understanding of user behaviors in such applications. In particular, we focus on identifying the key challenges in the following three aspects of behavior-aware applications: detection, understanding, and prediction of user behaviors; and present systems and techniques developed to address these challenges. In this thesis, we first demonstrate the utility of wristbands equipped with inertial sensors in real-time detection of health-related behaviors such as smoking and eating. Our approach detects these behaviors in a passive manner without any explicit user interaction and does not require use of any cumbersome device. Our results show that we can detect smoking with 95% accuracy, 91% precision and 81% recall in the natural environment. Second, we design a context-query engine for sensing multiple user contexts continuously, accurately and efficiently on mobile devices; the key necessity for understanding and analyzing behaviors. Our context-query engine performs information fusion of contexts for an individual user to enable optimizations like i) energy-efficient sensing, and ii) accurate context inference. Our results show that we can improve accuracy of a context classifier by up to 42% and reduce the number of classifiers required to observe the user state by 33%. Finally, we demonstrate the utility of predicting app usage behavior, in improving the freshness of mobile apps such as Facebook that present users with the latest content fetched from remote servers. We present an app prediction algorithm that utilizes user contexts to predict the app a user is likely to use and pre-fetches the data over the network for the predicted app. We show that our proposed algorithm delivers application content to the user that is on an average fresh within 3 minutes

Bridging the Gap between Application and Solid-State-Drives

Data storage is one of the important and often critical parts of the computing system in terms of performance, cost, reliability, and energy. Numerous new memory technologies, such as NAND flash, phase change memory (PCM), magnetic RAM (STT-RAM) and Memristor, have emerged recently. Many of them have already entered the production system. Traditional storage optimization and caching algorithms are far from optimal because storage I/Os do not show simple locality. To provide optimal storage we need accurate predictions of I/O behavior. However, the workloads are increasingly dynamic and diverse, making the long and short time I/O prediction challenge. Because of the evolution of the storage technologies and the increasing diversity of workloads, the storage software is becoming more and more complex. For example, Flash Translation Layer (FTL) is added for NAND-flash based Solid State Disks (NAND-SSDs). However, it introduces overhead such as address translation delay and garbage collection costs. There are many recent studies aim to address the overhead. Unfortunately, there is no one-size-fits-all solution due to the variety of workloads. Despite rapidly evolving in storage technologies, the increasing heterogeneity and diversity in machines and workloads coupled with the continued data explosion exacerbate the gap between computing and storage speeds. In this dissertation, we improve the data storage performance from both top-down and bottom-up approach. First, we will investigate exposing the storage level parallelism so that applications can avoid I/O contentions and workloads skew when scheduling the jobs. Second, we will study how architecture aware task scheduling can improve the performance of the application when PCM based NVRAM are equipped. Third, we will develop an I/O correlation aware flash translation layer for NAND-flash based Solid State Disks. Fourth, we will build a DRAM-based correlation aware FTL emulator and study the performance in various filesystems