6,053 research outputs found
Compressed Text Indexes:From Theory to Practice!
A compressed full-text self-index represents a text in a compressed form and
still answers queries efficiently. This technology represents a breakthrough
over the text indexing techniques of the previous decade, whose indexes
required several times the size of the text. Although it is relatively new,
this technology has matured up to a point where theoretical research is giving
way to practical developments. Nonetheless this requires significant
programming skills, a deep engineering effort, and a strong algorithmic
background to dig into the research results. To date only isolated
implementations and focused comparisons of compressed indexes have been
reported, and they missed a common API, which prevented their re-use or
deployment within other applications.
The goal of this paper is to fill this gap. First, we present the existing
implementations of compressed indexes from a practitioner's point of view.
Second, we introduce the Pizza&Chili site, which offers tuned implementations
and a standardized API for the most successful compressed full-text
self-indexes, together with effective testbeds and scripts for their automatic
validation and test. Third, we show the results of our extensive experiments on
these codes with the aim of demonstrating the practical relevance of this novel
and exciting technology
Compressed materialised views of semi-structured data
Query performance issues over semi-structured data have led to the emergence of materialised XML views as a means of restricting the data structure processed by a query. However preserving the conventional representation of such views remains a significant limiting factor especially in the context of mobile devices where processing power, memory usage and bandwidth are significant factors. To explore the concept of a compressed materialised view, we extend our earlier work on structural XML compression to produce a combination of structural summarisation and data compression techniques. These techniques provide a basis for efficiently dealing with both structural queries and valuebased predicates. We evaluate the effectiveness of such a scheme, presenting results and performance measures that show advantages of using such structures
Efficient XML Keyword Search based on DAG-Compression
In contrast to XML query languages as e.g. XPath which require knowledge on
the query language as well as on the document structure, keyword search is open
to anybody. As the size of XML sources grows rapidly, the need for efficient
search indices on XML data that support keyword search increases. In this
paper, we present an approach of XML keyword search which is based on the DAG
of the XML data, where repeated substructures are considered only once, and
therefore, have to be searched only once. As our performance evaluation shows,
this DAG-based extension of the set intersection search algorithm[1], [2], can
lead to search times that are on large documents more than twice as fast as the
search times of the XML-based approach. Additionally, we utilize a smaller
index, i.e., we consume less main memory to compute the results
Fast and Tiny Structural Self-Indexes for XML
XML document markup is highly repetitive and therefore well compressible
using dictionary-based methods such as DAGs or grammars. In the context of
selectivity estimation, grammar-compressed trees were used before as synopsis
for structural XPath queries. Here a fully-fledged index over such grammars is
presented. The index allows to execute arbitrary tree algorithms with a
slow-down that is comparable to the space improvement. More interestingly,
certain algorithms execute much faster over the index (because no decompression
occurs). E.g., for structural XPath count queries, evaluating over the index is
faster than previous XPath implementations, often by two orders of magnitude.
The index also allows to serialize XML results (including texts) faster than
previous systems, by a factor of ca. 2-3. This is due to efficient copy
handling of grammar repetitions, and because materialization is totally
avoided. In order to compare with twig join implementations, we implemented a
materializer which writes out pre-order numbers of result nodes, and show its
competitiveness.Comment: 13 page
bdbms -- A Database Management System for Biological Data
Biologists are increasingly using databases for storing and managing their
data. Biological databases typically consist of a mixture of raw data,
metadata, sequences, annotations, and related data obtained from various
sources. Current database technology lacks several functionalities that are
needed by biological databases. In this paper, we introduce bdbms, an
extensible prototype database management system for supporting biological data.
bdbms extends the functionalities of current DBMSs to include: (1) Annotation
and provenance management including storage, indexing, manipulation, and
querying of annotation and provenance as first class objects in bdbms, (2)
Local dependency tracking to track the dependencies and derivations among data
items, (3) Update authorization to support data curation via content-based
authorization, in contrast to identity-based authorization, and (4) New access
methods and their supporting operators that support pattern matching on various
types of compressed biological data types. This paper presents the design of
bdbms along with the techniques proposed to support these functionalities
including an extension to SQL. We also outline some open issues in building
bdbms.Comment: This article is published under a Creative Commons License Agreement
(http://creativecommons.org/licenses/by/2.5/.) You may copy, distribute,
display, and perform the work, make derivative works and make commercial use
of the work, but, you must attribute the work to the author and CIDR 2007.
3rd Biennial Conference on Innovative Data Systems Research (CIDR) January
710, 2007, Asilomar, California, US
An In-Memory XQuery/XPath Engine over a Compressed Structured Text Representation
We describe the architecture and main algorithmic design decisions for an XQuery/XPath processing engine over XML collections which will be represented using a self-indexing approach, that is, a compressed representation that will allow for basic searching and navigational operations in compressed form. The goal is a structure that occupies little space and thus permits manipulating large collections in main memory
Path Queries on Compressed XML
Central to any XML query language is a path language such as XPath which operates on the tree structure of the XML document. We demonstrate in this paper that the tree structure can be e#ectively compressed and manipulated using techniques derived from symbolic model checking . Specifically, we show first that succinct representations of document tree structures based on sharing subtrees are highly e#ective. Second, we show that compressed structures can be queried directly and e#ciently through a process of manipulating selections of nodes and partial decompression
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