Contributions in computational intelligence with results in functional neuroimaging

This thesis applies computational intelligence methodologies to study functional brain images. It is a state-of-the-art application relative to unsupervised learning domain to functional neuroimaging. There are also contributions related to computational intelligence on topics relative to clustering validation and spatio-temporal clustering analysis. Speci_cally, there are the presentation of a new separation measure based on fuzzy sets theory to establish the validity of the fuzzy clustering outcomes and the presentation of a framework to approach the parcellation of functional neuroimages taking in account both spatial and temporal patterns. These contributions have been applied to neuroimages obtained with functional Magnetic Resonance Imaging, using both active and passive paradigm and using both in-house data and fMRI repository. The results obtained shown, globally, an improvement on the quality of the neuroimaging analysis using the methodological contributions proposed

Data mining using intelligent systems : an optimized weighted fuzzy decision tree approach

Data mining can be said to have the aim to analyze the observational datasets to find relationships and to present the data in ways that are both understandable and useful. In this thesis, some existing intelligent systems techniques such as Self-Organizing Map, Fuzzy C-means and decision tree are used to analyze several datasets. The techniques are used to provide flexible information processing capability for handling real-life situations. This thesis is concerned with the design, implementation, testing and application of these techniques to those datasets. The thesis also introduces a hybrid intelligent systems technique: Optimized Weighted Fuzzy Decision Tree (OWFDT) with the aim of improving Fuzzy Decision Trees (FDT) and solving practical problems. This thesis first proposes an optimized weighted fuzzy decision tree, incorporating the introduction of Fuzzy C-Means to fuzzify the input instances but keeping the expected labels crisp. This leads to a different output layer activation function and weight connection in the neural network (NN) structure obtained by mapping the FDT to the NN. A momentum term was also introduced into the learning process to train the weight connections to avoid oscillation or divergence. A new reasoning mechanism has been also proposed to combine the constructed tree with those weights which had been optimized in the learning process. This thesis also makes a comparison between the OWFDT and two benchmark algorithms, Fuzzy ID3 and weighted FDT. SIx datasets ranging from material science to medical and civil engineering were introduced as case study applications. These datasets involve classification of composite material failure mechanism, classification of electrocorticography (ECoG)/Electroencephalogram (EEG) signals, eye bacteria prediction and wave overtopping prediction. Different intelligent systems techniques were used to cluster the patterns and predict the classes although OWFDT was used to design classifiers for all the datasets. In the material dataset, Self-Organizing Map and Fuzzy C-Means were used to cluster the acoustic event signals and classify those events to different failure mechanism, after the classification, OWFDT was introduced to design a classifier in an attempt to classify acoustic event signals. For the eye bacteria dataset, we use the bagging technique to improve the classification accuracy of Multilayer Perceptrons and Decision Trees. Bootstrap aggregating (bagging) to Decision Tree also helped to select those most important sensors (features) so that the dimension of the data could be reduced. Those features which were most important were used to grow the OWFDT and the curse of dimensionality problem could be solved using this approach. The last dataset, which is concerned with wave overtopping, was used to benchmark OWFDT with some other Intelligent Systems techniques, such as Adaptive Neuro-Fuzzy Inference System (ANFIS), Evolving Fuzzy Neural Network (EFuNN), Genetic Neural Mathematical Method (GNMM) and Fuzzy ARTMAP. Through analyzing these datasets using these Intelligent Systems Techniques, it has been shown that patterns and classes can be found or can be classified through combining those techniques together. OWFDT has also demonstrated its efficiency and effectiveness as compared with a conventional fuzzy Decision Tree and weighted fuzzy Decision Tree

Data mining using intelligent systems : an optimized weighted fuzzy decision tree approach

Data mining can be said to have the aim to analyze the observational datasets to find relationships and to present the data in ways that are both understandable and useful. In this thesis, some existing intelligent systems techniques such as Self-Organizing Map, Fuzzy C-means and decision tree are used to analyze several datasets. The techniques are used to provide flexible information processing capability for handling real-life situations. This thesis is concerned with the design, implementation, testing and application of these techniques to those datasets. The thesis also introduces a hybrid intelligent systems technique: Optimized Weighted Fuzzy Decision Tree (OWFDT) with the aim of improving Fuzzy Decision Trees (FDT) and solving practical problems. This thesis first proposes an optimized weighted fuzzy decision tree, incorporating the introduction of Fuzzy C-Means to fuzzify the input instances but keeping the expected labels crisp. This leads to a different output layer activation function and weight connection in the neural network (NN) structure obtained by mapping the FDT to the NN. A momentum term was also introduced into the learning process to train the weight connections to avoid oscillation or divergence. A new reasoning mechanism has been also proposed to combine the constructed tree with those weights which had been optimized in the learning process. This thesis also makes a comparison between the OWFDT and two benchmark algorithms, Fuzzy ID3 and weighted FDT. SIx datasets ranging from material science to medical and civil engineering were introduced as case study applications. These datasets involve classification of composite material failure mechanism, classification of electrocorticography (ECoG)/Electroencephalogram (EEG) signals, eye bacteria prediction and wave overtopping prediction. Different intelligent systems techniques were used to cluster the patterns and predict the classes although OWFDT was used to design classifiers for all the datasets. In the material dataset, Self-Organizing Map and Fuzzy C-Means were used to cluster the acoustic event signals and classify those events to different failure mechanism, after the classification, OWFDT was introduced to design a classifier in an attempt to classify acoustic event signals. For the eye bacteria dataset, we use the bagging technique to improve the classification accuracy of Multilayer Perceptrons and Decision Trees. Bootstrap aggregating (bagging) to Decision Tree also helped to select those most important sensors (features) so that the dimension of the data could be reduced. Those features which were most important were used to grow the OWFDT and the curse of dimensionality problem could be solved using this approach. The last dataset, which is concerned with wave overtopping, was used to benchmark OWFDT with some other Intelligent Systems techniques, such as Adaptive Neuro-Fuzzy Inference System (ANFIS), Evolving Fuzzy Neural Network (EFuNN), Genetic Neural Mathematical Method (GNMM) and Fuzzy ARTMAP. Through analyzing these datasets using these Intelligent Systems Techniques, it has been shown that patterns and classes can be found or can be classified through combining those techniques together. OWFDT has also demonstrated its efficiency and effectiveness as compared with a conventional fuzzy Decision Tree and weighted fuzzy Decision Tree.EThOS - Electronic Theses Online ServiceUniversity of WarwickOverseas Research Students Awards Scheme (ORSAS)GBUnited Kingdo

Context-dependent fusion with application to landmine detection.

Traditional machine learning and pattern recognition systems use a feature descriptor to describe the sensor data and a particular classifier (also called expert or learner ) to determine the true class of a given pattern. However, for complex detection and classification problems, involving data with large intra-class variations and noisy inputs, no single source of information can provide a satisfactory solution. As a result, combination of multiple classifiers is playing an increasing role in solving these complex pattern recognition problems, and has proven to be viable alternative to using a single classifier. In this thesis we introduce a new Context-Dependent Fusion (CDF) approach, We use this method to fuse multiple algorithms which use different types of features and different classification methods on multiple sensor data. The proposed approach is motivated by the observation that there is no single algorithm that can consistently outperform all other algorithms. In fact, the relative performance of different algorithms can vary significantly depending on several factions such as extracted features, and characteristics of the target class. The CDF method is a local approach that adapts the fusion method to different regions of the feature space. The goal is to take advantages of the strengths of few algorithms in different regions of the feature space without being affected by the weaknesses of the other algorithms and also avoiding the loss of potentially valuable information provided by few weak classifiers by considering their output as well. The proposed fusion has three main interacting components. The first component, called Context Extraction, partitions the composite feature space into groups of similar signatures, or contexts. Then, the second component assigns an aggregation weight to each detector\u27s decision in each context based on its relative performance within the context. The third component combines the multiple decisions, using the learned weights, to make a final decision. For Context Extraction component, a novel algorithm that performs clustering and feature discrimination is used to cluster the composite feature space and identify the relevant features for each cluster. For the fusion component, six different methods were proposed and investigated. The proposed approached were applied to the problem of landmine detection. Detection and removal of landmines is a serious problem affecting civilians and soldiers worldwide. Several detection algorithms on landmine have been proposed. Extensive testing of these methods has shown that the relative performance of different detectors can vary significantly depending on the mine type, geographical site, soil and weather conditions, and burial depth, etc. Therefore, multi-algorithm, and multi-sensor fusion is a critical component in land mine detection. Results on large and diverse real data collections show that the proposed method can identify meaningful and coherent clusters and that different expert algorithms can be identified for the different contexts. Our experiments have also indicated that the context-dependent fusion outperforms all individual detectors and several global fusion methods

Analysis of FMRI Exams Through Unsupervised Learning and Evaluation Index

In the last few years, the clustering of time series has seen significant growth and has proven effective in providing useful information in various domains of use. This growing interest in time series clustering is the result of the effort made by the scientific community in the context of time data mining. For these reasons, the first phase of the thesis focused on the study of the data obtained from fMRI exams carried out in task-based and resting state mode, using and comparing different clustering algorithms: SelfOrganizing map (SOM), the Growing Neural Gas (GNG) and Neural Gas (NG) which are crisp-type algorithms, a fuzzy algorithm, the Fuzzy C algorithm, was also used (FCM). The evaluation of the results obtained by using clustering algorithms was carried out using the Davies Bouldin evaluation index (DBI or DB index). Clustering evaluation is the second topic of this thesis. To evaluate the validity of the clustering, there are specific techniques, but none of these is already consolidated for the study of fMRI exams. Furthermore, the evaluation of evaluation techniques is still an open research field. Eight clustering validation indexes (CVIs) applied to fMRI data clustering will be analysed. The validation indices that have been used are Pakhira Bandyopadhyay Maulik Index (crisp and fuzzy), Fukuyama Sugeno Index, Rezaee Lelieveldt Reider Index, Wang Sun Jiang Index, Xie Beni Index, Davies Bouldin Index, Soft Davies Bouldin Index. Furthermore, an evaluation of the evaluation indices will be carried out, which will take into account the sub-optimal performance obtained by the indices, through the introduction of new metrics. Finally, a new methodology for the evaluation of CVIs will be introduced, which will use an ANFIS model

Error management in ATLAS TDAQ : an intelligent systems approach

This thesis is concerned with the use of intelligent system techniques (IST) within a large distributed software system, specifically the ATLAS TDAQ system which has been developed and is currently in use at the European Laboratory for Particle Physics(CERN). The overall aim is to investigate and evaluate a range of ITS techniques in order to improve the error management system (EMS) currently used within the TDAQ system via error detection and classification. The thesis work will provide a reference for future research and development of such methods in the TDAQ system. The thesis begins by describing the TDAQ system and the existing EMS, with a focus on the underlying expert system approach, in order to identify areas where improvements can be made using IST techniques. It then discusses measures of evaluating error detection and classification techniques and the factors specific to the TDAQ system. Error conditions are then simulated in a controlled manner using an experimental setup and datasets were gathered from two different sources. Analysis and processing of the datasets using statistical and ITS techniques shows that clusters exists in the data corresponding to the different simulated errors. Different ITS techniques are applied to the gathered datasets in order to realise an error detection model. These techniques include Artificial Neural Networks (ANNs), Support Vector Machines (SVMs) and Cartesian Genetic Programming (CGP) and a comparison of the respective advantages and disadvantages is made. The principle conclusions from this work are that IST can be successfully used to detect errors in the ATLAS TDAQ system and thus can provide a tool to improve the overall error management system. It is of particular importance that the IST can be used without having a detailed knowledge of the system, as the ATLAS TDAQ is too complex for a single person to have complete understanding of. The results of this research will benefit researchers developing and evaluating IST techniques in similar large scale distributed systems

An Information Theoretic Approach For Feature Selection And Segmentation In Posterior Fossa Tumors

Posterior Fossa (PF) is a type of brain tumor located in or near brain stem and cerebellum. About 55% - 70 % pediatric brain tumors arise in the posterior fossa, compared with only 15% - 20% of adult tumors. For segmenting PF tumors we should have features to study the characteristics of tumors. In literature, different types of texture features such as Fractal Dimension (FD) and Multifractional Brownian Motion (mBm) have been exploited for measuring randomness associated with brain and tumor tissues structures, and the varying appearance of tissues in magnetic resonance images (MRI). For selecting best features techniques such as neural network and boosting methods have been exploited. However, neural network cannot descirbe about the properties of texture features. We explore methods such as information theroetic methods which can perform feature selection based on properties of texture features. The primary contribution of this dissertation is investigating efficacy of different image features such as intensity, fractal texture, and level - set shape in segmentation of PF tumor for pediatric patients. We explore effectiveness of using four different feature selection and three different segmentation techniques respectively to discriminate tumor regions from normal tissue in multimodal brain MRI. Our research suggest that Kullback - Leibler Divergence (KLD) measure for feature ranking and selection and Expectation Maximization (EM) algorithm for feature fusion and tumor segmentation offer the best performance for the patient data in this study. To improve segmentation accuracy, we need to consider abnormalities such as cyst, edema and necrosis which surround tumors. In this work, we exploit features which describe properties of cyst and technique which can be used to segment it. To achieve this goal, we extend the two class KLD techniques to multiclass feature selection techniques, so that we can effectively select features for tumor, cyst and non tumor tissues. We compute segemntation accuracy by computing number of pixels segemented to total number of pixels for the best features. For automated process we integrate the inhomoheneity correction, feature selection using KLD and segmentation in an integrated EM framework. To validate results we have used similarity coefficients for computing the robustness of segmented tumor and cyst

Two and three dimensional segmentation of multimodal imagery

The role of segmentation in the realms of image understanding/analysis, computer vision, pattern recognition, remote sensing and medical imaging in recent years has been significantly augmented due to accelerated scientific advances made in the acquisition of image data. This low-level analysis protocol is critical to numerous applications, with the primary goal of expediting and improving the effectiveness of subsequent high-level operations by providing a condensed and pertinent representation of image information. In this research, we propose a novel unsupervised segmentation framework for facilitating meaningful segregation of 2-D/3-D image data across multiple modalities (color, remote-sensing and biomedical imaging) into non-overlapping partitions using several spatial-spectral attributes. Initially, our framework exploits the information obtained from detecting edges inherent in the data. To this effect, by using a vector gradient detection technique, pixels without edges are grouped and individually labeled to partition some initial portion of the input image content. Pixels that contain higher gradient densities are included by the dynamic generation of segments as the algorithm progresses to generate an initial region map. Subsequently, texture modeling is performed and the obtained gradient, texture and intensity information along with the aforementioned initial partition map are used to perform a multivariate refinement procedure, to fuse groups with similar characteristics yielding the final output segmentation. Experimental results obtained in comparison to published/state-of the-art segmentation techniques for color as well as multi/hyperspectral imagery, demonstrate the advantages of the proposed method. Furthermore, for the purpose of achieving improved computational efficiency we propose an extension of the aforestated methodology in a multi-resolution framework, demonstrated on color images. Finally, this research also encompasses a 3-D extension of the aforementioned algorithm demonstrated on medical (Magnetic Resonance Imaging / Computed Tomography) volumes