Roles of binding elements, FOXL2 domains, and interactions with cJUN and SMADs in regulation of FSHβ.

We previously identified FOXL2 as a critical component in FSHβ gene transcription. Here, we show that mice deficient in FOXL2 have lower levels of gonadotropin gene expression and fewer LH- and FSH-containing cells, but the same level of other pituitary hormones compared to wild-type littermates, highlighting a role of FOXL2 in the pituitary gonadotrope. Further, we investigate the function of FOXL2 in the gonadotrope cell and determine which domains of the FOXL2 protein are necessary for induction of FSHβ transcription. There is a stronger induction of FSHβ reporter transcription by truncated FOXL2 proteins, but no induction with the mutant lacking the forkhead domain. Specifically, FOXL2 plays a role in activin induction of FSHβ, functioning in concert with activin-induced SMAD proteins. Activin acts through multiple promoter elements to induce FSHβ expression, some of which bind FOXL2. Each of these FOXL2-binding sites is either juxtaposed or overlapping with a SMAD-binding element. We determined that FOXL2 and SMAD4 proteins form a higher order complex on the most proximal FOXL2 site. Surprisingly, two other sites important for activin induction bind neither SMADs nor FOXL2, suggesting additional factors at work. Furthermore, we show that FOXL2 plays a role in synergistic induction of FSHβ by GnRH and activin through interactions with the cJUN component of the AP1 complex that is necessary for GnRH responsiveness. Collectively, our results demonstrate the necessity of FOXL2 for proper FSH production in mice and implicate FOXL2 in integration of transcription factors at the level of the FSHβ promoter

Enhancing Clinical Decision Support Systems with Public Knowledge Bases

With vast amount of biomedical literature available online, doctors have the benefits of consulting the literature before making clinical decisions, but they are facing the daunting task of finding needles in haystacks. In this situation, it would help doctors if an effective clinical decision support system could generate accurate queries and return a manageable size of highly useful articles. Existing studies showed the useful-ness of patients’ diagnosis information in such scenario, but diagnosis is often missing in most cases. Furthermore, existing diagnosis prediction systems mainly focus on predicting a small range of diseases with well-formatted features, and it is still a great challenge to perform large-scale automatic diagnosis predictions based on noisy pa-tient medical records. In this paper, we propose automatic diagnosis prediction meth-ods for enhancing the retrieval in a clinical decision support system, where the predic-tion is based on evidences automatically collected from publicly accessible online knowledge bases such as Wikipedia and Semantic MEDLINE Database (SemMedDB). The assumption is that relevant diseases and their corresponding symptoms co-occur more frequently in these knowledge bases. Our methods perfor-mance was evaluated using test collections from the Clinical Decision Support (CDS) track in TREC 2014, 2015 and 2016. The results show that our best method can au-tomatically predict diagnosis with about 65.56% usefulness, and such predictions can significantly improve the biomedical literatures retrieval. Our methods can generate comparable retrieval results to the state-of-art methods, which utilize much more complicated methods and some manually crafted medical knowledge. One possible future work is to apply these methods in collaboration with real doctors

Event Driven Messaging with Role-Based Subscriptions

Event Driven Messaging with Role-Based Subscriptions (EDM-RBS) is a framework integrated into the Service Management Database (SMDB) to allow for role-based and subscription-based delivery of synchronous and asynchronous messages over JMS (Java Messaging Service), SMTP (Simple Mail Transfer Protocol), or SMS (Short Messaging Service). This allows for 24/7 operation with users in all parts of the world. The software classifies messages by triggering data type, application source, owner of data triggering event (mission), classification, sub-classification and various other secondary classifying tags. Messages are routed to applications or users based on subscription rules using a combination of the above message attributes. This program provides a framework for identifying connected users and their applications for targeted delivery of messages over JMS to the client applications the user is logged into. EDMRBS provides the ability to send notifications over e-mail or pager rather than having to rely on a live human to do it. It is implemented as an Oracle application that uses Oracle relational database management system intrinsic functions. It is configurable to use Oracle AQ JMS API or an external JMS provider for messaging. It fully integrates into the event-logging framework of SMDB (Subnet Management Database)

NASA Tech Briefs, June 2009

Topics covered include: Device for Measuring Low Flow Speed in a Duct, Measuring Thermal Conductivity of a Small Insulation Sample, Alignment Jig for the Precise Measurement of THz Radiation, Autoignition Chamber for Remote Testing of Pyrotechnic Devices, Microwave Power Combiners for Signals of Arbitrary Amplitude, Synthetic Foveal Imaging Technology, Airborne Antenna System for Minimum-Cycle-Slip GPS Reception, Improved Starting Materials for Back-Illuminated Imagers, Multi-Modulator for Bandwidth-Efficient Communication, Some Improvements in Utilization of Flash Memory Devices, GPS/MEMS IMU/Microprocessor Board for Navigation, T/R Multi-Chip MMIC Modules for 150 GHz, Pneumatic Haptic Interfaces, Device Acquires and Retains Rock or Ice Samples, Cryogenic Feedthrough Test Rig, Improved Assembly for Gas Shielding During Welding or Brazing, Two-Step Plasma Process for Cleaning Indium Bonding Bumps, Tool for Crimping Flexible Circuit Leads, Yb14MnSb11 as a High-Efficiency Thermoelectric Material, Polyimide-Foam/Aerogel Composites for Thermal Insulation, Converting CSV Files to RKSML Files, Service Management Database for DSN Equipment, Chemochromic Hydrogen Leak Detectors, Compatibility of Segments of Thermoelectric Generators, Complementary Barrier Infrared Detector, JPL Greenland Moulin Exploration Probe, Ultra-Lightweight Self-Deployable Nanocomposite Structure for Habitat Applications, and Room-Temperature Ionic Liquids for Electrochemical Capacitors

Maneuver Automation Software

The Maneuver Automation Software (MAS) automates the process of generating commands for maneuvers to keep the spacecraft of the Cassini-Huygens mission on a predetermined prime mission trajectory. Before MAS became available, a team of approximately 10 members had to work about two weeks to design, test, and implement each maneuver in a process that involved running many maneuver-related application programs and then serially handing off data products to other parts of the team. MAS enables a three-member team to design, test, and implement a maneuver in about one-half hour after Navigation has process-tracking data. MAS accepts more than 60 parameters and 22 files as input directly from users. MAS consists of Practical Extraction and Reporting Language (PERL) scripts that link, sequence, and execute the maneuver- related application programs: "Pushing a single button" on a graphical user interface causes MAS to run navigation programs that design a maneuver; programs that create sequences of commands to execute the maneuver on the spacecraft; and a program that generates predictions about maneuver performance and generates reports and other files that enable users to quickly review and verify the maneuver design. MAS can also generate presentation materials, initiate electronic command request forms, and archive all data products for future reference

Estimating Relative Positions of Outer-Space Structures

A computer program estimates the relative position and orientation of two structures from measurements, made by use of electronic cameras and laser range finders on one structure, of distances and angular positions of fiducial objects on the other structure. The program was written specifically for use in determining errors in the alignment of large structures deployed in outer space from a space shuttle. The program is based partly on equations for transformations among the various coordinate systems involved in the measurements and on equations that account for errors in the transformation operators. It computes a least-squares estimate of the relative position and orientation. Sequential least-squares estimates, acquired at a measurement rate of 4 Hz, are averaged by passing them through a fourth-order Butterworth filter. The program is executed in a computer aboard the space shuttle, and its position and orientation estimates are displayed to astronauts on a graphical user interface

Multi-Mission Automated Task Invocation Subsystem

Multi-Mission Automated Task Invocation Subsystem (MATIS) is software that establishes a distributed data-processing framework for automated generation of instrument data products from a spacecraft mission. Each mission may set up a set of MATIS servers for processing its data products. MATIS embodies lessons learned in experience with prior instrument- data-product-generation software. MATIS is an event-driven workflow manager that interprets project-specific, user-defined rules for managing processes. It executes programs in response to specific events under specific conditions according to the rules. Because requirements of different missions are too diverse to be satisfied by one program, MATIS accommodates plug-in programs. MATIS is flexible in that users can control such processing parameters as how many pipelines to run and on which computing machines to run them. MATIS has a fail-safe capability. At each step, MATIS captures and retains pertinent information needed to complete the step and start the next step. In the event of a restart, this information is retrieved so that processing can be resumed appropriately. At this writing, it is planned to develop a graphical user interface (GUI) for monitoring and controlling a product generation engine in MATIS. The GUI would enable users to schedule multiple processes and manage the data products produced in the processes. Although MATIS was initially designed for instrument data product generation

Pilot in loop assessment of fault tolerant flight control schemes in a motion flight simulator

This research presents the pilot in the loop tests carried out in a Six-Degree of Freedom (6-DOF) motion flight simulator to evaluate failure detection, isolation and identification (FDII) schemes for an advanced F-15 aircraft. The objective behind this study is to leverage the capability of the flight simulator at West Virginia University (WVU) to carry out a performance assessment of neurally augmented control algorithms developed on a Matlab/Simulink RTM platform. The experimental setup features an interface setup of Gen-2 SimulinkRTM schemes with MOTUS Flight Simulator (MFS). The set up is a close substitute to a real flight and thus is helpful in evaluation of the schemes in a realistic manner. The graphics in X-plane is used to obtain visual cues and the motion platform is used to obtain motion cues in the simulator cockpit. The whole set-up enables the pilot to respond with a joystick in the advent of a failure as he would otherwise in a real flight. The pilot response in maintaining the mission profile is different for different neural network augmentations and thus an indication of performance comparison of these schemes. Secondly, FDII schemes are developed for a sensor and actuator failure using an adaptive threshold for cross-correlation coefficients of the angular rates of the aircraft. Failure detection, isolation and identification logic is formulated based on monitoring the cross-correlation parameters with their Floating Limiter (FL) bounds. The FDII scheme developed shows a good performance with desktop simulation because of no pilot activity but with a pilot in the loop significant cross-correlation of the rates occur and hence the scheme become more susceptible to wrongs FDII. In addition, the pilot might induce some coupling of the cross-correlation parameters between detection and identification time which may trigger false detections and may configure the controller differently based on incorrect detection. Thus it is necessary that FDII scheme accommodate real flight conditions. The performance of the FDII schemes is improved with a pilot in the loop by monitoring the cross-correlation parameters and fine tuning FDII algorithms for real situations. This study has set up an excellent example to effectively utilize the aural, visual and motion cues to create a higher level of simulation complexity in designing control algorithms