Spatial variability mapping of crop residue using hyperion (EO-1) hyperspectral data

Sherpa Romeo green journal; open accessSoil management practices that maintain crop residue cover and reduce tillage improve soil structure, increase organic matter content in the soil, positively influence water infiltration, evaporation and soil temperature, and play an important role in fixing CO2 in the soil. Consequently, good residue management practices on agricultural land have many positive impacts on soil quality, crop production quality and decrease the rate of soil erosion. Several studies have been undertaken to develop and test methods to derive information on crop residue cover and soil tillage using empirical and semi-empirical methods in combination with remote sensing data. However, these methods are generally not sufficiently rigorous and accurate for characterizing the spatial variability of crop residue cover in agricultural fields. The goal of this research is to investigate the potential of hyperspectral Hyperion (Earth Observing-1, EO-1) data and constrained linear spectral mixture analysis (CLSMA) for percent crop residue cover estimation and mapping. Hyperion data were acquired together with ground-reference measurements for validation purposes at the beginning of the agricultural season (prior to spring crop planting) in Saskatchewan (Canada). At this time, only bare soil and crop residue were present with no crop cover development. In order to extract the crop residue fraction, the images were preprocessed, and then unmixed considering the entire spectral range (427 nm–2355 nm) and the pure spectra (endmember). The results showed that the correlation between ground-reference measurements and extracted fractions from the Hyperion data using CLMSA showed that the model was overall a very good predictor for crop residue percent cover (index of agreement (D) of 0.94, coefficient of determination (R2) of 0.73 and root mean square error (RMSE) of 8.7%) and soil percent cover (D of 0.91, R2 of 0.68 and RMSE of 10.3%). This performance of Hyperion is mainly due to the spectral band characteristics, especially the availability of contiguous narrow bands in the short-wave infrared (SWIR) region, which is sensitive to the residue (lignin and cellulose absorption features).Ye

Manifold learning based spectral unmixing of hyperspectral remote sensing data

Nonlinear mixing effects inherent in hyperspectral data are not properly represented in linear spectral unmixing models. Although direct nonlinear unmixing models provide capability to capture nonlinear phenomena, they are difficult to formulate and the results are not always generalizable. Manifold learning based spectral unmixing accommodates nonlinearity in the data in the feature extraction stage followed by linear mixing, thereby incorporating some characteristics of nonlinearity while retaining advantages of linear unmixing approaches. Since endmember selection is critical to successful spectral unmixing, it is important to select proper endmembers from the manifold space. However, excessive computational burden hinders development of manifolds for large-scale remote sensing datasets. This dissertation addresses issues related to high computational overhead requirements of manifold learning for developing representative manifolds for the spectral unmixing task. Manifold approximations using landmarks are popular for mitigating the computational complexity of manifold learning. A new computationally effective landmark selection method that exploits spatial redundancy in the imagery is proposed. A robust, less costly landmark set with low spectral and spatial redundancy is successfully incorporated with a hybrid manifold which shares properties of both global and local manifolds. While landmark methods reduce computational demand, the resulting manifolds may not represent subtle features of the manifold adequately. Active learning heuristics are introduced to increase the number of landmarks, with the goal of developing more representative manifolds for spectral unmixing. By communicating between the landmark set and the query criteria relative to spectral unmixing, more representative and stable manifolds with less spectrally and spatially redundant landmarks are developed. A new ranking method based on the pixels with locally high spectral variability within image subsets and convex-geometry finds a solution more quickly and precisely. Experiments were conducted to evaluate the proposed methods using the AVIRIS Cuprite hyperspectral reference dataset. A case study of manifold learning based spectral unmixing in agricultural areas is included in the dissertation.Remotely sensed data collected by airborne or spaceborne sensors are utilized to quantify crop residue cover over an extensive area. Although remote sensing indices are popular for characterizing residue amounts, they are not effective with noisy Hyperion data because the effect of residual striping artifacts is amplified in ratios involving band differences. In this case study, spectral unmixing techniques are investigated for estimating crop residue as an alternative approach to empirical models developed using band based indices. The spectral unmixing techniques, and especially the manifold learning approaches, provide more robust, lower RMSE estimates for crop residue cover than the hyperspectral index based method for Hyperion data

Potential of Space-Borne Hyperspectral Data for Biomass Quantification in an Arid Environment : Advantages and Limitations

In spite of considerable efforts to monitor global vegetation, biomass quantification in drylands is still a major challenge due to low spectral resolution and considerable background effects. Hence, this study examines the potential of the space-borne hyperspectral Hyperion sensor compared to the multispectral Landsat OLI sensor in predicting dwarf shrub biomass in an arid region characterized by challenging conditions for satellite-based analysis: The Eastern Pamirs of Tajikistan. We calculated vegetation indices for all available wavelengths of both sensors, correlated these indices with field-mapped biomass while considering the multiple comparison problem, and assessed the predictive performance of single-variable linear models constructed with data from each of the sensors. Results showed an increased performance of the hyperspectral sensor and the particular suitability of indices capturing the short-wave infrared spectral region in dwarf shrub biomass prediction. Performance was considerably poorer in the area with less vegetation cover. Furthermore, spatial transferability of vegetation indices was not feasible in this region, underlining the importance of repeated model building. This study indicates that upcoming space-borne hyperspectral sensors increase the performance of biomass prediction in the world’s arid environments

EO-1/Hyperion: Nearing Twelve Years of Successful Mission Science Operation and Future Plans

The Earth Observing One (EO-1) satellite is a technology demonstration mission that was launched in November 2000, and by July 2012 will have successfully completed almost 12 years of high spatial resolution (30 m) imaging operations from a low Earth orbit. EO-1 has two unique instruments, the Hyperion and the Advanced Land Imager (ALI). Both instruments have served as prototypes for NASA's newer satellite missions, including the forthcoming (in early 2013) Landsat-8 and the future Hyperspectral Infrared Imager (HyspIRI). As well, EO-1 is a heritage platform for the upcoming German satellite, EnMAP (2015). Here, we provide an overview of the mission, and highlight the capabilities of the Hyperion for support of science investigations, and present prototype products developed with Hyperion imagery for the HyspIRI and other space-borne spectrometers

Quantification and Mapping of Surface Residue Cover for Maize and Soybean Fields in South Central Nebraska

The area cultivated under conservation tillage practices such as no-till and minimal tillage has recently increased in Midwestern states, including Nebraska. This increase, consequently, resulted in changes in some of the impacts of cropping systems on soil, such as enhancing soil and water quality, improving soil structure and infiltration, increasing water use efficiency, and promoting carbon sequestration. However, there are no methods currently available to quantify the percent crop residue cover (CRC) and the area under conservation tillage for maize and soybean at large scales on a continuous basis. This research used Landsat-7 (ETM+) and Landsat-8 (OLI) satellite data to evaluate six tillage indices [normalized difference tillage index (NDTI), normalized difference index 7 (NDI7), normalized difference index 5 (NDI5), normalized difference senescent vegetative index (NDSVI), modified CRC (ModCRC), and simple tillage index (STI)] to map CRC in eight counties in south central Nebraska. A linear regression CRC model showed that NDTI performed well in differentiating the CRC for different tillage practices at large scales, with a coefficient of determination (R2) of 0.62, 0.68, 0.78, and 0.07 for 25 March, 18 April, 28 May, and 6 June 2013 Landsat images, respectively. A minimum NDTI method was then used to spatially map the CRC on a regional scale by considering the timing of planting and tillage implementation. The measured CRC data were divided into training (calibration) and testing (validation) datasets. A CRC model was developed using the training dataset between minimum NDTI and measured CRC with an R2 of 0.89 (RMSD = 10.63%). A 3 × 3 matrix showed an overall accuracy of 0.90 with a kappa coefficient of 0.89. About 26% of the maize area and 15% of the soybean area had more than 70% CRC in south central Nebraska. This research and the procedures presented illustrate that multi-spectral Landsat images can be used to estimate and map CRC (error within 10.6%) on a regional scale and continuous basis using locally developed tillage practice versus crop residue algorithms. Further research is needed to incorporate soil and residue moisture content into the CRC versus tillage index to enhance the accuracy of the models for estimating CRC

EVALUATION OF A REMOTE SENSING BASED METHOD FOR THE ASSESSMENT OF AGRICULTURAL CROP RESIDUES ON THE SOIL SURFACE

Increased agricultural mechanization in the recent past and susceptibility of certain soils to degradation generate widespread concern among experts on the overall environmental sustainability of some of the current agricultural practices in Europe. A number of solutions could be adopted to better preserve soil resources, some of which are already supported by the Common Agricultural Policy (CAP). Researchers demonstrated that erosion and reduction in soil organic matter are among the most acute degradation issues in Europe and that the release of crop residues on the soil surface after harvesting can greatly reduce their incidence. The use of a permanent soil cover (e.g. by use of crop residues) is one of the three fundamental principles of Conservation Agriculture. Quantifying the amount of crop residues on the ground is important for soil and water protection, modelling of erosion processes and legislation enforcement purposes. However, common monitoring methods based on ground sampling are expensive and likely to be impracticable on vast surfaces. Remote sensing can offer a valid alternative for monitoring. The present research intends to contribute to the efforts towards the establishments of methods for the assessment and monitoring, through remote sensing, of the effects of conservation agriculture practices on the environment, with focus on soil resources. In this respect, the research specific objective is the evaluation of a remote sensing based method for the quantification of crop residue cover in a conservation agriculture farm in Northern Italy by use of hyperspectral satellite imagery. Results achieved show that not only crop residues percent cover is linearly related to certain remote sensing-based indices, therefore making possible to estimate how well soil is preserved from weathering, but also that spaceborne hyperspectral sensors such as Hyperion appear to have great potentiality towards monitoring of other environmental targets due to their very high spectral and spatial resolution. The research was deeply inspired by the outcomes of a European project (\u201cSustainable Agriculture and Soil Conservation through simplified cultivation techniques\u201d - SoCo) aimed at improving protection of soil resources in the European agriculture sector through a stock taking and promotion of soil-friendly agriculture practices and systems, in particular simplified cultivation techniques, within the current legislative framework

Remote Sensing of Ecology, Biodiversity and Conservation: A Review from the Perspective of Remote Sensing Specialists

Remote sensing, the science of obtaining information via noncontact recording, has swept the fields of ecology, biodiversity and conservation (EBC). Several quality review papers have contributed to this field. However, these papers often discuss the issues from the standpoint of an ecologist or a biodiversity specialist. This review focuses on the spaceborne remote sensing of EBC from the perspective of remote sensing specialists, i.e., it is organized in the context of state-of-the-art remote sensing technology, including instruments and techniques. Herein, the instruments to be discussed consist of high spatial resolution, hyperspectral, thermal infrared, small-satellite constellation, and LIDAR sensors; and the techniques refer to image classification, vegetation index (VI), inversion algorithm, data fusion, and the integration of remote sensing (RS) and geographic information system (GIS)

QUANTIFYING GRASSLAND NON-PHOTOSYNTHETIC VEGETATION BIOMASS USING REMOTE SENSING DATA

Non-photosynthetic vegetation (NPV) refers to vegetation that cannot perform a photosynthetic function. NPV, including standing dead vegetation and surface plant litter, plays a vital role in maintaining ecosystem function through controlling carbon, water and nutrient uptake as well as natural fire frequency and intensity in diverse ecosystems such as forest, savannah, wetland, cropland, and grassland. Due to its ecological importance, NPV has been selected as an indicator of grassland ecosystem health by the Alberta Public Lands Administration in Canada. The ecological importance of NPV has driven considerable research on quantifying NPV biomass with remote sensing approaches in various ecosystems. Although remote images, especially hyperspectral images, have demonstrated potential for use in NPV estimation, there has not been a way to quantify NPV biomass in semiarid grasslands where NPV biomass is affected by green vegetation (PV), bare soil and biological soil crust (BSC). The purpose of this research is to find a solution to quantitatively estimate NPV biomass with remote sensing approaches in semiarid mixed grasslands. Research was conducted in Grasslands National Park (GNP), a parcel of semiarid mixed prairie grassland in southern Saskatchewan, Canada. Multispectral images, including newly operational Landsat 8 Operational Land Imager (OLI) and Sentinel-2A Multi-spectral Instrument (MSIs) images and fine Quad-pol Radarsat-2 images were used for estimating NPV biomass in early, middle, and peak growing seasons via a simple linear regression approach. The results indicate that multispectral Landsat 8 OLI and Sentinel-2A MSIs have potential to quantify NPV biomass in peak and early senescence growing seasons. Radarsat-2 can also provide a solution for NPV biomass estimation. However, the performance of Radarsat-2 images is greatly affected by incidence angle of the image acquisition. This research filled a critical gap in applying remote sensing approaches to quantify NPV biomass in grassland ecosystems. NPV biomass estimates and approaches for estimating NPV biomass will contribute to grassland ecosystem health assessment (EHA) and natural resource (i.e. land, soil, water, plant, and animal) management

Selection of Hyperspectral Narrowbands (HNBs) and Composition of Hyperspectral Twoband Vegetation Indices (HVIs) for Biophysical Characterization and Discrimination of Crop Types Using Field Reflectance and Hyperion/EO-1 Data

The overarching goal of this study was to establish optimal hyperspectral vegetation indices (HVIs) and hyperspectral narrowbands (HNBs) that best characterize, classify, model, and map the world's main agricultural crops. The primary objectives were: (1) crop biophysical modeling through HNBs and HVIs, (2) accuracy assessment of crop type discrimination using Wilks' Lambda through a discriminant model, and (3) meta-analysis to select optimal HNBs and HVIs for applications related to agriculture. The study was conducted using two Earth Observing One (EO-1) Hyperion scenes and other surface hyperspectral data for the eight leading worldwide crops (wheat, corn, rice, barley, soybeans, pulses, cotton, and alfalfa) that occupy ~70% of all cropland areas globally. This study integrated data collected from multiple study areas in various agroecosystems of Africa, the Middle East, Central Asia, and India. Data were collected for the eight crop types in six distinct growth stages. These included (a) field spectroradiometer measurements (350-2500 nm) sampled at 1-nm discrete bandwidths, and (b) field biophysical variables (e.g., biomass, leaf area index) acquired to correspond with spectroradiometer measurements. The eight crops were described and classified using ~20 HNBs. The accuracy of classifying these 8 crops using HNBs was around 95%, which was ~ 25% better than the multi-spectral results possible from Landsat-7's Enhanced Thematic Mapper+ or EO-1's Advanced Land Imager. Further, based on this research and meta-analysis involving over 100 papers, the study established 33 optimal HNBs and an equal number of specific two-band normalized difference HVIs to best model and study specific biophysical and biochemical quantities of major agricultural crops of the world. Redundant bands identified in this study will help overcome the Hughes Phenomenon (or “the curse of high dimensionality”) in hyperspectral data for a particular application (e.g., biophysi- al characterization of crops). The findings of this study will make a significant contribution to future hyperspectral missions such as NASA's HyspIRI