Incremental View Maintenance For Collection Programming

In the context of incremental view maintenance (IVM), delta query derivation is an essential technique for speeding up the processing of large, dynamic datasets. The goal is to generate delta queries that, given a small change in the input, can update the materialized view more efficiently than via recomputation. In this work we propose the first solution for the efficient incrementalization of positive nested relational calculus (NRC+) on bags (with integer multiplicities). More precisely, we model the cost of NRC+ operators and classify queries as efficiently incrementalizable if their delta has a strictly lower cost than full re-evaluation. Then, we identify IncNRC+; a large fragment of NRC+ that is efficiently incrementalizable and we provide a semantics-preserving translation that takes any NRC+ query to a collection of IncNRC+ queries. Furthermore, we prove that incremental maintenance for NRC+ is within the complexity class NC0 and we showcase how recursive IVM, a technique that has provided significant speedups over traditional IVM in the case of flat queries [25], can also be applied to IncNRC+.Comment: 24 pages (12 pages plus appendix

Peer Data Management

Peer Data Management (PDM) deals with the management of structured data in unstructured peer-to-peer (P2P) networks. Each peer can store data locally and define relationships between its data and the data provided by other peers. Queries posed to any of the peers are then answered by also considering the information implied by those mappings. The overall goal of PDM is to provide semantically well-founded integration and exchange of heterogeneous and distributed data sources. Unlike traditional data integration systems, peer data management systems (PDMSs) thereby allow for full autonomy of each member and need no central coordinator. The promise of such systems is to provide flexible data integration and exchange at low setup and maintenance costs. However, building such systems raises many challenges. Beside the obvious scalability problem, choosing an appropriate semantics that can deal with arbitrary, even cyclic topologies, data inconsistencies, or updates while at the same time allowing for tractable reasoning has been an area of active research in the last decade. In this survey we provide an overview of the different approaches suggested in the literature to tackle these problems, focusing on appropriate semantics for query answering and data exchange rather than on implementation specific problems

Provenance in Collaborative Data Sharing

This dissertation focuses on recording, maintaining and exploiting provenance information in Collaborative Data Sharing Systems (CDSS). These are systems that support data sharing across loosely-coupled, heterogeneous collections of relational databases related by declarative schema mappings. A fundamental challenge in a CDSS is to support the capability of update exchange --- which publishes a participant\u27s updates and then translates others\u27 updates to the participant\u27s local schema and imports them --- while tolerating disagreement between them and recording the provenance of exchanged data, i.e., information about the sources and mappings involved in their propagation. This provenance information can be useful during update exchange, e.g., to evaluate provenance-based trust policies. It can also be exploited after update exchange, to answer a variety of user queries, about the quality, uncertainty or authority of the data, for applications such as trust assessment, ranking for keyword search over databases, or query answering in probabilistic databases. To address these challenges, in this dissertation we develop a novel model of provenance graphs that is informative enough to satisfy the needs of CDSS users and captures the semantics of query answering on various forms of annotated relations. We extend techniques from data integration, data exchange, incremental view maintenance and view update to define the formal semantics of unidirectional and bidirectional update exchange. We develop algorithms to perform update exchange incrementally while maintaining provenance information. We present strategies for implementing our techniques over an RDBMS and experimentally demonstrate their viability in the Orchestra prototype system. We define ProQL, a query language for provenance graphs that can be used by CDSS users to combine data querying with provenance testing as well as to compute annotations for their data, based on their provenance, that are useful for a variety of applications. Finally, we develop a prototype implementation ProQL over an RDBMS and indexing techniques to speed up provenance querying, evaluate experimentally the performance of provenance querying and the benefits of our indexing techniques

Metadata-driven data integration

Cotutela: Universitat Politècnica de Catalunya i Université Libre de Bruxelles, IT4BI-DC programme for the joint Ph.D. degree in computer science.Data has an undoubtable impact on society. Storing and processing large amounts of available data is currently one of the key success factors for an organization. Nonetheless, we are recently witnessing a change represented by huge and heterogeneous amounts of data. Indeed, 90% of the data in the world has been generated in the last two years. Thus, in order to carry on these data exploitation tasks, organizations must first perform data integration combining data from multiple sources to yield a unified view over them. Yet, the integration of massive and heterogeneous amounts of data requires revisiting the traditional integration assumptions to cope with the new requirements posed by such data-intensive settings. This PhD thesis aims to provide a novel framework for data integration in the context of data-intensive ecosystems, which entails dealing with vast amounts of heterogeneous data, from multiple sources and in their original format. To this end, we advocate for an integration process consisting of sequential activities governed by a semantic layer, implemented via a shared repository of metadata. From an stewardship perspective, this activities are the deployment of a data integration architecture, followed by the population of such shared metadata. From a data consumption perspective, the activities are virtual and materialized data integration, the former an exploratory task and the latter a consolidation one. Following the proposed framework, we focus on providing contributions to each of the four activities. We begin proposing a software reference architecture for semantic-aware data-intensive systems. Such architecture serves as a blueprint to deploy a stack of systems, its core being the metadata repository. Next, we propose a graph-based metadata model as formalism for metadata management. We focus on supporting schema and data source evolution, a predominant factor on the heterogeneous sources at hand. For virtual integration, we propose query rewriting algorithms that rely on the previously proposed metadata model. We additionally consider semantic heterogeneities in the data sources, which the proposed algorithms are capable of automatically resolving. Finally, the thesis focuses on the materialized integration activity, and to this end, proposes a method to select intermediate results to materialize in data-intensive flows. Overall, the results of this thesis serve as contribution to the field of data integration in contemporary data-intensive ecosystems.Les dades tenen un impacte indubtable en la societat. La capacitat d’emmagatzemar i processar grans quantitats de dades disponibles és avui en dia un dels factors claus per l’èxit d’una organització. No obstant, avui en dia estem presenciant un canvi representat per grans volums de dades heterogenis. En efecte, el 90% de les dades mundials han sigut generades en els últims dos anys. Per tal de dur a terme aquestes tasques d’explotació de dades, les organitzacions primer han de realitzar una integració de les dades, combinantles a partir de diferents fonts amb l’objectiu de tenir-ne una vista unificada d’elles. Per això, aquest fet requereix reconsiderar les assumpcions tradicionals en integració amb l’objectiu de lidiar amb els requisits imposats per aquests sistemes de tractament massiu de dades. Aquesta tesi doctoral té com a objectiu proporcional un nou marc de treball per a la integració de dades en el context de sistemes de tractament massiu de dades, el qual implica lidiar amb una gran quantitat de dades heterogènies, provinents de múltiples fonts i en el seu format original. Per això, proposem un procés d’integració compost d’una seqüència d’activitats governades per una capa semàntica, la qual és implementada a partir d’un repositori de metadades compartides. Des d’una perspectiva d’administració, aquestes activitats són el desplegament d’una arquitectura d’integració de dades, seguit per la inserció d’aquestes metadades compartides. Des d’una perspectiva de consum de dades, les activitats són la integració virtual i materialització de les dades, la primera sent una tasca exploratòria i la segona una de consolidació. Seguint el marc de treball proposat, ens centrem en proporcionar contribucions a cada una de les quatre activitats. La tesi inicia proposant una arquitectura de referència de software per a sistemes de tractament massiu de dades amb coneixement semàntic. Aquesta arquitectura serveix com a planell per a desplegar un conjunt de sistemes, sent el repositori de metadades al seu nucli. Posteriorment, proposem un model basat en grafs per a la gestió de metadades. Concretament, ens centrem en donar suport a l’evolució d’esquemes i fonts de dades, un dels factors predominants en les fonts de dades heterogènies considerades. Per a l’integració virtual, proposem algorismes de rescriptura de consultes que usen el model de metadades previament proposat. Com a afegitó, considerem heterogeneïtat semàntica en les fonts de dades, les quals els algorismes de rescriptura poden resoldre automàticament. Finalment, la tesi es centra en l’activitat d’integració materialitzada. Per això proposa un mètode per a seleccionar els resultats intermedis a materialitzar un fluxes de tractament intensiu de dades. En general, els resultats d’aquesta tesi serveixen com a contribució al camp d’integració de dades en els ecosistemes de tractament massiu de dades contemporanisLes données ont un impact indéniable sur la société. Le stockage et le traitement de grandes quantités de données disponibles constituent actuellement l’un des facteurs clés de succès d’une entreprise. Néanmoins, nous assistons récemment à un changement représenté par des quantités de données massives et hétérogènes. En effet, 90% des données dans le monde ont été générées au cours des deux dernières années. Ainsi, pour mener à bien ces tâches d’exploitation des données, les organisations doivent d’abord réaliser une intégration des données en combinant des données provenant de sources multiples pour obtenir une vue unifiée de ces dernières. Cependant, l’intégration de quantités de données massives et hétérogènes nécessite de revoir les hypothèses d’intégration traditionnelles afin de faire face aux nouvelles exigences posées par les systèmes de gestion de données massives. Cette thèse de doctorat a pour objectif de fournir un nouveau cadre pour l’intégration de données dans le contexte d’écosystèmes à forte intensité de données, ce qui implique de traiter de grandes quantités de données hétérogènes, provenant de sources multiples et dans leur format d’origine. À cette fin, nous préconisons un processus d’intégration constitué d’activités séquentielles régies par une couche sémantique, mise en oeuvre via un dépôt partagé de métadonnées. Du point de vue de la gestion, ces activités consistent à déployer une architecture d’intégration de données, suivies de la population de métadonnées partagées. Du point de vue de la consommation de données, les activités sont l’intégration de données virtuelle et matérialisée, la première étant une tâche exploratoire et la seconde, une tâche de consolidation. Conformément au cadre proposé, nous nous attachons à fournir des contributions à chacune des quatre activités. Nous commençons par proposer une architecture logicielle de référence pour les systèmes de gestion de données massives et à connaissance sémantique. Une telle architecture consiste en un schéma directeur pour le déploiement d’une pile de systèmes, le dépôt de métadonnées étant son composant principal. Ensuite, nous proposons un modèle de métadonnées basé sur des graphes comme formalisme pour la gestion des métadonnées. Nous mettons l’accent sur la prise en charge de l’évolution des schémas et des sources de données, facteur prédominant des sources hétérogènes sous-jacentes. Pour l’intégration virtuelle, nous proposons des algorithmes de réécriture de requêtes qui s’appuient sur le modèle de métadonnées proposé précédemment. Nous considérons en outre les hétérogénéités sémantiques dans les sources de données, que les algorithmes proposés sont capables de résoudre automatiquement. Enfin, la thèse se concentre sur l’activité d’intégration matérialisée et propose à cette fin une méthode de sélection de résultats intermédiaires à matérialiser dans des flux des données massives. Dans l’ensemble, les résultats de cette thèse constituent une contribution au domaine de l’intégration des données dans les écosystèmes contemporains de gestion de données massivesPostprint (published version

Modern data analytics in the cloud era

Cloud Computing ist die dominante Technologie des letzten Jahrzehnts. Die Benutzerfreundlichkeit der verwalteten Umgebung in Kombination mit einer nahezu unbegrenzten Menge an Ressourcen und einem nutzungsabhängigen Preismodell ermöglicht eine schnelle und kosteneffiziente Projektrealisierung für ein breites Nutzerspektrum. Cloud Computing verändert auch die Art und Weise wie Software entwickelt, bereitgestellt und genutzt wird. Diese Arbeit konzentriert sich auf Datenbanksysteme, die in der Cloud-Umgebung eingesetzt werden. Wir identifizieren drei Hauptinteraktionspunkte der Datenbank-Engine mit der Umgebung, die veränderte Anforderungen im Vergleich zu traditionellen On-Premise-Data-Warehouse-Lösungen aufweisen. Der erste Interaktionspunkt ist die Interaktion mit elastischen Ressourcen. Systeme in der Cloud sollten Elastizität unterstützen, um den Lastanforderungen zu entsprechen und dabei kosteneffizient zu sein. Wir stellen einen elastischen Skalierungsmechanismus für verteilte Datenbank-Engines vor, kombiniert mit einem Partitionsmanager, der einen Lastausgleich bietet und gleichzeitig die Neuzuweisung von Partitionen im Falle einer elastischen Skalierung minimiert. Darüber hinaus führen wir eine Strategie zum initialen Befüllen von Puffern ein, die es ermöglicht, skalierte Ressourcen unmittelbar nach der Skalierung auszunutzen. Cloudbasierte Systeme sind von fast überall aus zugänglich und verfügbar. Daten werden häufig von zahlreichen Endpunkten aus eingespeist, was sich von ETL-Pipelines in einer herkömmlichen Data-Warehouse-Lösung unterscheidet. Viele Benutzer verzichten auf die Definition von strikten Schemaanforderungen, um Transaktionsabbrüche aufgrund von Konflikten zu vermeiden oder um den Ladeprozess von Daten zu beschleunigen. Wir führen das Konzept der PatchIndexe ein, die die Definition von unscharfen Constraints ermöglichen. PatchIndexe verwalten Ausnahmen zu diesen Constraints, machen sie für die Optimierung und Ausführung von Anfragen nutzbar und bieten effiziente Unterstützung bei Datenaktualisierungen. Das Konzept kann auf beliebige Constraints angewendet werden und wir geben Beispiele für unscharfe Eindeutigkeits- und Sortierconstraints. Darüber hinaus zeigen wir, wie PatchIndexe genutzt werden können, um fortgeschrittene Constraints wie eine unscharfe Multi-Key-Partitionierung zu definieren, die eine robuste Anfrageperformance bei Workloads mit unterschiedlichen Partitionsanforderungen bietet. Der dritte Interaktionspunkt ist die Nutzerinteraktion. Datengetriebene Anwendungen haben sich in den letzten Jahren verändert. Neben den traditionellen SQL-Anfragen für Business Intelligence sind heute auch datenwissenschaftliche Anwendungen von großer Bedeutung. In diesen Fällen fungiert das Datenbanksystem oft nur als Datenlieferant, während der Rechenaufwand in dedizierten Data-Science- oder Machine-Learning-Umgebungen stattfindet. Wir verfolgen das Ziel, fortgeschrittene Analysen in Richtung der Datenbank-Engine zu verlagern und stellen das Grizzly-Framework als DataFrame-zu-SQL-Transpiler vor. Auf dieser Grundlage identifizieren wir benutzerdefinierte Funktionen (UDFs) und maschinelles Lernen (ML) als wichtige Aufgaben, die von einer tieferen Integration in die Datenbank-Engine profitieren würden. Daher untersuchen und bewerten wir Ansätze für die datenbankinterne Ausführung von Python-UDFs und datenbankinterne ML-Inferenz.Cloud computing has been the groundbreaking technology of the last decade. The ease-of-use of the managed environment in combination with nearly infinite amount of resources and a pay-per-use price model enables fast and cost-efficient project realization for a broad range of users. Cloud computing also changes the way software is designed, deployed and used. This thesis focuses on database systems deployed in the cloud environment. We identify three major interaction points of the database engine with the environment that show changed requirements compared to traditional on-premise data warehouse solutions. First, software is deployed on elastic resources. Consequently, systems should support elasticity in order to match workload requirements and be cost-effective. We present an elastic scaling mechanism for distributed database engines, combined with a partition manager that provides load balancing while minimizing partition reassignments in the case of elastic scaling. Furthermore we introduce a buffer pre-heating strategy that allows to mitigate a cold start after scaling and leads to an immediate performance benefit using scaling. Second, cloud based systems are accessible and available from nearly everywhere. Consequently, data is frequently ingested from numerous endpoints, which differs from bulk loads or ETL pipelines in a traditional data warehouse solution. Many users do not define database constraints in order to avoid transaction aborts due to conflicts or to speed up data ingestion. To mitigate this issue we introduce the concept of PatchIndexes, which allow the definition of approximate constraints. PatchIndexes maintain exceptions to constraints, make them usable in query optimization and execution and offer efficient update support. The concept can be applied to arbitrary constraints and we provide examples of approximate uniqueness and approximate sorting constraints. Moreover, we show how PatchIndexes can be exploited to define advanced constraints like an approximate multi-key partitioning, which offers robust query performance over workloads with different partition key requirements. Third, data-centric workloads changed over the last decade. Besides traditional SQL workloads for business intelligence, data science workloads are of significant importance nowadays. For these cases the database system might only act as data delivery, while the computational effort takes place in data science or machine learning (ML) environments. As this workflow has several drawbacks, we follow the goal of pushing advanced analytics towards the database engine and introduce the Grizzly framework as a DataFrame-to-SQL transpiler. Based on this we identify user-defined functions (UDFs) and machine learning inference as important tasks that would benefit from a deeper engine integration and investigate approaches to push these operations towards the database engine

Challenges in Integrating Biological Data Sources

this report, we examine the technical challenges to integration, critique the available tools and resources, and compare the cost and advantages of various methodologies. We begin by analyzing the basic steps in strict and complete integration: 1) transformation of the various schemas to a common data model; 2) matching of semantically related schema objects; 3) schema integration; 4) transformation of data to the federated database on demand; and 5) matching of semantically equivalent data. Some progress has been made on generic problems such as (1) and (3) within the wider database community, but issues of semantics (steps (2) and (5)) have only been dealt with any degree of success by domain experts within the biological community. We then look at the solution space of integration strategies as defined by two axes, the "tightness" of federation and the "degree" of instantiation, discuss where various solutions fall on this plane, and examine their cost and advantages/disadvantages. Finally, we examine technical challenges that are not -3- July 12, 199

Compilation Techniques for Incremental Collection Processing

Many map-reduce frameworks as well as NoSQL systems rely on collection programming as their interface of choice due to its rich semantics along with an easily parallelizable set of primitives. Unfortunately, the potential of collection programming is not entirely fulfilled by current systems as they lack efficient incremental view maintenance (IVM) techniques for queries producing large nested results. This comes as a consequence of the fact that the nesting of collections does not enjoy the same algebraic properties underscoring the optimization potential of typical collection processing constructs. We propose the first solution for the efficient incrementalization of collection programming in terms of its core constructs as captured by the positive nested relational calculus (NRC+) on bags (with integer multiplicities). We take an approach based on delta query derivation, whose goal is to generate delta queries which, given a small change in the input, can update the materialized view more efficiently than via recomputation. More precisely, we model the cost of NRC+ operators and classify queries as efficiently incrementalizable if their delta has a strictly lower cost than full re-evaluation. Then, we identify IncNRC+, a large fragment of NRC+ that is efficiently incrementalizable and we provide a semantics-preserving translation that takes any NRC+ query to a collection of IncNRC+ queries. Furthermore, we prove that incrementalmaintenance for NRC+ is within the complexity class NC0 and we showcase how Recursive IVM, a technique that has provided significant speedups over traditional IVM in the case of flat queries, can also be applied to IncNRC+ . Existing systems are also limited wrt. the size of inner collections that they can effectively handle before running into severe performance bottlenecks. In particular, in the face of nested collections with skewed cardinalities developers typically have to undergo a painful process of manual query re-writes in order to ensure that the largest inner collections in their workloads are not impacted by these limitations. To address these issues we developed SLeNDer, a compilation framework that given a nested query generates a set of semantically equivalent (partially) shredded queries that can be efficiently evaluated and incrementalized using state of the art techniques for handling skew and applying delta changes, respectively. The derived queries expose nested collections to the same opportunities for distributing their processing and incrementally updating their contents as those enjoyed by top-level collections, leading on our benchmark to up to 16.8x and 21.9x speedups in terms of offline and online processing, respectively. In order to enable efficient IVM for the increasingly common case of collection programming with functional values as in Links, we also discuss the efficient incrementalization of simplytyped lambda calculi, under the constraint that their primitives are themselves efficiently incrementalizable

Efficient Online Processing for Advanced Analytics

With the advent of emerging technologies and the Internet of Things, the importance of online data analytics has become more pronounced. Businesses and companies are adopting approaches that provide responsive analytics to stay competitive in the global marketplace. Online analytics allow data analysts to promptly react to patterns or to gain preliminary insights from early results that aid in research, decision making, and effective strategy planning. The growth of data-velocity in a variety of domains including, high-frequency trading, social networks, infrastructure monitoring, and advertising require adopting online engines that can efficiently process continuous streams of data. This thesis presents foundations, techniques, and systems' design that extend the state-of-the-art in online query processing to efficiently support relational joins with arbitrary join-predicates (beyond traditional equi-joins); and to support other data models (beyond relational) that target machine learning and graph computations. The thesis is divided into two parts: We first present a brief overview of Squall, our open-source online query processing engine that supports SQL-like queries on top of streams. Then, we focus on extending Squall to support efficient theta-join processing. Scalable distributed join processing requires a partitioning policy that evenly distributes the processing load while minimizing the size of maintained state and duplicated messages. Efficient load-balance demands apriori-statistics which are not available in the online setting. We propose a novel operator that continuously adjusts itself to the data dynamics, through adaptive dataflow routing and state repartitioning. It is also resilient to data-skew, maintains high throughput rates, avoids blocking during state repartitioning, and behaves as a black-box dataflow operator with provable performance guarantees. Our evaluation demonstrates that the proposed operator outperforms the state-of-the-art static partitioning schemes in resource utilization, throughput, and execution time up to 7x. In the second part, we present a novel framework that supports the Incremental View Maintenance (IVM) of workloads expressed as linear algebra programs. Linear algebra represents a concrete substrate for advanced analytical tasks including, machine learning, scientific computation, and graph algorithms. Previous works on relational calculus IVM are not applicable to matrix algebra workloads. This is because a single entry change to an input-matrix results in changes all over the intermediate views, rendering IVM useless in comparison to re-evaluation. We present Lago, a unified modular compiler framework that supports the IVM of a broad class of linear algebra programs. Lago automatically derives and optimizes incremental trigger programs of analytical computations, while freeing the user from erroneous manual derivations, low-level implementation details, and performance tuning. We present a novel technique that captures $\Delta$ changes as low-rank matrices. Low-rank matrices are representable in a compressed factored form that enables cheaper computations. Lago automatically propagates the factored representation across program statements to derive an efficient trigger program. Moreover, Lago extends its support to other domains that use different semi-ring configurations, e.g., graph applications. Our evaluation results demonstrate orders of magnitude (10x-1