Numerical Integration and Dynamic Discretization in Heuristic Search Planning over Hybrid Domains

In this paper we look into the problem of planning over hybrid domains, where change can be both discrete and instantaneous, or continuous over time. In addition, it is required that each state on the trajectory induced by the execution of plans complies with a given set of global constraints. We approach the computation of plans for such domains as the problem of searching over a deterministic state model. In this model, some of the successor states are obtained by solving numerically the so-called initial value problem over a set of ordinary differential equations (ODE) given by the current plan prefix. These equations hold over time intervals whose duration is determined dynamically, according to whether zero crossing events take place for a set of invariant conditions. The resulting planner, FS+, incorporates these features together with effective heuristic guidance. FS+ does not impose any of the syntactic restrictions on process effects often found on the existing literature on Hybrid Planning. A key concept of our approach is that a clear separation is struck between planning and simulation time steps. The former is the time allowed to observe the evolution of a given dynamical system before committing to a future course of action, whilst the later is part of the model of the environment. FS+ is shown to be a robust planner over a diverse set of hybrid domains, taken from the existing literature on hybrid planning and systems.Comment: 17 page

Logical and deep learning methods for temporal reasoning

In this thesis, we study logical and deep learning methods for the temporal reasoning of reactive systems. In Part I, we determine decidability borders for the satisfiability and realizability problem of temporal hyperproperties. Temporal hyperproperties relate multiple computation traces to each other and are expressed in a temporal hyperlogic. In particular, we identify decidable fragments of the highly expressive hyperlogics HyperQPTL and HyperCTL*. As an application, we elaborate on an enforcement mechanism for temporal hyperproperties. We study explicit enforcement algorithms for specifications given as formulas in universally quantified HyperLTL. In Part II, we train a (deep) neural network on the trace generation and realizability problem of linear-time temporal logic (LTL). We consider a method to generate large amounts of additional training data from practical specification patterns. The training data is generated with classical solvers, which provide one of many possible solutions to each formula. We demonstrate that it is sufficient to train on those particular solutions such that the neural network generalizes to the semantics of the logic. The neural network can predict solutions even for formulas from benchmarks from the literature on which the classical solver timed out. Additionally, we show that it solves a significant portion of problems from the annual synthesis competition (SYNTCOMP) and even out-of-distribution examples from a recent case study.Diese Arbeit befasst sich mit logischen Methoden und mehrschichtigen Lernmethoden für das zeitabhängige Argumentieren über reaktive Systeme. In Teil I werden die Grenzen der Entscheidbarkeit des Erfüllbarkeits- und des Realisierbarkeitsproblem von temporalen Hypereigenschaften bestimmt. Temporale Hypereigenschaften setzen mehrere Berechnungsspuren zueinander in Beziehung und werden in einer temporalen Hyperlogik ausgedrückt. Insbesondere werden entscheidbare Fragmente der hochexpressiven Hyperlogiken HyperQPTL und HyperCTL* identifiziert. Als Anwendung wird ein Enforcement-Mechanismus für temporale Hypereigenschaften erarbeitet. Explizite Enforcement-Algorithmen für Spezifikationen, die als Formeln in universell quantifiziertem HyperLTL angegeben werden, werden untersucht. In Teil II wird ein (mehrschichtiges) neuronales Netz auf den Problemen der Spurgenerierung und Realisierbarkeit von Linear-zeit Temporallogik (LTL) trainiert. Es wird eine Methode betrachtet, um aus praktischen Spezifikationsmustern große Mengen zusätzlicher Trainingsdaten zu generieren. Die Trainingsdaten werden mit klassischen Solvern generiert, die zu jeder Formel nur eine von vielen möglichen Lösungen liefern. Es wird gezeigt, dass es ausreichend ist, an diesen speziellen Lösungen zu trainieren, sodass das neuronale Netz zur Semantik der Logik generalisiert. Das neuronale Netz kann Lösungen sogar für Formeln aus Benchmarks aus der Literatur vorhersagen, bei denen der klassische Solver eine Zeitüberschreitung hatte. Zusätzlich wird gezeigt, dass das neuronale Netz einen erheblichen Teil der Probleme aus dem jährlichen Synthesewettbewerb (SYNTCOMP) und sogar Beispiele außerhalb der Distribution aus einer aktuellen Fallstudie lösen kann

An Agent-based Architecture for AI-Enhanced Automated Testing for XR Systems, a Short Paper

This short paper presents an architectural overview of an agent-based framework called iv4XR for automated testing that is currently under development by an H2020 project with the same name. The framework's intended main use case of is testing the family of Extended Reality (XR) based systems (e.g. 3D games, VR sytems, AR systems), though the approach can indeed be adapted to target other types of interactive systems. The framework is unique in that it is an agent-based system. Agents are inherently reactive, and therefore are arguably a natural match to deal with interactive systems. Moreover, it is also a natural vessel for mounting and combining different AI capabilities, e.g. reasoning, navigation, and learning

A Survey of Symbolic Execution Techniques

Many security and software testing applications require checking whether certain properties of a program hold for any possible usage scenario. For instance, a tool for identifying software vulnerabilities may need to rule out the existence of any backdoor to bypass a program's authentication. One approach would be to test the program using different, possibly random inputs. As the backdoor may only be hit for very specific program workloads, automated exploration of the space of possible inputs is of the essence. Symbolic execution provides an elegant solution to the problem, by systematically exploring many possible execution paths at the same time without necessarily requiring concrete inputs. Rather than taking on fully specified input values, the technique abstractly represents them as symbols, resorting to constraint solvers to construct actual instances that would cause property violations. Symbolic execution has been incubated in dozens of tools developed over the last four decades, leading to major practical breakthroughs in a number of prominent software reliability applications. The goal of this survey is to provide an overview of the main ideas, challenges, and solutions developed in the area, distilling them for a broad audience. The present survey has been accepted for publication at ACM Computing Surveys. If you are considering citing this survey, we would appreciate if you could use the following BibTeX entry: http://goo.gl/Hf5FvcComment: This is the authors pre-print copy. If you are considering citing this survey, we would appreciate if you could use the following BibTeX entry: http://goo.gl/Hf5Fv

Computational methods and tools for protein phosphorylation analysis

Signaling pathways represent a central regulatory mechanism of biological systems where a key event in their correct functioning is the reversible phosphorylation of proteins. Protein phosphorylation affects at least one-third of all proteins and is the most widely studied posttranslational modification. Phosphorylation analysis is still perceived, in general, as difficult or cumbersome and not readily attempted by many, despite the high value of such information. Specifically, determining the exact location of a phosphorylation site is currently considered a major hurdle, thus reliable approaches are necessary for the detection and localization of protein phosphorylation. The goal of this PhD thesis was to develop computation methods and tools for mass spectrometry-based protein phosphorylation analysis, particularly validation of phosphorylation sites. In the first two studies, we developed methods for improved identification of phosphorylation sites in MALDI-MS. In the first study it was achieved through the automatic combination of spectra from multiple matrices, while in the second study, an optimized protocol for sample loading and washing conditions was suggested. In the third study, we proposed and evaluated the hypothesis that in ESI-MS, tandem CID and HCD spectra of phosphopeptides can be accurately predicted and used in spectral library searching. This novel strategy for phosphosite validation and identification offered accuracy that outperformed the other currently existing popular methods and proved applicable to complex biological samples. And finally, we significantly improved the performance of our command-line prototype tool, added graphical user interface, and options for customizable simulation parameters and filtering of selected spectra, peptides or proteins. The new software, SimPhospho, is open-source and can be easily integrated in a phosphoproteomics data analysis workflow. Together, these bioinformatics methods and tools enable confident phosphosite assignment and improve reliable phosphoproteome identification and reportin

Formal Specification and Verification for Automated Production Systems

Complex industrial control software often drives safety- and mission-critical systems, like automated production plants or control units embedded into devices in automotive systems. Such controllers have in common that they are reactive systems, i.e., that they periodically read sensor stimuli and cyclically execute the same program to produce actuator signals. The correctness of software for automated production is rarely verified using formal techniques. Although, due to the Industrial Revolution 4.0 (IR4.0), the impact and importance of software have become an important role in industrial automation. What is used instead in industrial practice today is testing and simulation, where individual test cases are used to validate an automated production system. Three reasons why formal methods are not popular are: (a) It is difficult to adequately formulate the desired temporal properties. (b) There is a lack of specification languages for reactive systems that are both sufficiently expressive and comprehensible for practitioners. (c) Due to the lack of an environment model the obtained results are imprecise. Nonetheless, formal methods for automated production systems are well studied academically---mainly on the verification of safety properties via model checking. In this doctoral thesis we present the concept of (1) generalized test tables (GTTs), a new specification language for functional properties, and their extension (2) relational test tables (RTTs) for relational properties. The concept includes the syntactical notion, designed for the intuition of engineers, and the semantics, which are based on game theory. We use RTTs for a novel confidential property on reactive systems, the provably forgetting of information. Moreover, for regression verification, an important relational property, we are able to achieve performance improvements by (3) creating a decomposing rule which splits large proofs into small sub-task. We implemented the verification procedures and evaluated them against realistic case studies, e.g., the Pick-and-Place-Unit from the Technical University of Munich. The presented contribution follows the idea of lowering the obstacle of verifying the dependability of reactive systems in general, and automated production systems in particular for the engineer either by introducing a new specification language (GTTs), by exploiting existing programs for the specification (RTTs, regression verification), or by improving the verification performance

Web and Semantic Web Query Languages

A number of techniques have been developed to facilitate powerful data retrieval on the Web and Semantic Web. Three categories of Web query languages can be distinguished, according to the format of the data they can retrieve: XML, RDF and Topic Maps. This article introduces the spectrum of languages falling into these categories and summarises their salient aspects. The languages are introduced using common sample data and query types. Key aspects of the query languages considered are stressed in a conclusion