Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences

The aim of the Special Issue “Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences” was to present a selection of innovative studies using hyperspectral imaging (HSI) in different thematic fields. This intention reflects the technical developments in the last three decades, which have brought the capacity of HSI to provide spectrally, spatially and temporally detailed data, favoured by e.g., hyperspectral snapshot technologies, miniaturized hyperspectral sensors and hyperspectral microscopy imaging. The present book comprises a suite of papers in various fields of environmental sciences—geology/mineral exploration, digital soil mapping, mapping and characterization of vegetation, and sensing of water bodies (including under-ice and underwater applications). In addition, there are two rather methodically/technically-oriented contributions dealing with the optimized processing of UAV data and on the design and test of a multi-channel optical receiver for ground-based applications. All in all, this compilation documents that HSI is a multi-faceted research topic and will remain so in the future

The acquisition of Hyperspectral Digital Surface Models of crops from UAV snapshot cameras

This thesis develops a new approach to capture information about agricultural crops by utilizing advances in the field of robotics, sensor technology, computer vision and photogrammetry: Hyperspectral digital surface models (HS DSMs) generated with UAV snapshot cameras are a representation of a surface in 3D space linked with hyperspectral information emitted and reflected by the objects covered by that surface. The overall research aim of this thesis is to evaluate if HS DSMs are suited for supporting a site-specific crop management. Based on six research studies, three research objectives are discussed for this evaluation. Firstly the influences of environmental effects, the sensing system and data processing of the spectral data within HS DSMs are discussed. Secondly, the comparability of HS DSMs to data from other remote sensing methods is investigated and thirdly their potential to support site-specific crop management is evaluated. Most data within this thesis was acquired at a plant experimental-plot experiment in Klein-Altendorf, Germany, with six different barley varieties and two different fertilizer treatments in the growing seasons of 2013 and 2014. In total, 22 measurement campaigns were carried out in the context of this thesis. HS DSMs acquired with the hyperspectral snapshot cameras Cubert UHD 185-Firefly show great potential for practical applications. The combination of UAVs and the UHD allowed data to be captured at a high spatial, spectral and temporal resolution. The spatial resolution allowed detection of small-scale heterogeneities within the plant population. Additionally, with the spectral and 3D information contained in HS DSMs, plant parameters such as chlorophyll, biomass and plant height could be estimated within individual, and across different growing stages. The techniques developed in this thesis therefore offer a significant contribution towards increasing cropping efficiency through the support of site-specific management

Remote sensing image fusion on 3D scenarios: A review of applications for agriculture and forestry

Three-dimensional (3D) image mapping of real-world scenarios has a great potential to provide the user with a more accurate scene understanding. This will enable, among others, unsupervised automatic sampling of meaningful material classes from the target area for adaptive semi-supervised deep learning techniques. This path is already being taken by the recent and fast-developing research in computational fields, however, some issues related to computationally expensive processes in the integration of multi-source sensing data remain. Recent studies focused on Earth observation and characterization are enhanced by the proliferation of Unmanned Aerial Vehicles (UAV) and sensors able to capture massive datasets with a high spatial resolution. In this scope, many approaches have been presented for 3D modeling, remote sensing, image processing and mapping, and multi-source data fusion. This survey aims to present a summary of previous work according to the most relevant contributions for the reconstruction and analysis of 3D models of real scenarios using multispectral, thermal and hyperspectral imagery. Surveyed applications are focused on agriculture and forestry since these fields concentrate most applications and are widely studied. Many challenges are currently being overcome by recent methods based on the reconstruction of multi-sensorial 3D scenarios. In parallel, the processing of large image datasets has recently been accelerated by General-Purpose Graphics Processing Unit (GPGPU) approaches that are also summarized in this work. Finally, as a conclusion, some open issues and future research directions are presented.European Commission 1381202-GEU PYC20-RE-005-UJA IEG-2021Junta de Andalucia 1381202-GEU PYC20-RE-005-UJA IEG-2021Instituto de Estudios GiennesesEuropean CommissionSpanish Government UIDB/04033/2020DATI-Digital Agriculture TechnologiesPortuguese Foundation for Science and Technology 1381202-GEU FPU19/0010

On the Use of Unmanned Aerial Systems for Environmental Monitoring

Environmental monitoring plays a central role in diagnosing climate and management impacts on natural and agricultural systems; enhancing the understanding of hydrological processes; optimizing the allocation and distribution of water resources; and assessing, forecasting, and even preventing natural disasters. Nowadays, most monitoring and data collection systems are based upon a combination of ground-based measurements, manned airborne sensors, and satellite observations. These data are utilized in describing both small- and large-scale processes, but have spatiotemporal constraints inherent to each respective collection system. Bridging the unique spatial and temporal divides that limit current monitoring platforms is key to improving our understanding of environmental systems. In this context, Unmanned Aerial Systems (UAS) have considerable potential to radically improve environmental monitoring. UAS-mounted sensors offer an extraordinary opportunity to bridge the existing gap between field observations and traditional air- and space-borne remote sensing, by providing high spatial detail over relatively large areas in a cost-effective way and an entirely new capacity for enhanced temporal retrieval. As well as showcasing recent advances in the field, there is also a need to identify and understand the potential limitations of UAS technology. For these platforms to reach their monitoring potential, a wide spectrum of unresolved issues and application-specific challenges require focused community attention. Indeed, to leverage the full potential of UAS-based approaches, sensing technologies, measurement protocols, postprocessing techniques, retrieval algorithms, and evaluation techniques need to be harmonized. The aim of this paper is to provide an overview of the existing research and applications of UAS in natural and agricultural ecosystem monitoring in order to identify future directions, applications, developments, and challengespublishersversionPeer reviewe

UAVs for the Environmental Sciences

This book gives an overview of the usage of UAVs in environmental sciences covering technical basics, data acquisition with different sensors, data processing schemes and illustrating various examples of application

Multitemporal assessment of crop parameters using multisensorial flying platforms

UAV sensors suitable for precision farming (Sony NEX-5n RGB camera; Canon Powershot modified to infrared sensitivity; MCA6 Tetracam; UAV spectrometer) were compared over differently treated grassland. The high resolution infrared and RGB camera allows spatial analysis of vegetation cover while the UAV spectrometer enables detailed analysis of spectral reflectance at single points. The high spatial and six-band spectral resolution of the MCA6 combines the opportunities of spatial and spectral analysis, but requires huge calibration efforts to acquire reliable data. All investigated systems were able to provide useful information in different distinct research areas of interest in the spatial or spectral domain. The UAV spectrometer was further used to assess multiangular reflectance patterns of wheat. By flying the UAV in a hemispherical path and directing the spectrometer towards the center of this hemisphere, the system acts like a large goniometer. Other than ground based goniometers, this novel method allows huge diameters without any need for infrastructures on the ground. Our experimental results shows good agreement with models and other goniometers, proving the approach valid. UAVs are capable of providing airborne data with a high spatial and temporal resolution due to their flexible and easy use. This was demonstrated in a two year survey. A high resolution RGB camera was flown every week over experimental plots of barley. From the RGB imagery a time series of the barley development was created using the color values. From this analysis we could track differences in the growth of multiple seeding densities and identify events of plant development such as ear pushing. These results lead towards promising practical applications that could be used in breeding for the phenotyping of crop varieties or in the scope of precision farming. With the advent of high endurance UAVs such as airships and the development of better light weight sensors, an exciting future for remote sensing from UAV in agriculture is expected

Radiometric Correction of Multispectral UAS Images: Evaluating the Accuracy of the Parrot Sequoia Camera and Sunshine Sensor

Unmanned aerial systems (UAS) carrying commercially sold multispectral sensors equipped with a sunshine sensor, such as Parrot Sequoia, enable mapping of vegetation at high spatial resolution with a large degree of flexibility in planning data collection. It is, however, a challenge to perform radiometric correction of the images to create reflectance maps (orthomosaics with surface reflectance) and to compute vegetation indices with sufficient accuracy to enable comparisons between data collected at different times and locations. Studies have compared different radiometric correction methods applied to the Sequoia camera, but there is no consensus about a standard method that provides consistent results for all spectral bands and for different flight conditions. In this study, we perform experiments to assess the accuracy of the Parrot Sequoia camera and sunshine sensor to get an indication if the quality of the data collected is sufficient to create accurate reflectance maps. In addition, we study if there is an influence of the atmosphere on the images and suggest a workflow to collect and process images to create a reflectance map. The main findings are that the sensitivity of the camera is influenced by camera temperature and that the atmosphere influences the images. Hence, we suggest letting the camera warm up before image collection and capturing images of reflectance calibration panels at an elevation close to the maximum flying height to compensate for influence from the atmosphere. The results also show that there is a strong influence of the orientation of the sunshine sensor. This introduces noise and limits the use of the raw sunshine sensor data to compensate for differences in light conditions. To handle this noise, we fit smoothing functions to the sunshine sensor data before we perform irradiance normalization of the images. The developed workflow is evaluated against data from a handheld spectroradiometer, giving the highest correlation (R-2 = 0.99) for the normalized difference vegetation index (NDVI). For the individual wavelength bands, R-2 was 0.80-0.97 for the red-edge, near-infrared, and red bands