Explicit formulas for a continuous stochastic maturation model. Application to anticancer drug pharmacokinetics/pharmacodynamics

We present a continuous time model of maturation and survival, obtained as the limit of a compartmental evolution model when the number of compartments tends to infinity. We establish in particular an explicit formula for the law of the system output under inhomogeneous killing and when the input follows a time-inhomogeneous Poisson process. This approach allows the discussion of identifiability issues which are of difficult access for finite compartmental models. The article ends up with an example of application for anticancer drug pharmacokinetics/pharmacodynamics.Comment: Revised version, accepted for publication in Stochastic Models (Taylor & Francis

Dynamics for a non-linear and non-autonomous compartmental system

We study the long-time behavior of the amount of material within the compartments of a compartmental system for which the flow of material does not have to be instantaneous and may even take an infinite time to occur. Results on the estructure of minimal sets for monotone skew-product semiflows, previously obtained by the authors, are applied to this description

Analyzing Linear Communication Networks using the Ribosome Flow Model

The Ribosome Flow Model (RFM) describes the unidirectional movement of interacting particles along a one-dimensional chain of sites. As a site becomes fuller, the effective entry rate into this site decreases. The RFM has been used to model and analyze mRNA translation, a biological process in which ribosomes (the particles) move along the mRNA molecule (the chain), and decode the genetic information into proteins. Here we propose the RFM as an analytical framework for modeling and analyzing linear communication networks. In this context, the moving particles are data-packets, the chain of sites is a one dimensional set of ordered buffers, and the decreasing entry rate to a fuller buffer represents a kind of decentralized backpressure flow control. For an RFM with homogeneous link capacities, we provide closed-form expressions for important network metrics including the throughput and end-to-end delay. We use these results to analyze the hop length and the transmission probability (in a contention access mode) that minimize the end-to-end delay in a multihop linear network, and provide closed-form expressions for the optimal parameter values

Equivalence of finite dimensional input-output models of solute transport and diffusion in geosciences

We show that for a large class of finite dimensional input-output positive systems that represent networks of transport and diffusion of solute in geological media, there exist equivalent multi-rate mass transfer and multiple interacting continua representations, which are quite popular in geo-sciences. Moreover, we provide explicit methods to construct these equivalent representations. The proofs show that controllability property is playing a crucial role for obtaining equivalence. These results contribute to our fundamental understanding on the effect of fine-scale geological structures on the transfer and dispersion of solute, and, eventually, on their interaction with soil microbes and minerals

Transit times and mean ages for nonautonomous and autonomous compartmental systems

We develop a theory for transit times and mean ages for nonautonomous compartmental systems. Using the McKendrick-von F\"orster equation, we show that the mean ages of mass in a compartmental system satisfy a linear nonautonomous ordinary differential equation that is exponentially stable. We then define a nonautonomous version of transit time as the mean age of mass leaving the compartmental system at a particular time and show that our nonautonomous theory generalises the autonomous case. We apply these results to study a nine-dimensional nonautonomous compartmental system modeling the terrestrial carbon cycle, which is a modification of the Carnegie-Ames-Stanford approach (CASA) model, and we demonstrate that the nonautonomous versions of transit time and mean age differ significantly from the autonomous quantities when calculated for that model